Wall clock time and date at job start Mon Mar 30 2020 01:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47395 * 2 1 4 4 O 1.34261 * 126.52235 * 269.97627 * 3 2 1 5 5 C 1.34047 * 108.22714 * 179.97438 * 4 3 2 6 6 N 1.29934 * 109.24161 * 359.97438 * 5 4 3 7 7 C 1.36059 * 108.48127 * 0.02562 * 6 5 4 8 8 C 1.47419 * 126.45311 * 179.97438 * 7 6 5 9 9 O 1.21610 * 120.00120 * 180.02562 * 8 7 6 10 10 N 1.34782 * 119.99976 * 0.02562 * 8 7 6 11 11 C 1.46499 * 119.99886 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.46762 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.47297 * 179.97438 * 12 11 10 14 14 N 1.46500 * 109.47241 * 180.02562 * 13 12 11 15 15 C 1.36937 * 119.99542 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00145 * 359.97438 * 15 14 13 17 17 C 1.38809 * 119.99632 * 179.97438 * 15 14 13 18 18 N 1.31621 * 120.00128 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99948 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46992 * 60.00233 * 19 17 15 21 21 H 1.48502 * 109.47199 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47390 * 300.00182 * 19 17 15 23 23 H 1.09004 * 109.47189 * 300.00300 * 1 2 3 24 24 H 1.08998 * 109.46877 * 59.99613 * 1 2 3 25 25 H 1.08995 * 109.47472 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46754 * 239.99864 * 2 1 3 27 27 H 1.09003 * 109.46981 * 119.99654 * 2 1 3 28 28 H 1.08002 * 125.38061 * 180.02562 * 5 4 3 29 29 H 0.96999 * 119.99524 * 0.02562 * 10 8 7 30 30 H 1.09004 * 109.46769 * 299.99722 * 11 10 8 31 31 H 1.09000 * 109.47350 * 59.99852 * 11 10 8 32 32 H 1.08996 * 109.47362 * 299.99677 * 12 11 10 33 33 H 1.09000 * 109.47356 * 59.99798 * 12 11 10 34 34 H 1.08996 * 109.46876 * 300.00251 * 13 12 11 35 35 H 1.09000 * 109.46857 * 59.99769 * 13 12 11 36 36 H 0.97000 * 119.99910 * 359.97438 * 14 13 12 37 37 H 0.96998 * 119.99810 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2992 2.1739 -1.0790 5 6 2.7228 3.3741 -0.6582 6 7 2.7286 3.3948 0.6410 7 6 2.3011 2.1850 1.0936 8 6 2.1566 1.7783 2.5031 9 8 1.7623 0.6607 2.7762 10 7 2.4613 2.6450 3.4893 11 6 2.3181 2.2407 4.8900 12 6 2.7257 3.4012 5.8000 13 6 2.5756 2.9792 7.2630 14 7 2.9652 4.0906 8.1343 15 6 2.9129 3.9447 9.4949 16 1 2.5840 3.0106 9.9256 17 6 3.2826 4.9976 10.3204 18 7 3.6839 6.1360 9.7955 19 14 3.2106 4.7990 12.1765 20 1 4.1044 3.6877 12.5904 21 1 3.6526 6.0588 12.8267 22 1 1.8170 4.4928 12.5879 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.0126 4.1946 -1.2979 29 1 2.7754 3.5365 3.2714 30 1 1.2800 1.9726 5.0865 31 1 2.9589 1.3813 5.0875 32 1 3.7636 3.6697 5.6036 33 1 2.0846 4.2603 5.6024 34 1 1.5375 2.7109 7.4591 35 1 3.2164 2.1199 7.4608 36 1 3.2610 4.9295 7.7474 37 1 3.9419 6.8718 10.3724 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156029265.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:31 Heat of formation + Delta-G solvation = -44.190129 kcal Electronic energy + Delta-G solvation = -19301.556320 eV Core-core repulsion = 16079.396070 eV Total energy + Delta-G solvation = -3222.160251 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.47116 -40.63370 -37.56798 -36.10634 -35.80810 -35.04888 -33.73146 -31.44355 -30.20789 -27.31556 -25.60007 -24.64296 -24.05617 -22.65316 -22.38045 -21.40004 -19.43116 -18.91708 -17.88735 -17.33102 -17.08813 -16.80174 -16.52944 -15.92292 -15.61050 -15.55725 -15.28063 -15.11359 -14.57797 -14.40377 -13.91101 -13.56949 -13.31192 -12.79168 -12.70070 -12.62503 -12.47049 -12.45120 -12.21619 -12.10148 -12.07042 -11.81256 -11.77910 -11.19141 -10.94028 -10.28490 -9.91224 -9.02771 -7.96561 -5.26307 0.01957 1.03785 1.47490 1.51067 1.54349 1.57226 2.06793 2.19208 2.56279 3.09314 3.37074 3.54383 3.71435 3.76661 4.05359 4.08111 4.23224 4.26207 4.29110 4.44051 4.55252 4.68070 4.70983 4.77456 4.84622 4.93868 5.09865 5.17106 5.23016 5.27138 5.29447 5.35609 5.48209 6.24807 6.27052 6.56675 7.03646 7.31990 8.06634 8.30389 9.26956 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.043374 B = 0.002772 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.388807 B =10096.989409 C =10630.595948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.047 4.047 3 C 0.049 3.951 4 O -0.197 6.197 5 C 0.197 3.803 6 N -0.497 5.497 7 C -0.105 4.105 8 C 0.595 3.405 9 O -0.560 6.560 10 N -0.706 5.706 11 C 0.134 3.866 12 C -0.120 4.120 13 C 0.154 3.846 14 N -0.748 5.748 15 C -0.251 4.251 16 H 0.077 0.923 17 C -0.076 4.076 18 N -0.970 5.970 19 Si 0.977 3.023 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.277 1.277 23 H 0.040 0.960 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.111 0.889 27 H 0.102 0.898 28 H 0.305 0.695 29 H 0.414 0.586 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.375 0.625 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.777 -9.350 -26.684 28.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.084 4.084 3 C -0.009 4.009 4 O -0.083 6.083 5 C -0.032 4.032 6 N -0.225 5.225 7 C -0.223 4.223 8 C 0.382 3.618 9 O -0.439 6.439 10 N -0.356 5.356 11 C 0.011 3.989 12 C -0.158 4.158 13 C 0.027 3.973 14 N -0.391 5.391 15 C -0.383 4.383 16 H 0.094 0.906 17 C -0.268 4.268 18 N -0.620 5.620 19 Si 0.805 3.195 20 H -0.203 1.203 21 H -0.220 1.220 22 H -0.203 1.203 23 H 0.059 0.941 24 H 0.084 0.916 25 H 0.106 0.894 26 H 0.129 0.871 27 H 0.120 0.880 28 H 0.319 0.681 29 H 0.251 0.749 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.207 0.793 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.913 -9.722 -25.927 27.965 hybrid contribution 0.242 0.644 0.596 0.910 sum -3.671 -9.078 -25.331 27.158 Atomic orbital electron populations 1.21680 0.92471 1.03848 1.01740 1.20464 0.97513 0.84516 1.05943 1.24095 0.97451 0.96133 0.83191 1.84417 1.63684 1.24595 1.35631 1.29178 0.96067 0.87145 0.90792 1.70721 1.18813 1.20986 1.12020 1.21373 1.12958 0.92851 0.95103 1.16988 0.77113 0.84258 0.83460 1.90760 1.48395 1.20933 1.83849 1.45795 1.66497 1.17508 1.05832 1.21194 1.01887 0.97221 0.78647 1.21707 1.02430 0.97962 0.93686 1.20667 0.97259 0.90536 0.88846 1.42556 1.80222 1.13693 1.02645 1.19634 1.36316 0.98357 0.83999 0.90557 1.25621 1.02512 0.95913 1.02772 1.69811 1.52472 1.04261 1.35506 0.85166 0.78050 0.76516 0.79754 1.20284 1.21965 1.20297 0.94113 0.91594 0.89365 0.87099 0.88022 0.68055 0.74945 0.91205 0.91161 0.91053 0.91074 0.95724 0.95711 0.79322 0.93871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.89 71.98 0.71 -1.32 16 2 C -0.05 -0.74 5.93 29.85 0.18 -0.57 16 3 C 0.05 0.95 6.69 25.19 0.17 1.12 16 4 O -0.20 -3.02 10.73 0.37 0.00 -3.02 16 5 C 0.20 2.47 13.19 130.52 1.72 4.19 16 6 N -0.50 -10.41 11.06 -305.16 -3.37 -13.78 16 7 C -0.10 -2.52 6.99 40.41 0.28 -2.24 16 8 C 0.60 16.84 7.81 86.66 0.68 17.51 16 9 O -0.56 -17.84 14.80 -4.06 -0.06 -17.90 16 10 N -0.71 -18.86 5.55 -466.37 -2.59 -21.45 16 11 C 0.13 3.78 5.67 86.38 0.49 4.27 16 12 C -0.12 -3.79 5.44 30.59 0.17 -3.62 16 13 C 0.15 6.21 6.26 86.38 0.54 6.75 16 14 N -0.75 -38.97 5.60 -343.45 -1.92 -40.89 16 15 C -0.25 -14.37 9.99 84.03 0.84 -13.53 16 16 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 17 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 18 N -0.97 -60.08 13.06 21.65 0.28 -59.80 16 19 Si 0.98 46.60 29.55 68.60 2.03 48.63 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 24 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.10 1.98 6.48 -2.39 -0.02 1.97 16 28 H 0.30 0.07 8.06 -2.91 -0.02 0.05 16 29 H 0.41 10.20 8.20 -92.71 -0.76 9.44 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.37 20.52 7.67 -92.71 -0.71 19.81 16 37 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -73.38 323.02 0.23 -73.15 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: -0.38 Total: 26.46 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 6.24 Total: 8.60 kcal Atomic # 7 Polarization: -128.32 SS G_CDS: -7.60 Total: -135.92 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.06 Total: -20.92 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -73.38 0.23 -73.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156029265.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.962 kcal (2) G-P(sol) polarization free energy of solvation -73.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds