Wall clock time and date at job start Mon Mar 30 2020 01:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34234 * 117.00018 * 2 1 4 4 O 1.20830 * 119.99314 * 0.02562 * 3 2 1 5 5 C 1.50691 * 120.00055 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.47084 * 179.97438 * 5 3 2 7 7 C 1.36933 * 120.00329 * 274.79722 * 6 5 3 8 8 H 1.08001 * 119.99777 * 182.35874 * 7 6 5 9 9 C 1.38811 * 120.00175 * 2.36735 * 7 6 5 10 10 N 1.31623 * 119.99733 * 27.01285 * 9 7 6 11 11 Si 1.86792 * 120.00199 * 207.01796 * 9 7 6 12 12 H 1.48503 * 109.47321 * 94.99008 * 11 9 7 13 13 H 1.48501 * 109.47276 * 214.99211 * 11 9 7 14 14 H 1.48504 * 109.47356 * 334.98962 * 11 9 7 15 15 C 1.46507 * 119.99753 * 94.80257 * 6 5 3 16 16 C 1.50706 * 109.46847 * 272.04554 * 15 6 5 17 17 N 1.36883 * 126.58935 * 263.94205 * 16 15 6 18 18 H 0.97001 * 126.39419 * 0.06039 * 17 16 15 19 19 C 1.35039 * 107.20577 * 180.02562 * 17 16 15 20 20 C 1.50706 * 125.65214 * 179.97438 * 19 17 16 21 21 N 1.30499 * 108.70189 * 0.22916 * 19 17 16 22 22 C 1.34132 * 109.25204 * 359.62781 * 21 19 17 23 23 C 1.50707 * 125.98810 * 180.11602 * 22 21 19 24 24 H 1.08998 * 109.47454 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47096 * 299.99356 * 1 2 3 26 26 H 1.08996 * 109.47548 * 59.99523 * 1 2 3 27 27 H 1.09005 * 109.47318 * 60.00593 * 5 3 2 28 28 H 1.08997 * 109.47485 * 300.00235 * 5 3 2 29 29 H 0.97002 * 120.00058 * 179.97438 * 10 9 7 30 30 H 1.08992 * 109.47174 * 152.04259 * 15 6 5 31 31 H 1.08996 * 109.47080 * 32.04199 * 15 6 5 32 32 H 1.08996 * 109.47014 * 89.99790 * 20 19 17 33 33 H 1.09004 * 109.46769 * 330.00034 * 20 19 17 34 34 H 1.08998 * 109.46867 * 210.00703 * 20 19 17 35 35 H 1.08993 * 109.47260 * 275.84624 * 23 22 21 36 36 H 1.09005 * 109.47027 * 35.84811 * 23 22 21 37 37 H 1.09000 * 109.47052 * 155.84455 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 7 3.9816 2.6798 -0.0011 7 6 4.0802 3.3643 -1.1830 8 1 4.4230 4.3884 -1.1869 9 6 3.7394 2.7419 -2.3760 10 7 2.8613 1.7614 -2.3793 11 14 4.5271 3.2957 -3.9766 12 1 5.7009 2.4360 -4.2741 13 1 3.5390 3.1833 -5.0795 14 1 4.9677 4.7081 -3.8489 15 6 4.2916 3.3524 1.2630 16 6 3.0306 3.9415 1.8410 17 7 2.5951 5.2319 1.7031 18 1 3.0408 5.9405 1.2131 19 6 1.4287 5.3338 2.3759 20 6 0.5899 6.5801 2.4960 21 7 1.1508 4.1758 2.9095 22 6 2.1160 3.2998 2.5928 23 6 2.1705 1.8528 3.0103 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 3.9557 0.7811 -0.8909 28 1 3.9564 0.7806 0.8891 29 1 2.6229 1.3267 -3.2131 30 1 5.0151 4.1476 1.0835 31 1 4.7107 2.6315 1.9649 32 1 -0.1257 6.6169 1.6747 33 1 1.2353 7.4577 2.4552 34 1 0.0538 6.5672 3.4449 35 1 2.6084 1.7781 4.0056 36 1 1.1615 1.4407 3.0254 37 1 2.7810 1.2930 2.3018 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929788005.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:09 Heat of formation + Delta-G solvation = -0.177731 kcal Electronic energy + Delta-G solvation = -21924.899012 eV Core-core repulsion = 18704.647282 eV Total energy + Delta-G solvation = -3220.251730 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.32355 -38.79860 -36.07280 -34.40421 -32.66523 -32.15025 -30.80576 -28.64870 -28.43089 -26.80165 -25.88103 -23.75218 -21.82621 -20.26448 -19.64749 -18.95594 -16.93002 -16.59541 -15.99939 -15.64892 -15.03557 -14.69039 -14.58438 -13.88621 -13.46970 -13.34506 -13.09161 -12.65352 -12.47561 -12.25136 -12.00098 -11.93839 -11.75385 -11.63213 -11.33164 -11.08355 -10.96145 -10.88980 -10.47051 -10.19797 -10.03845 -9.43887 -9.29222 -9.04473 -8.94787 -8.50692 -7.43444 -7.10170 -6.02536 -3.26174 2.80407 3.29788 3.37316 3.39483 3.79479 3.85424 4.03629 4.18231 4.44277 4.97188 5.18720 5.37033 5.46888 5.73415 5.78802 5.85925 5.87710 5.92475 5.98557 5.98863 6.11341 6.19727 6.24046 6.28330 6.34495 6.53547 6.72275 6.78059 7.07480 7.09756 7.56836 7.58665 7.91604 8.05314 8.15012 8.85235 8.91895 9.50754 9.67510 10.01587 11.08116 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016412 B = 0.009165 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.632196 B = 3054.330488 C = 3936.733666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.386 6.386 3 C 0.466 3.534 4 O -0.491 6.491 5 C 0.185 3.815 6 N -0.558 5.558 7 C -0.254 4.254 8 H 0.080 0.920 9 C 0.005 3.995 10 N -0.895 5.895 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.294 1.294 14 H -0.281 1.281 15 C 0.209 3.791 16 C -0.004 4.004 17 N -0.555 5.555 18 H 0.410 0.590 19 C 0.180 3.820 20 C -0.058 4.058 21 N -0.489 5.489 22 C 0.003 3.997 23 C -0.061 4.061 24 H 0.077 0.923 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.113 0.887 28 H 0.053 0.947 29 H 0.259 0.741 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.819 1.734 7.554 7.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.304 6.304 3 C 0.305 3.695 4 O -0.374 6.374 5 C 0.056 3.944 6 N -0.277 5.277 7 C -0.383 4.383 8 H 0.098 0.902 9 C -0.194 4.194 10 N -0.540 5.540 11 Si 0.738 3.262 12 H -0.212 1.212 13 H -0.220 1.220 14 H -0.206 1.206 15 C 0.081 3.919 16 C -0.122 4.122 17 N -0.158 5.158 18 H 0.246 0.754 19 C -0.083 4.083 20 C -0.117 4.117 21 N -0.211 5.211 22 C -0.126 4.126 23 C -0.119 4.119 24 H 0.096 0.904 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.130 0.870 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.151 1.755 7.887 8.081 hybrid contribution 0.444 0.952 -1.972 2.234 sum 0.293 2.707 5.915 6.511 Atomic orbital electron populations 1.22787 0.80103 1.00938 1.01108 1.86523 1.20709 1.37088 1.86094 1.25139 0.93155 0.80338 0.70872 1.90524 1.66254 1.36109 1.44513 1.20703 0.86130 0.86239 1.01283 1.44559 1.74278 1.07340 1.01477 1.19242 1.38460 0.97631 0.82919 0.90250 1.24732 0.97732 0.98807 0.98087 1.69854 1.29844 1.27685 1.26627 0.86167 0.79005 0.78063 0.82927 1.21209 1.22040 1.20614 1.19552 0.89614 0.95423 0.87333 1.22523 1.02883 0.84099 1.02742 1.42952 1.19893 1.11327 1.41638 0.75353 1.22809 0.89066 0.96872 0.99573 1.20009 0.97733 0.90471 1.03468 1.69890 1.26910 0.99404 1.24890 1.20005 0.93053 0.95925 1.03637 1.20019 1.01820 0.90170 0.99920 0.90429 0.93672 0.93245 0.86950 0.92959 0.93052 0.91993 0.91240 0.90970 0.91639 0.90010 0.92632 0.92367 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.88 10.56 101.05 1.07 1.95 16 2 O -0.39 -8.66 10.57 -39.27 -0.41 -9.08 16 3 C 0.47 11.36 3.84 36.00 0.14 11.50 16 4 O -0.49 -13.53 13.59 -18.75 -0.25 -13.79 16 5 C 0.19 4.22 4.96 -5.20 -0.03 4.20 16 6 N -0.56 -12.91 2.06 -175.98 -0.36 -13.27 16 7 C -0.25 -6.49 9.57 -15.06 -0.14 -6.63 16 8 H 0.08 1.98 7.95 -52.49 -0.42 1.56 16 9 C 0.00 0.12 4.95 -17.43 -0.09 0.04 16 10 N -0.90 -24.78 8.77 55.49 0.49 -24.29 16 11 Si 0.91 20.99 29.63 -169.99 -5.04 15.95 16 12 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 C 0.21 4.04 5.74 -5.19 -0.03 4.01 16 16 C 0.00 -0.07 6.10 -81.60 -0.50 -0.57 16 17 N -0.55 -10.34 6.15 -6.54 -0.04 -10.38 16 18 H 0.41 6.51 8.96 -40.82 -0.37 6.14 16 19 C 0.18 3.40 8.15 -155.42 -1.27 2.13 16 20 C -0.06 -0.79 10.51 36.01 0.38 -0.41 16 21 N -0.49 -10.58 11.25 -7.07 -0.08 -10.66 16 22 C 0.00 0.06 5.73 -82.85 -0.47 -0.41 16 23 C -0.06 -1.15 9.28 36.01 0.33 -0.82 16 24 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.04 0.86 8.13 -51.92 -0.42 0.44 16 26 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 27 H 0.11 2.77 6.27 -51.93 -0.33 2.45 16 28 H 0.05 1.01 6.66 -51.93 -0.35 0.67 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.06 1.10 8.01 -51.93 -0.42 0.68 16 31 H 0.07 1.18 7.74 -51.93 -0.40 0.77 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.21 4.13 -51.93 -0.21 1.00 16 LS Contribution 305.88 15.07 4.61 4.61 Total: -1.00 -33.57 305.88 -6.70 -40.27 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.00 Total: 5.67 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: -0.61 Total: 14.97 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: 0.00 Total: -58.61 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.67 Total: -22.87 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.04 Total: 15.95 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.57 -6.70 -40.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929788005.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.095 kcal (2) G-P(sol) polarization free energy of solvation -33.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds