Wall clock time and date at job start Mon Mar 30 2020 00:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99886 * 2 1 4 4 H 1.48506 * 109.47058 * 270.00471 * 3 2 1 5 5 H 1.48496 * 109.47235 * 29.99940 * 3 2 1 6 6 H 1.48498 * 109.46963 * 150.00286 * 3 2 1 7 7 C 1.38813 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00421 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99919 * 179.97438 * 7 2 1 10 10 C 1.46501 * 120.00057 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.91485 * 322.55573 * 10 9 7 12 12 C 1.55152 * 111.00174 * 86.46052 * 10 9 7 13 13 C 1.54330 * 102.94288 * 153.57805 * 12 10 9 14 14 N 1.47028 * 107.26752 * 337.80104 * 13 12 10 15 15 C 1.34774 * 125.64578 * 178.97656 * 14 13 12 16 16 O 1.21283 * 120.00157 * 355.22370 * 15 14 13 17 17 C 1.50698 * 119.99945 * 175.22128 * 15 14 13 18 18 H 1.09002 * 110.43206 * 28.01388 * 17 15 14 19 19 C 1.54623 * 110.48632 * 150.55288 * 17 15 14 20 20 C 1.54688 * 101.67143 * 143.39529 * 19 17 15 21 21 N 1.46763 * 105.53095 * 334.74156 * 20 19 17 22 22 C 1.34417 * 111.30524 * 16.92077 * 21 20 19 23 23 O 1.21282 * 124.94709 * 179.54976 * 22 21 20 24 24 C 1.47426 * 108.70212 * 358.94204 * 14 13 12 25 25 H 0.96993 * 119.99957 * 359.97438 * 1 2 3 26 26 H 0.97003 * 119.99928 * 0.02562 * 9 7 2 27 27 H 1.08998 * 110.72658 * 35.20957 * 12 10 9 28 28 H 1.09006 * 110.71547 * 271.93549 * 12 10 9 29 29 H 1.08995 * 109.88170 * 97.21685 * 13 12 10 30 30 H 1.08997 * 109.88219 * 218.23575 * 13 12 10 31 31 H 1.08999 * 110.97376 * 261.59471 * 19 17 15 32 32 H 1.09008 * 110.97208 * 25.35860 * 19 17 15 33 33 H 1.08999 * 110.29959 * 215.68414 * 20 19 17 34 34 H 1.09003 * 110.14242 * 93.71852 * 20 19 17 35 35 H 0.97009 * 124.34772 * 196.94065 * 21 20 19 36 36 H 1.09006 * 110.36036 * 142.96458 * 24 14 13 37 37 H 1.08999 * 110.36670 * 265.17779 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4704 -2.1375 -0.0014 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4709 -0.0011 11 1 3.6069 -3.2119 0.6183 12 6 4.3122 -2.9975 -1.4467 13 6 5.5901 -3.8548 -1.3286 14 7 6.3227 -3.3852 -0.1435 15 6 7.4842 -3.8930 0.3141 16 8 7.9677 -4.8722 -0.2135 17 6 8.1824 -3.2440 1.4813 18 1 7.4598 -2.7463 2.1281 19 6 8.9908 -4.2928 2.2796 20 6 10.2393 -3.4779 2.6920 21 7 10.3659 -2.4169 1.6859 22 6 9.2236 -2.2601 0.9950 23 8 9.0523 -1.4476 0.1110 24 6 5.5766 -2.2664 0.4608 25 1 -0.4850 0.8400 0.0004 26 1 3.8647 -0.3621 -0.0007 27 1 4.4651 -2.1709 -2.1406 28 1 3.4644 -3.6094 -1.7549 29 1 5.3223 -4.9043 -1.2071 30 1 6.2041 -3.7297 -2.2204 31 1 8.4356 -4.6295 3.1551 32 1 9.2675 -5.1362 1.6469 33 1 11.1251 -4.1131 2.6837 34 1 10.0945 -3.0442 3.6814 35 1 11.1708 -1.8958 1.5384 36 1 5.6412 -2.3109 1.5481 37 1 5.9614 -1.3136 0.0973 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019234532.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:53 Heat of formation + Delta-G solvation = -46.017323 kcal Electronic energy + Delta-G solvation = -20613.730553 eV Core-core repulsion = 17391.491069 eV Total energy + Delta-G solvation = -3222.239484 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.06677 -39.27985 -37.44725 -36.50852 -34.23372 -32.13697 -31.46770 -30.03798 -28.10433 -27.92672 -23.93645 -23.05500 -22.17127 -21.28710 -20.11458 -18.96187 -17.81010 -17.68046 -17.53890 -16.41144 -16.04122 -15.40775 -14.64743 -14.52671 -14.10445 -14.03310 -13.75435 -13.35516 -13.20129 -12.96473 -12.86524 -12.65430 -12.24090 -12.01684 -11.74335 -11.56905 -11.31379 -10.90577 -10.74436 -10.48622 -10.17007 -10.09080 -9.90519 -9.65978 -9.44849 -9.00504 -8.52005 -7.38199 -5.84201 -3.22127 2.16750 2.51392 2.94524 3.19809 3.34258 3.37983 3.43007 3.99601 4.11676 4.38228 4.53212 4.63580 4.72538 4.94912 4.99483 5.10304 5.19591 5.28288 5.46567 5.51018 5.52470 5.61142 5.73115 5.78991 5.94334 6.07027 6.28487 6.39326 6.42544 6.56432 6.64331 6.78572 7.55954 7.89664 7.93072 8.10651 8.34122 9.10693 9.83021 10.01008 11.33480 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.026184 B = 0.004811 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.089685 B = 5818.879662 C = 6379.110984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.010 3.990 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.093 0.907 9 N -0.739 5.739 10 C 0.178 3.822 11 H 0.073 0.927 12 C -0.154 4.154 13 C 0.109 3.891 14 N -0.601 5.601 15 C 0.550 3.450 16 O -0.543 6.543 17 C -0.151 4.151 18 H 0.130 0.870 19 C -0.121 4.121 20 C 0.102 3.898 21 N -0.730 5.730 22 C 0.536 3.464 23 O -0.515 6.515 24 C 0.086 3.914 25 H 0.261 0.739 26 H 0.364 0.636 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.413 0.587 36 H 0.075 0.925 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.964 -7.791 6.756 22.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.187 4.187 3 Si 0.713 3.287 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.382 5.382 10 C 0.067 3.933 11 H 0.091 0.909 12 C -0.195 4.195 13 C -0.013 4.013 14 N -0.333 5.333 15 C 0.336 3.664 16 O -0.421 6.421 17 C -0.175 4.175 18 H 0.148 0.852 19 C -0.159 4.159 20 C -0.023 4.023 21 N -0.387 5.387 22 C 0.320 3.680 23 O -0.390 6.390 24 C -0.037 4.037 25 H 0.071 0.929 26 H 0.197 0.803 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.253 0.747 36 H 0.093 0.907 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 19.801 -8.017 6.054 22.204 hybrid contribution 0.862 1.567 0.005 1.788 sum 20.662 -6.450 6.059 22.478 Atomic orbital electron populations 1.69696 1.05127 1.26016 1.56858 1.24663 0.95209 0.97236 1.01559 0.86585 0.79232 0.84937 0.77980 1.20915 1.21628 1.20212 1.19023 0.80126 0.94871 1.43886 0.88968 1.42616 1.04170 1.01449 1.89915 1.21247 0.88591 0.89881 0.93591 0.90872 1.23392 0.95143 0.99634 1.01291 1.22021 0.93290 0.98797 0.87210 1.48311 1.21690 1.34397 1.28939 1.19239 0.79801 0.83438 0.83901 1.90678 1.65332 1.26474 1.59629 1.22130 0.98701 0.98433 0.98245 0.85228 1.22716 0.94677 0.97692 1.00815 1.22154 0.99379 0.89029 0.91708 1.46090 1.14968 1.39490 1.38102 1.20161 0.83552 0.83166 0.81080 1.90819 1.80946 1.37448 1.29751 1.22736 0.93378 0.89675 0.97960 0.92902 0.80276 0.90547 0.90104 0.91499 0.91885 0.88440 0.87968 0.89746 0.90605 0.74743 0.90664 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.45 13.97 55.49 0.78 -27.68 16 2 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 3 Si 0.88 21.55 27.74 -169.99 -4.71 16.83 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 7 C -0.25 -6.72 10.47 -15.06 -0.16 -6.88 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 9 N -0.74 -16.58 5.08 -51.35 -0.26 -16.84 16 10 C 0.18 3.22 3.69 -65.78 -0.24 2.98 16 11 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16 12 C -0.15 -2.55 6.65 -24.90 -0.17 -2.71 16 13 C 0.11 1.67 6.87 -3.06 -0.02 1.65 16 14 N -0.60 -9.33 3.33 -170.51 -0.57 -9.90 16 15 C 0.55 8.37 6.87 -10.99 -0.08 8.30 16 16 O -0.54 -9.57 16.10 5.55 0.09 -9.48 16 17 C -0.15 -1.72 2.95 -91.78 -0.27 -1.99 16 18 H 0.13 1.27 6.52 -51.93 -0.34 0.93 16 19 C -0.12 -0.94 6.66 -24.99 -0.17 -1.11 16 20 C 0.10 0.58 7.79 -3.01 -0.02 0.55 16 21 N -0.73 -6.34 6.24 -59.09 -0.37 -6.71 16 22 C 0.54 6.99 7.85 -10.86 -0.09 6.91 16 23 O -0.52 -8.97 17.86 5.56 0.10 -8.87 16 24 C 0.09 1.34 6.21 -2.53 -0.02 1.32 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.36 8.09 5.57 -40.82 -0.23 7.87 16 27 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.96 6.97 -51.92 -0.36 0.60 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.41 2.86 8.96 -40.82 -0.37 2.49 16 36 H 0.08 1.00 6.88 -51.93 -0.36 0.64 16 37 H 0.07 1.23 8.00 -51.93 -0.42 0.82 16 LS Contribution 306.95 15.07 4.63 4.63 Total: -1.00 -34.86 306.95 -6.68 -41.54 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.04 Total: 7.29 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -1.32 Total: 9.19 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -0.42 Total: -61.13 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.19 Total: -18.36 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.83 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.86 -6.68 -41.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019234532.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.475 kcal (2) G-P(sol) polarization free energy of solvation -34.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds