Wall clock time and date at job start Mon Mar 30 2020 01:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50702 * 109.47018 * 2 1 4 4 C 1.38416 * 119.92346 * 270.02610 * 3 2 1 5 5 C 1.38381 * 120.30686 * 179.97438 * 4 3 2 6 6 C 1.37937 * 120.14864 * 359.71224 * 5 4 3 7 7 C 1.39653 * 119.84608 * 0.56256 * 6 5 4 8 8 C 1.47826 * 120.15171 * 179.71726 * 7 6 5 9 9 N 1.32580 * 119.98903 * 136.27176 * 8 7 6 10 10 C 1.31745 * 121.71702 * 179.97438 * 9 8 7 11 11 C 1.50704 * 119.24289 * 179.97438 * 10 9 8 12 12 C 1.38865 * 121.50613 * 0.26166 * 10 9 8 13 13 C 1.36887 * 119.79941 * 359.45632 * 12 10 9 14 14 C 1.41120 * 118.39456 * 0.52890 * 13 12 10 15 15 C 1.40885 * 120.72310 * 179.72924 * 14 13 12 16 16 H 1.08001 * 120.00416 * 150.60370 * 15 14 13 17 17 C 1.40075 * 119.99601 * 330.59871 * 15 14 13 18 18 N 1.30766 * 120.00285 * 163.07228 * 17 15 14 19 19 Si 1.86805 * 119.99924 * 343.07587 * 17 15 14 20 20 H 1.48492 * 109.47458 * 90.36631 * 19 17 15 21 21 H 1.48501 * 109.46767 * 210.36722 * 19 17 15 22 22 H 1.48498 * 109.46890 * 330.36252 * 19 17 15 23 23 C 1.37898 * 119.92180 * 90.00185 * 3 2 1 24 24 H 1.08998 * 109.47042 * 59.99597 * 1 2 3 25 25 H 1.08997 * 109.46481 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46650 * 299.99547 * 1 2 3 27 27 H 1.09007 * 109.46832 * 240.00361 * 2 1 3 28 28 H 1.08999 * 109.47427 * 120.00029 * 2 1 3 29 29 H 1.08000 * 119.84970 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.92559 * 180.02562 * 5 4 3 31 31 H 1.08002 * 120.07912 * 180.30351 * 6 5 4 32 32 H 1.09004 * 109.46688 * 90.01022 * 11 10 9 33 33 H 1.08994 * 109.47091 * 330.00740 * 11 10 9 34 34 H 1.09003 * 109.46884 * 210.00096 * 11 10 9 35 35 H 1.07996 * 120.09924 * 179.73993 * 12 10 9 36 36 H 1.08004 * 120.80303 * 180.24483 * 13 12 10 37 37 H 0.97000 * 120.00540 * 180.02562 * 18 17 15 38 38 H 1.07990 * 120.07642 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2620 2.0720 -1.1996 5 6 2.7228 3.3768 -1.2089 6 6 2.9507 4.0395 -0.0208 7 6 2.7266 3.3866 1.1932 8 6 2.9746 4.0883 2.4705 9 7 2.1014 3.9866 3.4629 10 6 2.2886 4.5969 4.6154 11 6 1.2593 4.4433 5.7054 12 6 3.4096 5.3831 4.8466 13 6 4.3542 5.5261 3.8663 14 6 4.1474 4.8697 2.6343 15 6 5.0851 4.9878 1.5895 16 1 5.2067 4.1833 0.8793 17 6 5.8598 6.1489 1.4717 18 7 6.9395 6.1427 0.7340 19 14 5.3504 7.7065 2.3686 20 1 5.9792 7.7313 3.7136 21 1 5.7945 8.8921 1.5925 22 1 3.8727 7.7341 2.5123 23 6 2.2617 2.0694 1.1952 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8935 -0.5138 0.8900 29 1 2.0800 1.5597 -2.1328 30 1 2.8995 3.8792 -2.1485 31 1 3.3056 5.0595 -0.0294 32 1 1.5109 3.5816 6.3239 33 1 0.2762 4.2952 5.2586 34 1 1.2465 5.3419 6.3223 35 1 3.5381 5.8765 5.7986 36 1 5.2342 6.1304 4.0301 37 1 7.4761 6.9466 0.6528 38 1 2.0821 1.5601 2.1304 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241546045.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:07 Heat of formation + Delta-G solvation = 14.239930 kcal Electronic energy + Delta-G solvation = -19571.518402 eV Core-core repulsion = 16762.741132 eV Total energy + Delta-G solvation = -2808.777270 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.132 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.95218 -39.64601 -36.17595 -35.11806 -33.67841 -33.38789 -30.94610 -30.27814 -29.46805 -26.17078 -24.68921 -24.34681 -22.88535 -22.44562 -20.94965 -19.44224 -17.71644 -17.50403 -16.83460 -16.36790 -15.97163 -15.54860 -15.36345 -14.99048 -14.76933 -14.44311 -14.29545 -13.98704 -13.87473 -13.67975 -13.40292 -13.10423 -12.93793 -12.81121 -12.54967 -12.47326 -12.33125 -11.99016 -11.85993 -11.58299 -11.57006 -11.35344 -10.42879 -10.04719 -9.86004 -9.47858 -9.07905 -8.99061 -6.51219 0.12762 0.62802 0.67274 0.98713 1.18829 1.32975 1.40804 2.02292 2.53965 2.95797 3.45844 3.67667 3.95131 4.07140 4.15677 4.27528 4.35501 4.41843 4.50475 4.57375 4.61072 4.71940 4.77651 4.81594 4.84392 4.93723 4.96168 5.07046 5.11453 5.20046 5.25840 5.30244 5.35246 5.44249 5.53964 5.61275 5.72650 5.81834 5.96207 5.97095 6.19329 6.27827 6.54546 6.63961 7.56727 8.05431 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.016577 B = 0.007411 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.714570 B = 3777.355982 C = 5172.909915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.078 4.078 3 C -0.092 4.092 4 C -0.126 4.126 5 C -0.127 4.127 6 C -0.114 4.114 7 C -0.015 4.015 8 C 0.025 3.975 9 N -0.459 5.459 10 C -0.016 4.016 11 C -0.071 4.071 12 C -0.120 4.120 13 C -0.221 4.221 14 C 0.036 3.964 15 C -0.442 4.442 16 H 0.071 0.929 17 C 0.054 3.946 18 N -0.825 5.825 19 Si 0.958 3.042 20 H -0.250 1.250 21 H -0.271 1.271 22 H -0.265 1.265 23 C -0.116 4.116 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.149 0.851 30 H 0.138 0.862 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.144 0.856 36 H 0.117 0.883 37 H 0.298 0.702 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.029 -4.525 0.231 9.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 C -0.092 4.092 4 C -0.144 4.144 5 C -0.144 4.144 6 C -0.133 4.133 7 C -0.016 4.016 8 C -0.114 4.114 9 N -0.167 5.167 10 C -0.156 4.156 11 C -0.128 4.128 12 C -0.140 4.140 13 C -0.246 4.246 14 C 0.032 3.968 15 C -0.471 4.471 16 H 0.089 0.911 17 C -0.164 4.164 18 N -0.450 5.450 19 Si 0.782 3.218 20 H -0.175 1.175 21 H -0.197 1.197 22 H -0.190 1.190 23 C -0.135 4.135 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.060 0.940 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.167 0.833 30 H 0.156 0.844 31 H 0.125 0.875 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.161 0.839 36 H 0.134 0.866 37 H 0.109 0.891 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.520 -4.928 -0.011 9.843 hybrid contribution 1.297 1.434 0.393 1.973 sum -7.223 -3.494 0.383 8.033 Atomic orbital electron populations 1.21712 0.93960 1.02454 1.01696 1.20548 0.96775 0.90796 1.03390 1.20080 0.99291 0.97513 0.92278 1.21287 1.00416 0.94525 0.98144 1.21252 0.99974 0.95755 0.97469 1.21332 0.99455 1.00225 0.92279 1.18525 0.98183 0.93726 0.91116 1.19901 0.92468 1.05455 0.93623 1.67044 1.30189 1.19151 1.00357 1.21240 0.98349 1.01492 0.94544 1.20392 0.95607 1.02589 0.94239 1.21599 0.94322 0.98563 0.99514 1.21418 1.01536 1.07305 0.94361 1.18647 0.92185 0.92581 0.93433 1.19328 1.14286 1.02832 1.10648 0.91065 1.26761 0.92229 1.03065 0.94331 1.69653 1.10855 1.32061 1.32384 0.85640 0.80291 0.76920 0.78961 1.17550 1.19703 1.18974 1.21106 1.00697 0.93618 0.98043 0.92359 0.90504 0.94014 0.89253 0.91372 0.83307 0.84419 0.87502 0.91174 0.92152 0.89871 0.83864 0.86568 0.89059 0.87327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.90 71.98 0.71 -2.30 16 2 C -0.08 -1.90 6.06 29.85 0.18 -1.72 16 3 C -0.09 -3.02 5.13 -19.90 -0.10 -3.12 16 4 C -0.13 -3.93 9.70 22.35 0.22 -3.71 16 5 C -0.13 -4.54 10.03 22.23 0.22 -4.32 16 6 C -0.11 -5.04 7.87 22.54 0.18 -4.87 16 7 C -0.01 -0.68 5.26 -20.05 -0.11 -0.79 16 8 C 0.03 1.26 6.43 42.47 0.27 1.54 16 9 N -0.46 -21.87 10.05 -171.13 -1.72 -23.59 16 10 C -0.02 -0.69 6.79 42.72 0.29 -0.40 16 11 C -0.07 -2.18 10.15 71.24 0.72 -1.46 16 12 C -0.12 -5.00 9.64 22.10 0.21 -4.78 16 13 C -0.22 -10.46 7.31 22.66 0.17 -10.29 16 14 C 0.04 1.89 5.12 -21.03 -0.11 1.78 16 15 C -0.44 -23.98 7.21 23.36 0.17 -23.81 16 16 H 0.07 4.19 6.72 -2.91 -0.02 4.17 16 17 C 0.05 2.76 5.44 85.30 0.46 3.22 16 18 N -0.83 -42.80 13.92 21.85 0.30 -42.50 16 19 Si 0.96 41.17 24.53 68.60 1.68 42.85 16 20 H -0.25 -10.01 6.46 99.48 0.64 -9.37 16 21 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 22 H -0.27 -12.08 7.00 99.48 0.70 -11.39 16 23 C -0.12 -4.71 9.31 22.54 0.21 -4.50 16 24 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 25 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.09 1.78 8.09 -2.38 -0.02 1.76 16 28 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 29 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 30 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 31 H 0.11 5.14 6.75 -2.91 -0.02 5.12 16 32 H 0.07 1.94 8.14 -2.38 -0.02 1.93 16 33 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.08 2.09 8.07 -2.39 -0.02 2.07 16 35 H 0.14 4.72 8.06 -2.91 -0.02 4.70 16 36 H 0.12 5.30 4.52 -2.91 -0.01 5.29 16 37 H 0.30 13.83 8.29 -92.71 -0.77 13.06 16 38 H 0.11 4.43 8.06 -2.92 -0.02 4.40 16 Total: -1.00 -61.60 313.88 4.95 -56.66 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.98 Total: 26.11 kcal Atomic # 6 Polarization: -63.23 SS G_CDS: 3.70 Total: -59.53 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: -1.42 Total: -66.09 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 1.68 Total: 42.85 kcal Total: -61.60 4.95 -56.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241546045.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.899 kcal (2) G-P(sol) polarization free energy of solvation -61.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds