Wall clock time and date at job start Mon Mar 30 2020 01:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.27566 * 126.41506 * 2 1 4 4 N 1.39157 * 113.16186 * 179.88838 * 3 2 1 5 5 C 1.34951 * 111.12033 * 0.40102 * 4 3 2 6 6 O 1.21297 * 127.49770 * 179.81170 * 5 4 3 7 7 C 1.51443 * 126.41522 * 180.31370 * 2 1 3 8 8 H 1.08998 * 110.60412 * 61.44988 * 7 2 1 9 9 C 1.52992 * 110.61038 * 298.47808 * 7 2 1 10 10 C 1.52998 * 109.47254 * 174.99684 * 9 7 2 11 11 N 1.46506 * 109.47077 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99691 * 180.02562 * 11 10 9 13 13 O 1.21272 * 120.00191 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99554 * 180.02562 * 12 11 10 15 15 C 1.53002 * 109.46876 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.46876 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00474 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99731 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00196 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00201 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46901 * 89.99733 * 20 18 16 22 22 H 1.48504 * 109.47086 * 209.99758 * 20 18 16 23 23 H 1.48499 * 109.46878 * 329.99828 * 20 18 16 24 24 H 1.09002 * 109.47152 * 269.68468 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.68569 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.68550 * 1 2 3 27 27 H 0.97001 * 124.43586 * 180.19114 * 4 3 2 28 28 H 1.08995 * 109.47384 * 295.00584 * 9 7 2 29 29 H 1.09002 * 109.47196 * 54.99864 * 9 7 2 30 30 H 1.08988 * 109.47655 * 300.00320 * 10 9 7 31 31 H 1.08998 * 109.46812 * 60.00493 * 10 9 7 32 32 H 0.96998 * 120.00048 * 0.02562 * 11 10 9 33 33 H 1.09004 * 109.47234 * 299.99752 * 14 12 11 34 34 H 1.08998 * 109.47079 * 60.00104 * 14 12 11 35 35 H 1.09004 * 109.46884 * 299.99840 * 15 14 12 36 36 H 1.08998 * 109.47285 * 60.00104 * 15 14 12 37 37 H 0.96999 * 120.00708 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6188 0.7075 0.0025 5 6 3.8035 -0.6292 -0.0045 6 8 4.8579 -1.2289 -0.0077 7 6 2.4060 -1.2187 -0.0067 8 1 2.2414 -1.8119 -0.9061 9 6 2.1763 -2.0643 1.2474 10 6 3.0032 -3.3483 1.1554 11 7 2.7836 -4.1577 2.3567 12 6 3.4140 -5.3407 2.4966 13 8 4.1627 -5.7354 1.6279 14 6 3.1877 -6.1736 3.7319 15 6 4.0157 -7.4569 3.6405 16 6 3.7889 -8.2901 4.8756 17 1 3.1207 -7.9396 5.6483 18 6 4.4337 -9.5003 5.0187 19 7 4.2362 -10.2272 6.0968 20 14 5.5879 -10.1076 3.6814 21 1 6.9642 -9.6235 3.9580 22 1 5.5807 -11.5925 3.6581 23 1 5.1362 -9.5897 2.3650 24 1 -0.3633 -0.0057 1.0277 25 1 -0.3633 -0.8872 -0.5187 26 1 -0.3633 0.8928 -0.5090 27 1 4.3361 1.3605 0.0055 28 1 2.4804 -1.4985 2.1280 29 1 1.1191 -2.3179 1.3260 30 1 2.6990 -3.9141 0.2750 31 1 4.0604 -3.0946 1.0770 32 1 2.1846 -3.8422 3.0513 33 1 3.4916 -5.6075 4.6125 34 1 2.1306 -6.4276 3.8102 35 1 3.7123 -8.0232 2.7599 36 1 5.0727 -7.2025 3.5625 37 1 4.6895 -11.0789 6.1974 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144233380.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:33 Heat of formation + Delta-G solvation = -68.434712 kcal Electronic energy + Delta-G solvation = -19474.647829 eV Core-core repulsion = 16251.436254 eV Total energy + Delta-G solvation = -3223.211575 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.48163 -40.65686 -38.73961 -36.76236 -35.52581 -34.30003 -33.35970 -32.59098 -29.20919 -28.82242 -27.33140 -24.19689 -22.90705 -21.97003 -21.06082 -21.01294 -19.20137 -18.92385 -17.68935 -17.36695 -17.03742 -16.67435 -16.25000 -16.19730 -15.89162 -15.04807 -14.83771 -14.64129 -14.53339 -14.28338 -14.11969 -13.48281 -13.38466 -13.21259 -12.97263 -12.91657 -12.78757 -12.67976 -12.10252 -11.96742 -11.80802 -11.76242 -11.39561 -10.84382 -10.78318 -10.74459 -10.07924 -10.01632 -8.31782 -6.34175 0.50115 1.32547 1.34450 1.48260 1.49846 1.64017 1.70359 2.24201 2.34736 2.73932 2.98772 3.04003 3.67180 3.82354 3.93809 4.10173 4.15395 4.41028 4.42515 4.51594 4.62380 4.74476 4.90276 4.94009 4.97553 5.01637 5.10015 5.33613 5.37667 5.45324 5.48733 5.61530 5.62588 6.23682 6.48668 6.61581 6.72300 6.83243 7.31277 7.34385 8.83803 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.040299 B = 0.003118 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.635699 B = 8979.390650 C = 9386.268063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.130 3.870 3 N -0.265 5.265 4 N -0.575 5.575 5 C 0.486 3.514 6 O -0.539 6.539 7 C -0.138 4.138 8 H 0.157 0.843 9 C -0.087 4.087 10 C 0.110 3.890 11 N -0.716 5.716 12 C 0.510 3.490 13 O -0.590 6.590 14 C -0.115 4.115 15 C 0.003 3.997 16 C -0.527 4.527 17 H 0.053 0.947 18 C 0.014 3.986 19 N -0.943 5.943 20 Si 0.936 3.064 21 H -0.272 1.272 22 H -0.276 1.276 23 H -0.263 1.263 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.093 0.907 27 H 0.438 0.562 28 H 0.077 0.923 29 H 0.136 0.864 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.419 0.581 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.010 0.990 36 H 0.004 0.996 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.108 25.741 -13.223 31.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 N -0.073 5.073 4 N -0.321 5.321 5 C 0.272 3.728 6 O -0.414 6.414 7 C -0.162 4.162 8 H 0.174 0.826 9 C -0.126 4.126 10 C -0.013 4.013 11 N -0.370 5.370 12 C 0.299 3.701 13 O -0.471 6.471 14 C -0.155 4.155 15 C -0.035 4.035 16 C -0.565 4.565 17 H 0.072 0.928 18 C -0.183 4.183 19 N -0.583 5.583 20 Si 0.761 3.239 21 H -0.197 1.197 22 H -0.202 1.202 23 H -0.187 1.187 24 H 0.130 0.870 25 H 0.132 0.868 26 H 0.111 0.889 27 H 0.283 0.717 28 H 0.095 0.905 29 H 0.154 0.846 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.257 0.743 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.029 0.971 36 H 0.022 0.978 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.842 25.977 -13.767 31.695 hybrid contribution 1.485 -0.910 -0.061 1.743 sum -10.357 25.067 -13.828 30.444 Atomic orbital electron populations 1.20705 0.81153 1.06225 1.06057 1.26018 0.98948 0.88337 0.92975 1.74745 0.88372 1.27192 1.16947 1.47667 1.05510 1.07378 1.71553 1.21926 0.92020 0.83969 0.74871 1.90848 1.32972 1.67060 1.50474 1.21857 0.91263 0.98476 1.04585 0.82562 1.21418 1.03714 0.92604 0.94830 1.21406 1.00090 0.91785 0.88070 1.45793 1.48325 1.19712 1.23126 1.21288 0.78704 0.81752 0.88395 1.90652 1.38945 1.72427 1.45027 1.21496 1.03380 0.95759 0.94844 1.19239 0.95343 0.93562 0.95378 1.21434 1.26959 1.03772 1.04358 0.92840 1.25774 0.98095 0.97002 0.97461 1.70012 1.45136 1.14077 1.29122 0.85867 0.79755 0.77582 0.80730 1.19692 1.20154 1.18688 0.87026 0.86846 0.88872 0.71688 0.90473 0.84596 0.91539 0.93880 0.74307 0.87984 0.87256 0.97132 0.97796 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.06 10.47 71.24 0.75 0.81 16 2 C 0.13 1.04 6.93 46.83 0.32 1.37 16 3 N -0.26 -3.59 12.21 -40.84 -0.50 -4.09 16 4 N -0.57 -9.65 7.13 -172.51 -1.23 -10.88 16 5 C 0.49 10.25 8.08 87.94 0.71 10.96 16 6 O -0.54 -16.75 16.45 -3.08 -0.05 -16.80 16 7 C -0.14 -1.65 3.02 -11.74 -0.04 -1.68 16 8 H 0.16 1.42 8.14 -2.39 -0.02 1.40 16 9 C -0.09 -0.96 4.84 30.59 0.15 -0.82 16 10 C 0.11 2.46 5.54 86.38 0.48 2.94 16 11 N -0.72 -17.20 5.56 -463.07 -2.57 -19.77 16 12 C 0.51 18.44 7.83 87.66 0.69 19.12 16 13 O -0.59 -27.48 15.98 -3.01 -0.05 -27.53 16 14 C -0.12 -4.33 5.64 29.85 0.17 -4.16 16 15 C 0.00 0.14 3.33 29.85 0.10 0.24 16 16 C -0.53 -30.63 9.66 25.60 0.25 -30.39 16 17 H 0.05 3.23 7.99 -2.91 -0.02 3.21 16 18 C 0.01 0.86 5.47 84.65 0.46 1.33 16 19 N -0.94 -59.38 13.96 21.45 0.30 -59.08 16 20 Si 0.94 47.64 27.47 68.60 1.88 49.53 16 21 H -0.27 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 23 H -0.26 -13.35 6.54 99.48 0.65 -12.70 16 24 H 0.11 -0.38 8.14 -2.39 -0.02 -0.40 16 25 H 0.11 -0.51 8.14 -2.39 -0.02 -0.53 16 26 H 0.09 -0.09 8.14 -2.38 -0.02 -0.11 16 27 H 0.44 6.19 8.96 -213.92 -1.92 4.27 16 28 H 0.08 0.90 8.12 -2.39 -0.02 0.88 16 29 H 0.14 0.41 8.12 -2.39 -0.02 0.39 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.04 1.33 6.46 -2.39 -0.02 1.31 16 32 H 0.42 6.51 8.47 -92.71 -0.79 5.72 16 33 H 0.10 3.49 8.14 -2.38 -0.02 3.47 16 34 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 35 H 0.01 0.55 7.15 -2.38 -0.02 0.53 16 36 H 0.00 0.19 7.53 -2.39 -0.02 0.18 16 37 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -86.89 318.43 0.16 -86.73 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -1.66 Total: 2.19 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 4.04 Total: -0.29 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -4.00 Total: -93.82 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -0.10 Total: -44.33 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 1.88 Total: 49.53 kcal Total: -86.89 0.16 -86.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144233380.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.296 kcal (2) G-P(sol) polarization free energy of solvation -86.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds