Wall clock time and date at job start Mon Mar 30 2020 01:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.27566 * 126.41506 * 2 1 4 4 N 1.39157 * 113.16186 * 179.88838 * 3 2 1 5 5 C 1.34951 * 111.12033 * 0.40102 * 4 3 2 6 6 O 1.21297 * 127.49770 * 179.81170 * 5 4 3 7 7 C 1.51443 * 126.41522 * 180.31370 * 2 1 3 8 8 H 1.08998 * 110.60412 * 61.44988 * 7 2 1 9 9 C 1.52992 * 110.61038 * 298.47808 * 7 2 1 10 10 C 1.52998 * 109.47254 * 174.99684 * 9 7 2 11 11 N 1.46506 * 109.47077 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99691 * 180.02562 * 11 10 9 13 13 O 1.21272 * 120.00191 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99554 * 180.02562 * 12 11 10 15 15 C 1.53002 * 109.46876 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.46876 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00474 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99731 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00196 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00201 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46901 * 89.99733 * 20 18 16 22 22 H 1.48504 * 109.47086 * 209.99758 * 20 18 16 23 23 H 1.48499 * 109.46878 * 329.99828 * 20 18 16 24 24 H 1.09002 * 109.47152 * 269.68468 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.68569 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.68550 * 1 2 3 27 27 H 0.97001 * 124.43586 * 180.19114 * 4 3 2 28 28 H 1.08995 * 109.47384 * 295.00584 * 9 7 2 29 29 H 1.09002 * 109.47196 * 54.99864 * 9 7 2 30 30 H 1.08988 * 109.47655 * 300.00320 * 10 9 7 31 31 H 1.08998 * 109.46812 * 60.00493 * 10 9 7 32 32 H 0.96998 * 120.00048 * 0.02562 * 11 10 9 33 33 H 1.09004 * 109.47234 * 299.99752 * 14 12 11 34 34 H 1.08998 * 109.47079 * 60.00104 * 14 12 11 35 35 H 1.09004 * 109.46884 * 299.99840 * 15 14 12 36 36 H 1.08998 * 109.47285 * 60.00104 * 15 14 12 37 37 H 0.96999 * 120.00708 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6188 0.7075 0.0025 5 6 3.8035 -0.6292 -0.0045 6 8 4.8579 -1.2289 -0.0077 7 6 2.4060 -1.2187 -0.0067 8 1 2.2414 -1.8119 -0.9061 9 6 2.1763 -2.0643 1.2474 10 6 3.0032 -3.3483 1.1554 11 7 2.7836 -4.1577 2.3567 12 6 3.4140 -5.3407 2.4966 13 8 4.1627 -5.7354 1.6279 14 6 3.1877 -6.1736 3.7319 15 6 4.0157 -7.4569 3.6405 16 6 3.7889 -8.2901 4.8756 17 1 3.1207 -7.9396 5.6483 18 6 4.4337 -9.5003 5.0187 19 7 4.2362 -10.2272 6.0968 20 14 5.5879 -10.1076 3.6814 21 1 6.9642 -9.6235 3.9580 22 1 5.5807 -11.5925 3.6581 23 1 5.1362 -9.5897 2.3650 24 1 -0.3633 -0.0057 1.0277 25 1 -0.3633 -0.8872 -0.5187 26 1 -0.3633 0.8928 -0.5090 27 1 4.3361 1.3605 0.0055 28 1 2.4804 -1.4985 2.1280 29 1 1.1191 -2.3179 1.3260 30 1 2.6990 -3.9141 0.2750 31 1 4.0604 -3.0946 1.0770 32 1 2.1846 -3.8422 3.0513 33 1 3.4916 -5.6075 4.6125 34 1 2.1306 -6.4276 3.8102 35 1 3.7123 -8.0232 2.7599 36 1 5.0727 -7.2025 3.5625 37 1 4.6895 -11.0789 6.1974 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144233380.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:33 Heat of formation + Delta-G solvation = -36.998065 kcal Electronic energy + Delta-G solvation = -19473.284634 eV Core-core repulsion = 16251.436254 eV Total energy + Delta-G solvation = -3221.848380 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.83422 -39.21536 -37.93683 -35.70779 -33.52411 -33.44248 -32.04044 -31.15357 -28.69019 -27.77095 -25.77377 -23.14885 -21.28821 -21.13922 -20.46449 -19.59505 -18.22781 -17.22211 -16.73249 -16.04576 -15.92226 -15.58418 -15.19334 -14.91638 -14.23240 -14.06311 -13.97138 -13.82861 -13.12731 -13.06268 -12.91504 -12.57566 -12.50434 -12.37631 -12.07715 -11.81977 -11.38541 -11.16976 -10.92540 -10.13773 -10.08912 -10.01495 -9.75494 -9.41233 -9.21236 -9.13661 -8.84277 -8.48263 -6.00914 -3.99512 1.05663 2.15686 2.23446 3.17313 3.30095 3.35272 3.40713 3.47017 3.56836 3.58624 4.25816 4.44656 4.53581 4.62904 4.80978 4.93315 4.97778 5.00694 5.22821 5.33214 5.34784 5.45861 5.58858 5.73522 5.95457 6.10967 6.12929 6.21989 6.62182 6.72692 7.07441 7.40203 7.46792 7.50979 7.77810 7.82857 8.52516 8.69831 9.02180 9.62412 11.11900 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.040299 B = 0.003118 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.635699 B = 8979.390650 C = 9386.268063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.103 3.897 3 N -0.237 5.237 4 N -0.576 5.576 5 C 0.500 3.500 6 O -0.482 6.482 7 C -0.139 4.139 8 H 0.141 0.859 9 C -0.101 4.101 10 C 0.111 3.889 11 N -0.743 5.743 12 C 0.509 3.491 13 O -0.538 6.538 14 C -0.121 4.121 15 C 0.001 3.999 16 C -0.524 4.524 17 H 0.072 0.928 18 C 0.069 3.931 19 N -0.904 5.904 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.261 1.261 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.435 0.565 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.398 0.602 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.024 0.976 36 H 0.019 0.981 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.735 24.397 -12.540 29.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 N -0.045 5.045 4 N -0.324 5.324 5 C 0.284 3.716 6 O -0.352 6.352 7 C -0.164 4.164 8 H 0.158 0.842 9 C -0.140 4.140 10 C -0.013 4.013 11 N -0.397 5.397 12 C 0.297 3.703 13 O -0.413 6.413 14 C -0.161 4.161 15 C -0.037 4.037 16 C -0.562 4.562 17 H 0.091 0.909 18 C -0.133 4.133 19 N -0.543 5.543 20 Si 0.704 3.296 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.185 1.185 24 H 0.111 0.889 25 H 0.109 0.891 26 H 0.105 0.895 27 H 0.280 0.720 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.231 0.769 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.042 0.958 36 H 0.037 0.963 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.397 24.549 -13.107 29.372 hybrid contribution 0.855 -0.576 -0.306 1.075 sum -8.542 23.973 -13.412 28.767 Atomic orbital electron populations 1.20416 0.84364 1.04721 1.04449 1.25385 0.97618 0.90051 0.96023 1.74638 0.89084 1.26511 1.14230 1.47563 1.04550 1.07789 1.72509 1.21311 0.91286 0.83287 0.75675 1.90882 1.30827 1.65898 1.47605 1.21791 0.93079 0.97729 1.03772 0.84203 1.21466 1.02285 0.95333 0.94907 1.21349 1.01057 0.89951 0.88925 1.46105 1.49766 1.21623 1.22211 1.21542 0.78839 0.80475 0.89434 1.90665 1.36374 1.70814 1.43465 1.21664 1.03105 0.97876 0.93493 1.19375 0.95181 0.91357 0.97814 1.21118 1.27952 1.03448 1.03708 0.90939 1.24972 0.96363 0.96479 0.95444 1.69910 1.43714 1.13362 1.27352 0.86796 0.81648 0.77533 0.83594 1.20237 1.21456 1.18494 0.88943 0.89138 0.89542 0.71982 0.90623 0.88918 0.91446 0.90300 0.76853 0.89666 0.89572 0.95802 0.96266 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.17 10.47 36.01 0.38 0.21 16 2 C 0.10 0.58 6.93 -78.72 -0.55 0.04 16 3 N -0.24 -1.83 12.21 35.53 0.43 -1.40 16 4 N -0.58 -4.94 7.13 31.51 0.22 -4.71 16 5 C 0.50 5.29 8.08 -10.43 -0.08 5.21 16 6 O -0.48 -7.11 16.45 5.54 0.09 -7.02 16 7 C -0.14 -1.00 3.02 -92.08 -0.28 -1.28 16 8 H 0.14 0.83 8.14 -51.93 -0.42 0.41 16 9 C -0.10 -0.73 4.84 -26.74 -0.13 -0.86 16 10 C 0.11 1.33 5.54 -4.04 -0.02 1.31 16 11 N -0.74 -9.81 5.56 -60.30 -0.34 -10.15 16 12 C 0.51 9.49 7.83 -10.98 -0.09 9.41 16 13 O -0.54 -12.46 15.98 5.56 0.09 -12.37 16 14 C -0.12 -2.38 5.64 -27.88 -0.16 -2.53 16 15 C 0.00 0.02 3.33 -27.88 -0.09 -0.08 16 16 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 17 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -28.29 13.96 55.43 0.77 -27.52 16 20 Si 0.88 22.96 27.47 -169.99 -4.67 18.29 16 21 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.26 -6.81 6.54 56.52 0.37 -6.44 16 24 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 25 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 26 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.43 2.97 8.96 -183.30 -1.64 1.33 16 28 H 0.08 0.57 8.12 -51.93 -0.42 0.14 16 29 H 0.09 0.42 8.12 -51.93 -0.42 -0.01 16 30 H 0.07 0.83 8.14 -51.94 -0.42 0.40 16 31 H 0.08 1.20 6.46 -51.93 -0.34 0.86 16 32 H 0.40 3.85 8.47 -40.82 -0.35 3.50 16 33 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.02 0.63 7.15 -51.93 -0.37 0.26 16 36 H 0.02 0.51 7.53 -51.93 -0.39 0.11 16 37 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 318.43 15.07 4.80 4.80 Total: -1.00 -38.45 318.43 -6.52 -44.96 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -6.48 Total: -2.76 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -1.45 Total: -2.13 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 1.10 Total: -43.77 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: 0.18 Total: -19.39 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.67 Total: 18.29 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -38.45 -6.52 -44.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144233380.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.966 kcal (2) G-P(sol) polarization free energy of solvation -38.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds