Wall clock time and date at job start Mon Mar 30 2020 00:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38869 * 119.24236 * 2 1 4 4 C 1.36887 * 119.79514 * 179.97438 * 3 2 1 5 5 C 1.41127 * 118.39619 * 359.74570 * 4 3 2 6 6 C 1.40888 * 120.72173 * 180.24887 * 5 4 3 7 7 H 1.07996 * 119.99967 * 150.74403 * 6 5 4 8 8 C 1.40070 * 119.99550 * 330.74107 * 6 5 4 9 9 N 1.30774 * 119.99688 * 162.90632 * 8 6 5 10 10 Si 1.86801 * 120.00632 * 342.90993 * 8 6 5 11 11 H 1.48497 * 109.47130 * 90.53285 * 10 8 6 12 12 H 1.48499 * 109.47348 * 210.53625 * 10 8 6 13 13 H 1.48504 * 109.46706 * 330.53486 * 10 8 6 14 14 C 1.41873 * 118.55824 * 0.49153 * 5 4 3 15 15 C 1.47819 * 119.98839 * 179.77891 * 14 5 4 16 16 C 1.39698 * 120.14960 * 316.78788 * 15 14 5 17 17 C 1.37901 * 119.84447 * 180.30445 * 16 15 14 18 18 C 1.38428 * 120.14805 * 359.73840 * 17 16 15 19 19 C 1.50700 * 119.84351 * 179.97438 * 18 17 16 20 20 C 1.38373 * 120.30744 * 359.97438 * 18 17 16 21 21 C 1.50706 * 119.92208 * 180.02562 * 20 18 17 22 22 C 1.37940 * 120.15261 * 0.02562 * 20 18 17 23 23 N 1.31734 * 119.24825 * 179.97438 * 2 1 3 24 24 H 1.08994 * 109.47383 * 270.02399 * 1 2 3 25 25 H 1.09002 * 109.47236 * 30.02782 * 1 2 3 26 26 H 1.09005 * 109.46923 * 150.02305 * 1 2 3 27 27 H 1.08000 * 120.10713 * 359.97438 * 3 2 1 28 28 H 1.08002 * 120.80329 * 180.02562 * 4 3 2 29 29 H 0.97005 * 120.00015 * 179.97438 * 9 8 6 30 30 H 1.07995 * 120.07881 * 0.02562 * 16 15 14 31 31 H 1.07992 * 119.92700 * 179.72593 * 17 16 15 32 32 H 1.08998 * 109.46648 * 270.02230 * 19 18 17 33 33 H 1.09001 * 109.47182 * 30.01466 * 19 18 17 34 34 H 1.08998 * 109.47500 * 150.02339 * 19 18 17 35 35 H 1.09000 * 109.46764 * 270.01918 * 21 20 18 36 36 H 1.08995 * 109.47019 * 30.02006 * 21 20 18 37 37 H 1.08998 * 109.46993 * 150.02642 * 21 20 18 38 38 H 1.08007 * 120.07363 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2117 0.0000 4 6 3.5542 1.2249 0.0005 5 6 4.2373 -0.0100 0.0066 6 6 5.6455 -0.0536 0.0127 7 1 6.1581 -0.8847 0.4740 8 6 6.3807 0.9811 -0.5798 9 7 7.6490 1.1272 -0.2966 10 14 5.5496 2.1523 -1.7743 11 1 5.0057 3.3159 -1.0290 12 1 6.5401 2.6244 -2.7748 13 1 4.4420 1.4476 -2.4686 14 6 3.4752 -1.2067 0.0011 15 6 4.1583 -2.5176 0.0023 16 6 5.2671 -2.7317 -0.8200 17 6 5.8957 -3.9592 -0.8186 18 6 5.4335 -4.9760 -0.0009 19 6 6.1253 -6.3148 -0.0052 20 6 4.3393 -4.7688 0.8205 21 6 3.8438 -5.8817 1.7076 22 6 3.7011 -3.5460 0.8290 23 7 2.1507 -1.1494 0.0005 24 1 -0.3634 0.0004 1.0276 25 1 -0.3634 0.8897 -0.5143 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6348 2.1408 -0.0004 28 1 4.0983 2.1579 0.0010 29 1 8.1583 1.8435 -0.7072 30 1 5.6285 -1.9394 -1.4586 31 1 6.7503 -4.1276 -1.4570 32 1 5.6680 -6.9575 -0.7575 33 1 7.1812 -6.1775 -0.2381 34 1 6.0269 -6.7779 0.9766 35 1 3.1004 -6.4708 1.1706 36 1 4.6801 -6.5215 1.9892 37 1 3.3925 -5.4577 2.6046 38 1 2.8469 -3.3858 1.4703 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240700529.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:41 Heat of formation + Delta-G solvation = 15.749785 kcal Electronic energy + Delta-G solvation = -19626.285072 eV Core-core repulsion = 16817.573274 eV Total energy + Delta-G solvation = -2808.711798 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.132 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.98754 -39.79802 -36.17411 -34.86692 -33.51945 -33.12414 -32.06547 -29.78411 -28.41689 -27.33997 -25.60849 -23.81043 -22.93632 -22.53150 -20.83790 -19.44109 -17.67520 -17.43625 -16.64255 -16.12836 -16.01805 -15.45866 -15.33311 -14.95900 -14.93812 -14.55050 -13.97295 -13.87407 -13.68479 -13.50762 -13.48455 -13.22868 -13.05646 -12.90138 -12.66835 -12.59034 -12.38031 -12.18347 -11.90701 -11.71218 -11.58416 -11.35210 -10.39804 -10.02911 -9.80323 -9.46234 -9.00363 -8.94411 -6.51108 0.11283 0.62403 0.66759 0.96894 1.18359 1.32549 1.40444 2.02052 2.53504 2.91808 3.45683 3.68364 4.03542 4.06795 4.15481 4.21158 4.29114 4.43395 4.52959 4.61057 4.64487 4.77937 4.79949 4.88338 4.93487 4.95591 4.96193 4.97210 5.10014 5.10297 5.19569 5.28798 5.33423 5.46241 5.54400 5.59828 5.74847 5.83892 5.95901 5.97116 6.19628 6.29341 6.54583 6.63596 7.56819 8.05136 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.015798 B = 0.007739 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.951024 B = 3617.308212 C = 5086.940953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.016 4.016 3 C -0.121 4.121 4 C -0.221 4.221 5 C 0.036 3.964 6 C -0.442 4.442 7 H 0.070 0.930 8 C 0.053 3.947 9 N -0.825 5.825 10 Si 0.959 3.041 11 H -0.250 1.250 12 H -0.271 1.271 13 H -0.265 1.265 14 C 0.026 3.974 15 C -0.021 4.021 16 C -0.110 4.110 17 C -0.130 4.130 18 C -0.102 4.102 19 C -0.107 4.107 20 C -0.101 4.101 21 C -0.106 4.106 22 C -0.115 4.115 23 N -0.460 5.460 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.144 0.856 28 H 0.117 0.883 29 H 0.298 0.702 30 H 0.107 0.893 31 H 0.134 0.866 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.091 -7.248 -0.396 8.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.156 4.156 3 C -0.140 4.140 4 C -0.246 4.246 5 C 0.031 3.969 6 C -0.471 4.471 7 H 0.088 0.912 8 C -0.164 4.164 9 N -0.450 5.450 10 Si 0.782 3.218 11 H -0.175 1.175 12 H -0.197 1.197 13 H -0.190 1.190 14 C -0.113 4.113 15 C -0.022 4.022 16 C -0.129 4.129 17 C -0.148 4.148 18 C -0.102 4.102 19 C -0.163 4.163 20 C -0.101 4.101 21 C -0.163 4.163 22 C -0.134 4.134 23 N -0.168 5.168 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.079 0.921 27 H 0.162 0.838 28 H 0.134 0.866 29 H 0.109 0.891 30 H 0.125 0.875 31 H 0.152 0.848 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.286 -7.901 -0.388 9.514 hybrid contribution 0.696 1.885 -0.398 2.048 sum -4.590 -6.016 -0.786 7.608 Atomic orbital electron populations 1.20392 0.87402 1.02714 1.02308 1.21245 0.97657 0.87879 1.08809 1.21599 0.94152 0.99376 0.98904 1.21411 0.95351 0.97188 1.10639 1.18652 0.94469 0.92229 0.91542 1.19320 0.89986 1.06096 1.31707 0.91156 1.26772 0.95160 0.97447 0.97070 1.69662 1.09736 1.29635 1.35947 0.85633 0.78598 0.78983 0.78559 1.17526 1.19661 1.18981 1.19893 0.88662 0.92267 1.10495 1.18497 0.95191 0.91644 0.96850 1.21307 0.95425 0.97273 0.98868 1.21117 1.00644 0.92505 1.00535 1.20141 0.96236 0.97294 0.96529 1.20854 0.99868 0.91909 1.03651 1.19982 0.96021 0.95245 0.98840 1.20842 1.02057 0.95643 0.97708 1.21136 0.99903 0.93048 0.99346 1.67034 1.09299 1.30381 1.10097 0.91160 0.89856 0.92146 0.83833 0.86572 0.89063 0.87472 0.84776 0.90015 0.91146 0.89789 0.90133 0.89330 0.91828 0.87093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.19 10.15 71.24 0.72 -1.47 16 2 C -0.02 -0.68 6.79 42.73 0.29 -0.39 16 3 C -0.12 -5.04 9.64 22.10 0.21 -4.82 16 4 C -0.22 -10.50 7.31 22.66 0.17 -10.34 16 5 C 0.04 1.88 5.12 -21.02 -0.11 1.77 16 6 C -0.44 -24.19 7.18 23.36 0.17 -24.02 16 7 H 0.07 4.18 6.70 -2.91 -0.02 4.16 16 8 C 0.05 2.74 5.44 85.29 0.46 3.20 16 9 N -0.83 -43.08 13.92 21.85 0.30 -42.77 16 10 Si 0.96 41.42 24.53 68.60 1.68 43.10 16 11 H -0.25 -10.05 6.47 99.48 0.64 -9.41 16 12 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 13 H -0.27 -12.16 6.99 99.48 0.70 -11.46 16 14 C 0.03 1.34 6.44 42.47 0.27 1.61 16 15 C -0.02 -0.99 5.27 -20.05 -0.11 -1.10 16 16 C -0.11 -4.96 7.86 22.54 0.18 -4.79 16 17 C -0.13 -4.83 9.68 22.23 0.22 -4.62 16 18 C -0.10 -3.28 5.89 -19.79 -0.12 -3.40 16 19 C -0.11 -2.34 9.60 71.24 0.68 -1.66 16 20 C -0.10 -3.40 5.87 -19.90 -0.12 -3.52 16 21 C -0.11 -2.54 9.60 71.24 0.68 -1.86 16 22 C -0.12 -4.77 9.31 22.54 0.21 -4.56 16 23 N -0.46 -22.06 10.05 -171.14 -1.72 -23.78 16 24 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.08 2.10 8.07 -2.39 -0.02 2.08 16 26 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 27 H 0.14 4.75 8.06 -2.91 -0.02 4.73 16 28 H 0.12 5.33 4.52 -2.91 -0.01 5.31 16 29 H 0.30 13.90 8.30 -92.70 -0.77 13.14 16 30 H 0.11 5.25 6.70 -2.91 -0.02 5.23 16 31 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 33 H 0.07 1.43 8.08 -2.39 -0.02 1.41 16 34 H 0.08 1.54 5.93 -2.39 -0.01 1.53 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.09 1.70 5.93 -2.39 -0.01 1.68 16 37 H 0.06 1.49 8.08 -2.39 -0.02 1.47 16 38 H 0.11 4.55 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -62.99 309.26 5.08 -57.92 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 0.99 Total: 25.48 kcal Atomic # 6 Polarization: -63.76 SS G_CDS: 3.82 Total: -59.94 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: -1.42 Total: -66.55 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 1.68 Total: 43.10 kcal Total: -62.99 5.08 -57.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240700529.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.666 kcal (2) G-P(sol) polarization free energy of solvation -62.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds