Wall clock time and date at job start Mon Mar 30 2020 01:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.27574 * 126.42130 * 2 1 4 4 N 1.39141 * 113.16450 * 180.02562 * 3 2 1 5 5 C 1.34952 * 111.12706 * 359.97438 * 4 3 2 6 6 O 1.21301 * 127.50122 * 179.97438 * 5 4 3 7 7 C 1.51445 * 126.41594 * 180.02562 * 2 1 3 8 8 H 1.08996 * 110.73838 * 298.53863 * 7 2 1 9 9 C 1.53003 * 110.60476 * 61.43937 * 7 2 1 10 10 C 1.53008 * 109.46693 * 180.58281 * 9 7 2 11 11 N 1.46505 * 109.46733 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99513 * 180.02562 * 11 10 9 13 13 O 1.21277 * 120.00513 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99464 * 179.97438 * 12 11 10 15 15 H 1.09004 * 109.47210 * 60.00192 * 14 12 11 16 16 C 1.53000 * 109.47313 * 300.00010 * 14 12 11 17 17 C 1.50702 * 109.46869 * 179.97438 * 14 12 11 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 14 12 19 19 C 1.37884 * 119.99942 * 179.72213 * 17 14 12 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 14 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 14 22 22 H 1.48501 * 109.47188 * 90.00793 * 21 19 17 23 23 H 1.48501 * 109.47085 * 210.00372 * 21 19 17 24 24 H 1.48498 * 109.47634 * 330.00608 * 21 19 17 25 25 H 1.08995 * 109.47587 * 269.95161 * 1 2 3 26 26 H 1.09006 * 109.46977 * 29.94818 * 1 2 3 27 27 H 1.09000 * 109.47050 * 149.94295 * 1 2 3 28 28 H 0.97009 * 124.43625 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.46943 * 60.58762 * 9 7 2 30 30 H 1.08994 * 109.47547 * 300.58056 * 9 7 2 31 31 H 1.08998 * 109.47034 * 60.00536 * 10 9 7 32 32 H 1.09002 * 109.46785 * 299.99866 * 10 9 7 33 33 H 0.96995 * 119.99906 * 359.97438 * 11 10 9 34 34 H 1.08994 * 109.47175 * 60.00247 * 16 14 12 35 35 H 1.09001 * 109.47192 * 180.02562 * 16 14 12 36 36 H 1.09004 * 109.47084 * 299.99675 * 16 14 12 37 37 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2644 1.0266 0.0000 4 7 3.6187 0.7075 -0.0006 5 6 3.8035 -0.6293 -0.0004 6 8 4.8579 -1.2291 -0.0012 7 6 2.4060 -1.2187 -0.0005 8 1 2.2432 -1.8188 0.8947 9 6 2.1746 -2.0579 -1.2588 10 6 3.0841 -3.2880 -1.2257 11 7 2.8630 -4.0912 -2.4308 12 6 3.5590 -5.2300 -2.6186 13 8 4.3686 -5.5895 -1.7903 14 6 3.3312 -6.0565 -3.8579 15 1 3.5605 -5.4591 -4.7403 16 6 1.8690 -6.5040 -3.9109 17 6 4.2269 -7.2680 -3.8254 18 1 4.8942 -7.4240 -2.9906 19 6 4.1902 -8.1805 -4.8584 20 7 3.3775 -7.9906 -5.8748 21 14 5.2950 -9.6860 -4.8144 22 1 4.5862 -10.8004 -4.1354 23 1 5.6373 -10.0896 -6.2019 24 1 6.5398 -9.3652 -4.0709 25 1 -0.3634 -0.0009 1.0276 26 1 -0.3633 0.8905 -0.5131 27 1 -0.3633 -0.8895 -0.5147 28 1 4.3361 1.3605 -0.0010 29 1 2.4037 -1.4604 -2.1412 30 1 1.1331 -2.3771 -1.2963 31 1 2.8550 -3.8855 -0.3433 32 1 4.1256 -2.9688 -1.1882 33 1 2.2152 -3.8039 -3.0930 34 1 1.2215 -5.6275 -3.9347 35 1 1.7044 -7.1022 -4.8071 36 1 1.6397 -7.1015 -3.0285 37 1 3.3519 -8.6324 -6.6018 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136654189.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:48 Heat of formation + Delta-G solvation = -33.459572 kcal Electronic energy + Delta-G solvation = -19968.800026 eV Core-core repulsion = 16747.105087 eV Total energy + Delta-G solvation = -3221.694939 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.68306 -38.72389 -37.78482 -35.34851 -33.67847 -33.26724 -31.75813 -30.28920 -28.54437 -27.10242 -25.09294 -23.40076 -21.93202 -21.02870 -20.30858 -19.26107 -18.07455 -16.65568 -16.30232 -15.88768 -15.62478 -15.40876 -14.77758 -14.34171 -14.33182 -13.98365 -13.79588 -13.34006 -12.93479 -12.85236 -12.60403 -12.43247 -12.24180 -11.81964 -11.72715 -11.40068 -10.99554 -10.94902 -10.67260 -10.62029 -10.21957 -9.93744 -9.90157 -9.26263 -8.93196 -8.56088 -8.36911 -8.27535 -5.99451 -4.01987 1.20256 2.30069 2.37873 3.36903 3.42273 3.46781 3.50002 3.62160 3.81819 3.90803 4.42987 4.50967 4.69598 4.84882 5.03983 5.09724 5.11349 5.15316 5.33949 5.40089 5.53067 5.73109 5.98575 6.09843 6.33398 6.42060 6.64670 6.85943 6.96362 7.12758 7.21562 7.51590 7.66232 7.79468 8.03545 8.19509 8.50690 9.07514 9.31794 9.63546 11.08240 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.037705 B = 0.003637 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.427469 B = 7697.075598 C = 8196.450954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.103 3.897 3 N -0.238 5.238 4 N -0.577 5.577 5 C 0.500 3.500 6 O -0.480 6.480 7 C -0.139 4.139 8 H 0.140 0.860 9 C -0.101 4.101 10 C 0.112 3.888 11 N -0.748 5.748 12 C 0.518 3.482 13 O -0.543 6.543 14 C 0.028 3.972 15 H 0.052 0.948 16 C -0.131 4.131 17 C -0.499 4.499 18 H 0.074 0.926 19 C 0.057 3.943 20 N -0.898 5.898 21 Si 0.900 3.100 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.434 0.566 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.394 0.606 34 H 0.012 0.988 35 H 0.093 0.907 36 H 0.031 0.969 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.028 17.867 9.668 22.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 N -0.046 5.046 4 N -0.325 5.325 5 C 0.284 3.716 6 O -0.350 6.350 7 C -0.163 4.163 8 H 0.157 0.843 9 C -0.140 4.140 10 C -0.013 4.013 11 N -0.402 5.402 12 C 0.307 3.693 13 O -0.419 6.419 14 C 0.007 3.993 15 H 0.070 0.930 16 C -0.189 4.189 17 C -0.538 4.538 18 H 0.092 0.908 19 C -0.143 4.143 20 N -0.538 5.538 21 Si 0.728 3.272 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.197 1.197 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.109 0.891 28 H 0.279 0.721 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.228 0.772 34 H 0.031 0.969 35 H 0.111 0.889 36 H 0.050 0.950 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.729 18.121 10.116 22.514 hybrid contribution 0.715 -0.990 -0.278 1.252 sum -8.013 17.131 9.838 21.319 Atomic orbital electron populations 1.20411 0.84450 1.04807 1.04254 1.25368 0.97592 0.90172 0.95930 1.74617 0.89117 1.26528 1.14367 1.47553 1.04507 1.07801 1.72642 1.21317 0.91339 0.83229 0.75667 1.90883 1.30840 1.65830 1.47458 1.21778 0.92967 0.97717 1.03875 0.84296 1.21492 1.01956 0.95962 0.94610 1.21286 1.00097 0.90452 0.89417 1.46238 1.45105 1.25710 1.23195 1.21964 0.78549 0.79316 0.89431 1.90543 1.34870 1.70178 1.46291 1.18878 0.95725 0.94883 0.89787 0.93047 1.21734 0.94862 0.98962 1.03368 1.21172 1.21200 1.05103 1.06303 0.90786 1.24949 0.95803 0.98298 0.95236 1.69873 1.37824 1.36625 1.09447 0.86453 0.81126 0.82682 0.76972 1.20687 1.21325 1.19731 0.89138 0.89558 0.89064 0.72077 0.90723 0.89057 0.91916 0.90572 0.77213 0.96943 0.88869 0.95028 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.28 10.49 36.00 0.38 0.10 16 2 C 0.10 0.75 6.93 -78.72 -0.55 0.20 16 3 N -0.24 -2.18 12.21 35.53 0.43 -1.74 16 4 N -0.58 -5.79 7.13 31.51 0.22 -5.57 16 5 C 0.50 6.16 8.05 -10.43 -0.08 6.08 16 6 O -0.48 -7.95 16.22 5.54 0.09 -7.86 16 7 C -0.14 -1.27 3.06 -92.08 -0.28 -1.55 16 8 H 0.14 1.08 8.14 -51.93 -0.42 0.66 16 9 C -0.10 -0.99 4.85 -26.73 -0.13 -1.12 16 10 C 0.11 1.70 5.48 -4.03 -0.02 1.68 16 11 N -0.75 -13.13 5.45 -60.29 -0.33 -13.46 16 12 C 0.52 12.21 7.15 -10.99 -0.08 12.13 16 13 O -0.54 -14.90 15.46 5.56 0.09 -14.82 16 14 C 0.03 0.72 2.64 -92.92 -0.25 0.47 16 15 H 0.05 1.35 8.14 -51.93 -0.42 0.92 16 16 C -0.13 -3.01 8.86 37.16 0.33 -2.68 16 17 C -0.50 -14.50 8.38 -34.44 -0.29 -14.79 16 18 H 0.07 2.28 6.75 -52.49 -0.35 1.93 16 19 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 20 N -0.90 -25.47 11.31 55.43 0.63 -24.84 16 21 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 25 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 0.21 7.56 -51.93 -0.39 -0.18 16 28 H 0.43 3.55 8.96 -183.31 -1.64 1.90 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.09 0.65 7.58 -51.93 -0.39 0.26 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.39 6.21 -51.93 -0.32 1.07 16 33 H 0.39 5.75 7.89 -40.82 -0.32 5.43 16 34 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 35 H 0.09 2.35 6.06 -51.93 -0.31 2.04 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 313.73 15.07 4.73 4.73 Total: -1.00 -35.91 313.73 -6.45 -42.36 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.23 Total: 1.98 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -1.06 Total: 2.05 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.96 Total: -45.62 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: 0.18 Total: -22.68 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.91 -6.45 -42.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136654189.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.901 kcal (2) G-P(sol) polarization free energy of solvation -35.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds