Wall clock time and date at job start Mon Mar 30 2020 01:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47040 * 2 1 4 4 C 1.38322 * 119.95719 * 270.02154 * 3 2 1 5 5 C 1.38282 * 120.15864 * 179.97438 * 4 3 2 6 6 C 1.38103 * 120.07917 * 359.75207 * 5 4 3 7 7 C 1.38954 * 119.91828 * 0.47727 * 6 5 4 8 8 N 1.39596 * 120.07662 * 179.79142 * 7 6 5 9 9 C 1.38681 * 120.00152 * 4.13015 * 8 7 6 10 10 C 1.38817 * 120.29627 * 256.13050 * 9 8 7 11 11 C 1.38111 * 120.02193 * 180.25390 * 10 9 8 12 12 C 1.38930 * 120.63783 * 359.74531 * 11 10 9 13 13 C 1.36431 * 120.60100 * 359.97238 * 12 11 10 14 14 C 1.40747 * 119.95486 * 0.02600 * 13 12 11 15 15 C 1.41010 * 120.30713 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99965 * 154.34317 * 15 14 13 17 17 C 1.39911 * 120.00158 * 334.33571 * 15 14 13 18 18 N 1.30886 * 119.99766 * 329.28956 * 17 15 14 19 19 Si 1.86795 * 119.99984 * 149.29444 * 17 15 14 20 20 H 1.48504 * 109.47003 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.46869 * 299.99732 * 19 17 15 22 22 H 1.48489 * 109.47484 * 59.99680 * 19 17 15 23 23 C 1.38059 * 119.96220 * 90.00316 * 3 2 1 24 24 H 1.09007 * 109.47254 * 299.99744 * 1 2 3 25 25 H 1.09003 * 109.47552 * 60.00190 * 1 2 3 26 26 H 1.09000 * 109.47406 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46803 * 240.00036 * 2 1 3 28 28 H 1.08997 * 109.46980 * 120.00189 * 2 1 3 29 29 H 1.07998 * 119.92518 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.96219 * 180.02562 * 5 4 3 31 31 H 1.08007 * 120.04120 * 180.25608 * 6 5 4 32 32 H 0.96999 * 119.99587 * 184.12026 * 8 7 6 33 33 H 1.08000 * 119.98924 * 0.02562 * 10 9 8 34 34 H 1.08000 * 119.68644 * 179.76301 * 11 10 9 35 35 H 1.07995 * 119.70400 * 179.97438 * 12 11 10 36 36 H 1.08003 * 120.02275 * 180.02562 * 13 12 11 37 37 H 0.97004 * 120.00421 * 352.86500 * 18 17 15 38 38 H 1.07999 * 120.03711 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0722 -1.1984 5 6 2.7225 3.3761 -1.2033 6 6 2.9497 4.0344 -0.0107 7 6 2.7245 3.3816 1.1951 8 7 2.9572 4.0424 2.4025 9 6 3.3310 5.3779 2.4013 10 6 4.6501 5.7360 2.6436 11 6 5.0152 7.0680 2.6462 12 6 4.0741 8.0605 2.4027 13 6 2.7718 7.7373 2.1559 14 6 2.3722 6.3878 2.1472 15 6 1.0280 6.0453 1.8935 16 1 0.7860 5.0763 1.4826 17 6 0.0079 6.9607 2.1743 18 7 0.1471 7.8148 3.1562 19 14 -1.5527 6.9638 1.1477 20 1 -2.4695 8.0215 1.6440 21 1 -1.2106 7.2323 -0.2722 22 1 -2.2184 5.6409 1.2549 23 6 2.2622 2.0709 1.1961 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.0816 1.5613 -2.1326 30 1 2.9005 3.8818 -2.1408 31 1 3.3054 5.0542 -0.0152 32 1 2.8572 3.5675 3.2424 33 1 5.3905 4.9730 2.8338 34 1 6.0422 7.3407 2.8392 35 1 4.3760 9.0974 2.4088 36 1 2.0480 8.5164 1.9674 37 1 0.9082 7.7471 3.7538 38 1 2.0827 1.5616 2.1314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175554908.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:40 Heat of formation + Delta-G solvation = 25.977938 kcal Electronic energy + Delta-G solvation = -19645.680293 eV Core-core repulsion = 16837.412021 eV Total energy + Delta-G solvation = -2808.268272 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.132 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.26143 -37.80620 -34.98782 -33.94740 -33.07279 -29.98130 -29.44085 -28.66061 -27.27843 -24.94532 -23.58748 -21.79165 -21.22770 -21.01694 -19.44968 -17.90852 -16.60346 -16.12572 -15.32598 -14.80213 -14.43219 -14.41012 -13.94048 -13.88708 -13.20490 -13.05662 -12.68634 -12.64325 -12.41075 -12.09819 -11.82167 -11.54183 -11.31645 -11.08629 -10.94234 -10.78254 -10.64362 -10.44448 -10.33550 -10.09680 -9.77552 -9.31583 -8.92616 -8.16112 -7.72852 -7.69325 -7.26945 -6.61158 -4.47715 2.02603 2.24185 2.66086 2.74842 3.13549 3.24304 3.34310 3.96500 4.37446 4.46237 4.51130 5.09892 5.19272 5.36064 5.54145 5.55894 5.75480 5.77384 5.95287 5.99632 6.04991 6.06909 6.18287 6.23983 6.34833 6.40512 6.52427 6.62033 6.85172 6.99836 7.07638 7.12101 7.24057 7.25783 7.42814 7.60149 7.68331 7.75436 7.87386 8.07122 8.14631 8.43596 8.50717 8.76892 8.93729 9.92033 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.014921 B = 0.007459 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.081109 B = 3753.149886 C = 5009.226875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.045 4.045 4 C -0.194 4.194 5 C -0.077 4.077 6 C -0.178 4.178 7 C 0.240 3.760 8 N -0.663 5.663 9 C -0.005 4.005 10 C -0.074 4.074 11 C -0.257 4.257 12 C -0.081 4.081 13 C -0.212 4.212 14 C 0.101 3.899 15 C -0.502 4.502 16 H 0.082 0.918 17 C 0.044 3.956 18 N -0.783 5.783 19 Si 1.056 2.944 20 H -0.274 1.274 21 H -0.272 1.272 22 H -0.274 1.274 23 C -0.208 4.208 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.122 0.878 32 H 0.390 0.610 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.298 0.702 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.904 -8.901 -4.202 9.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.046 4.046 4 C -0.214 4.214 5 C -0.095 4.095 6 C -0.200 4.200 7 C 0.135 3.865 8 N -0.283 5.283 9 C -0.099 4.099 10 C -0.094 4.094 11 C -0.277 4.277 12 C -0.100 4.100 13 C -0.232 4.232 14 C 0.096 3.904 15 C -0.529 4.529 16 H 0.100 0.900 17 C -0.180 4.180 18 N -0.404 5.404 19 Si 0.879 3.121 20 H -0.199 1.199 21 H -0.197 1.197 22 H -0.200 1.200 23 C -0.231 4.231 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.140 0.860 32 H 0.224 0.776 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.482 -7.865 -4.370 9.011 hybrid contribution 1.478 -0.793 0.637 1.795 sum 0.996 -8.659 -3.733 9.481 Atomic orbital electron populations 1.21733 0.95085 1.00970 1.02472 1.20476 0.95940 0.93387 1.01962 1.19406 0.97331 0.95051 0.92782 1.20541 1.08437 0.95867 0.96593 1.20791 0.97389 0.94260 0.97107 1.20716 1.07566 1.00815 0.90920 1.17948 0.91104 0.90423 0.87003 1.41191 1.73827 1.09070 1.04163 1.17253 0.92530 0.82747 1.17340 1.20806 0.94159 0.95317 0.99071 1.20133 0.97829 0.92632 1.17093 1.20392 0.93865 0.97052 0.98670 1.20806 0.95363 0.96129 1.10856 1.17802 0.93059 0.90693 0.88799 1.20457 0.91446 1.03439 1.37571 0.89992 1.27021 1.03802 0.91074 0.96072 1.70482 1.30007 1.31068 1.08866 0.83770 0.74230 0.77582 0.76520 1.19860 1.19750 1.19970 1.20302 1.10647 0.94688 0.97497 0.92483 0.92560 0.93000 0.91593 0.91661 0.87532 0.87062 0.86039 0.77558 0.89202 0.89232 0.89290 0.87883 0.88864 0.87203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.89 37.16 0.37 -1.35 16 2 C -0.08 -1.01 6.06 -27.88 -0.17 -1.17 16 3 C -0.04 -0.72 5.13 -104.66 -0.54 -1.26 16 4 C -0.19 -3.15 9.70 -39.53 -0.38 -3.53 16 5 C -0.08 -1.36 10.04 -39.61 -0.40 -1.75 16 6 C -0.18 -3.64 8.87 -39.37 -0.35 -3.98 16 7 C 0.24 4.81 5.41 -83.78 -0.45 4.36 16 8 N -0.66 -13.70 4.85 -8.04 -0.04 -13.74 16 9 C -0.01 -0.12 4.59 -83.28 -0.38 -0.50 16 10 C -0.07 -1.61 9.96 -39.41 -0.39 -2.00 16 11 C -0.26 -5.56 10.03 -39.37 -0.40 -5.95 16 12 C -0.08 -1.83 9.97 -39.98 -0.40 -2.22 16 13 C -0.21 -5.22 8.12 -39.29 -0.32 -5.54 16 14 C 0.10 2.53 4.74 -106.63 -0.51 2.03 16 15 C -0.50 -12.84 8.30 -37.91 -0.31 -13.16 16 16 H 0.08 2.15 6.59 -52.49 -0.35 1.81 16 17 C 0.04 1.09 4.78 -17.33 -0.08 1.01 16 18 N -0.78 -20.14 12.38 55.55 0.69 -19.46 16 19 Si 1.06 21.66 30.03 -169.99 -5.10 16.56 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 23 C -0.21 -3.67 9.55 -39.37 -0.38 -4.05 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 28 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 29 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.12 2.74 6.72 -52.48 -0.35 2.39 16 32 H 0.39 7.31 8.83 -40.82 -0.36 6.94 16 33 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 35 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.10 2.63 6.72 -52.48 -0.35 2.28 16 37 H 0.30 7.88 7.23 -40.82 -0.30 7.58 16 38 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 318.77 15.07 4.80 4.80 Total: -1.00 -26.26 318.77 -9.89 -36.15 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -5.15 Total: 14.76 kcal Atomic # 6 Polarization: -34.00 SS G_CDS: -5.09 Total: -39.09 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.65 Total: -33.19 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.10 Total: 16.56 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.26 -9.89 -36.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175554908.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.130 kcal (2) G-P(sol) polarization free energy of solvation -26.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds