Wall clock time and date at job start Mon Mar 30 2020 01:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46720 * 2 1 4 4 N 1.33695 * 126.27548 * 270.13553 * 3 2 1 5 5 C 1.30610 * 108.99544 * 180.26319 * 4 3 2 6 6 O 1.33662 * 109.15586 * 359.76702 * 5 4 3 7 7 C 1.35337 * 107.68362 * 359.97438 * 6 5 4 8 8 C 1.46726 * 126.64589 * 179.97438 * 7 6 5 9 9 O 1.21682 * 120.00122 * 180.02562 * 8 7 6 10 10 N 1.34774 * 119.99633 * 0.02999 * 8 7 6 11 11 C 1.46506 * 120.00072 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47289 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.47131 * 180.02562 * 12 11 10 14 14 N 1.46499 * 109.47369 * 179.97438 * 13 12 11 15 15 C 1.36937 * 120.00316 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99647 * 359.97438 * 15 14 13 17 17 C 1.38814 * 120.00249 * 180.02562 * 15 14 13 18 18 N 1.31618 * 119.99665 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00093 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46901 * 89.99820 * 19 17 15 21 21 H 1.48498 * 109.47318 * 209.99684 * 19 17 15 22 22 H 1.48497 * 109.47034 * 330.00076 * 19 17 15 23 23 H 1.08999 * 109.47564 * 59.99804 * 1 2 3 24 24 H 1.09004 * 109.47381 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47051 * 299.99794 * 1 2 3 26 26 H 1.08998 * 109.46563 * 240.00564 * 2 1 3 27 27 H 1.08999 * 109.47564 * 120.00196 * 2 1 3 28 28 H 1.08005 * 125.42327 * 179.75279 * 5 4 3 29 29 H 0.97001 * 120.00676 * 359.97438 * 10 8 7 30 30 H 1.09001 * 109.47060 * 300.00359 * 11 10 8 31 31 H 1.09004 * 109.47073 * 59.99848 * 11 10 8 32 32 H 1.09001 * 109.46832 * 299.99854 * 12 11 10 33 33 H 1.08996 * 109.46952 * 59.99873 * 12 11 10 34 34 H 1.09001 * 109.46997 * 299.99574 * 13 12 11 35 35 H 1.09004 * 109.47298 * 59.99717 * 13 12 11 36 36 H 0.96998 * 119.99822 * 0.02562 * 14 13 12 37 37 H 0.97001 * 119.99952 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2934 2.1675 -1.0778 5 6 2.7153 3.3412 -0.6899 6 8 2.7316 3.3818 0.6460 7 6 2.3006 2.1816 1.0991 8 6 2.1569 1.7752 2.5016 9 8 1.7563 0.6588 2.7736 10 7 2.4684 2.6384 3.4886 11 6 2.3243 2.2329 4.8891 12 6 2.7405 3.3894 5.8003 13 6 2.5906 2.9657 7.2627 14 7 2.9897 4.0727 8.1353 15 6 2.9383 3.9251 9.4957 16 1 2.6032 2.9927 9.9254 17 6 3.3159 4.9743 10.3225 18 7 3.7238 6.1108 9.7988 19 14 3.2451 4.7732 12.1783 20 1 4.5439 4.2464 12.6689 21 1 2.9750 6.0901 12.8090 22 1 2.1601 3.8230 12.5321 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8932 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.0051 4.1500 -1.3443 29 1 2.7880 3.5283 3.2719 30 1 1.2848 1.9712 5.0864 31 1 2.9598 1.3691 5.0844 32 1 3.7800 3.6514 5.6030 33 1 2.1047 4.2528 5.6048 34 1 1.5513 2.7033 7.4603 35 1 3.2267 2.1022 7.4579 36 1 3.2896 4.9105 7.7494 37 1 3.9873 6.8441 10.3765 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166282590.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:59 Heat of formation + Delta-G solvation = -42.138751 kcal Electronic energy + Delta-G solvation = -19330.243922 eV Core-core repulsion = 16108.172625 eV Total energy + Delta-G solvation = -3222.071296 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.50511 -40.70064 -37.64121 -36.81385 -35.87716 -34.02403 -33.76490 -31.67814 -30.45876 -27.24337 -25.60484 -24.69756 -24.09750 -22.64878 -22.34000 -21.50087 -19.49067 -18.94023 -17.97127 -17.48497 -17.30777 -16.77002 -16.54879 -15.91470 -15.53045 -15.48750 -15.29538 -15.02107 -14.66698 -14.40039 -13.90037 -13.73420 -13.32180 -12.82573 -12.63266 -12.52869 -12.47110 -12.21222 -12.12279 -12.08002 -12.04604 -11.96453 -11.79685 -11.23700 -10.94891 -10.40655 -9.95379 -9.02423 -7.97107 -5.26314 -0.27029 1.38171 1.38581 1.48022 1.49554 1.58166 1.92230 2.09199 2.56073 3.09379 3.37066 3.59559 3.65881 3.73460 4.06099 4.24831 4.26346 4.30547 4.38479 4.42357 4.47858 4.68432 4.71240 4.76909 4.85561 4.98167 5.06236 5.18034 5.20139 5.30083 5.30159 5.33668 5.48812 6.21183 6.26162 6.53275 6.89223 7.32178 8.07018 8.30267 9.26540 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.043195 B = 0.002788 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.071541 B =10039.475172 C =10577.127656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.054 4.054 3 C 0.078 3.922 4 N -0.522 5.522 5 C 0.228 3.772 6 O -0.193 6.193 7 C -0.136 4.136 8 C 0.605 3.395 9 O -0.541 6.541 10 N -0.706 5.706 11 C 0.133 3.867 12 C -0.120 4.120 13 C 0.152 3.848 14 N -0.748 5.748 15 C -0.249 4.249 16 H 0.076 0.924 17 C -0.076 4.076 18 N -0.969 5.969 19 Si 0.975 3.025 20 H -0.286 1.286 21 H -0.294 1.294 22 H -0.269 1.269 23 H 0.057 0.943 24 H 0.080 0.920 25 H 0.041 0.959 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.309 0.691 29 H 0.415 0.585 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.375 0.625 37 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.073 -7.010 -23.954 25.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.092 4.092 3 C -0.045 4.045 4 N -0.251 5.251 5 C 0.004 3.996 6 O -0.079 6.079 7 C -0.191 4.191 8 C 0.391 3.609 9 O -0.421 6.421 10 N -0.357 5.357 11 C 0.010 3.990 12 C -0.158 4.158 13 C 0.025 3.975 14 N -0.391 5.391 15 C -0.381 4.381 16 H 0.094 0.906 17 C -0.268 4.268 18 N -0.620 5.620 19 Si 0.804 3.196 20 H -0.213 1.213 21 H -0.220 1.220 22 H -0.194 1.194 23 H 0.076 0.924 24 H 0.099 0.901 25 H 0.060 0.940 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.324 0.676 29 H 0.252 0.748 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.207 0.793 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.450 -8.024 -24.155 25.686 hybrid contribution 0.479 1.226 1.479 1.980 sum -2.971 -6.798 -22.676 23.858 Atomic orbital electron populations 1.21590 0.93150 1.03141 1.01272 1.20198 0.97194 0.87453 1.04336 1.22312 0.96896 0.98635 0.86694 1.70384 1.18837 1.04530 1.31311 1.29614 0.93380 0.97683 0.78922 1.84509 1.64619 1.33261 1.25528 1.22664 1.14303 0.86404 0.95761 1.16446 0.77871 0.84583 0.81984 1.90849 1.48049 1.20727 1.82465 1.45850 1.66219 1.17567 1.06064 1.21241 1.02165 0.97398 0.78234 1.21713 1.02596 0.97995 0.93531 1.20679 0.97230 0.90588 0.88955 1.42556 1.79848 1.14096 1.02610 1.19656 1.35902 0.98484 0.84040 0.90599 1.25593 1.02575 0.95984 1.02637 1.69807 1.52320 1.04518 1.35357 0.85120 0.77921 0.76592 0.80016 1.21305 1.22049 1.19429 0.92384 0.90133 0.94003 0.88871 0.89392 0.67645 0.74837 0.90947 0.90919 0.90814 0.90815 0.95743 0.95727 0.79277 0.93896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 9.89 71.98 0.71 -1.71 16 2 C -0.05 -1.08 5.92 29.85 0.18 -0.90 16 3 C 0.08 1.71 6.41 41.83 0.27 1.98 16 4 N -0.52 -9.88 11.26 -303.13 -3.41 -13.29 16 5 C 0.23 2.73 13.21 130.42 1.72 4.45 16 6 O -0.19 -3.30 10.57 -7.00 -0.07 -3.38 16 7 C -0.14 -3.05 7.18 24.05 0.17 -2.88 16 8 C 0.61 15.42 7.79 86.46 0.67 16.09 16 9 O -0.54 -16.41 14.80 -4.29 -0.06 -16.47 16 10 N -0.71 -15.97 5.55 -467.03 -2.59 -18.56 16 11 C 0.13 3.34 5.67 86.38 0.49 3.83 16 12 C -0.12 -3.45 5.44 30.59 0.17 -3.29 16 13 C 0.15 5.85 6.26 86.38 0.54 6.39 16 14 N -0.75 -37.72 5.60 -343.45 -1.92 -39.64 16 15 C -0.25 -13.94 9.99 84.03 0.84 -13.10 16 16 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 17 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 18 N -0.97 -59.00 13.06 21.65 0.28 -58.72 16 19 Si 0.97 45.94 29.55 68.60 2.03 47.97 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.09 1.98 6.47 -2.39 -0.02 1.96 16 28 H 0.31 -0.29 8.06 -2.91 -0.02 -0.32 16 29 H 0.42 7.78 8.27 -92.71 -0.77 7.01 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.38 19.85 7.67 -92.71 -0.71 19.14 16 37 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -72.03 323.01 0.09 -71.94 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -0.38 Total: 23.15 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 6.23 Total: 7.00 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -7.65 Total: -130.21 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.14 Total: -19.85 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -72.03 0.09 -71.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166282590.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.806 kcal (2) G-P(sol) polarization free energy of solvation -72.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds