Wall clock time and date at job start Mon Mar 30 2020 00:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37675 * 119.96842 * 2 1 4 4 C 1.39791 * 119.93295 * 180.02562 * 3 2 1 5 5 C 1.47717 * 120.07651 * 179.97438 * 4 3 2 6 6 C 1.39265 * 120.34483 * 310.00126 * 5 4 3 7 7 C 1.38000 * 119.97915 * 180.02562 * 6 5 4 8 8 C 1.38985 * 120.68578 * 359.97438 * 7 6 5 9 9 C 1.36399 * 120.70342 * 0.02562 * 8 7 6 10 10 C 1.40765 * 119.99049 * 0.27134 * 9 8 7 11 11 C 1.40833 * 120.33125 * 179.72227 * 10 9 8 12 12 H 1.08003 * 119.99806 * 153.55229 * 11 10 9 13 13 C 1.40025 * 120.00259 * 333.55050 * 11 10 9 14 14 N 1.30799 * 119.99937 * 344.28396 * 13 11 10 15 15 Si 1.86799 * 120.00066 * 164.29227 * 13 11 10 16 16 H 1.48493 * 109.47563 * 89.99809 * 15 13 11 17 17 H 1.48503 * 109.47022 * 210.00049 * 15 13 11 18 18 H 1.48507 * 109.47076 * 329.99404 * 15 13 11 19 19 C 1.39795 * 119.84880 * 0.25957 * 4 3 2 20 20 C 1.37684 * 119.92880 * 359.50604 * 19 4 3 21 21 C 1.50699 * 119.96255 * 180.23573 * 20 19 4 22 22 C 1.39182 * 120.07169 * 0.46702 * 20 19 4 23 23 N 1.39324 * 119.92842 * 179.76047 * 22 20 19 24 24 H 1.08996 * 109.46993 * 89.99408 * 1 2 3 25 25 H 1.08998 * 109.47547 * 210.00061 * 1 2 3 26 26 H 1.09002 * 109.46739 * 330.00444 * 1 2 3 27 27 H 1.08007 * 120.03387 * 0.02562 * 3 2 1 28 28 H 1.08003 * 120.01537 * 359.97438 * 6 5 4 29 29 H 1.08001 * 119.66021 * 179.97438 * 7 6 5 30 30 H 1.08003 * 119.64881 * 180.02562 * 8 7 6 31 31 H 1.08003 * 119.99966 * 179.97438 * 9 8 7 32 32 H 0.97006 * 120.00142 * 179.97438 * 14 13 11 33 33 H 1.08003 * 120.03690 * 179.72422 * 19 4 3 34 34 H 1.08994 * 109.47040 * 270.22982 * 21 20 19 35 35 H 1.08997 * 109.47608 * 30.23696 * 21 20 19 36 36 H 1.09003 * 109.46824 * 150.23670 * 21 20 19 37 37 H 0.97005 * 119.99926 * 180.02562 * 23 22 20 38 38 H 0.96994 * 119.99936 * 0.03162 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1947 1.1927 0.0000 4 6 3.5926 1.1918 -0.0005 5 6 4.3337 2.4696 -0.0011 6 6 4.0180 3.4656 -0.9219 7 6 4.7156 4.6563 -0.9160 8 6 5.7351 4.8766 0.0026 9 6 6.0675 3.9204 0.9167 10 6 5.3791 2.6926 0.9326 11 6 5.7202 1.6981 1.8696 12 1 4.9816 0.9749 2.1825 13 6 7.0170 1.6468 2.3954 14 7 7.9860 2.3029 1.8112 15 14 7.3630 0.6411 3.9311 16 1 7.7329 -0.7437 3.5431 17 1 8.4826 1.2595 4.6858 18 1 6.1487 0.6083 4.7854 19 6 4.2877 -0.0211 -0.0066 20 6 3.5939 -1.2104 -0.0017 21 6 4.3424 -2.5183 -0.0028 22 6 2.2021 -1.2059 -0.0005 23 7 1.5031 -2.4111 -0.0006 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 1.6547 2.1281 0.0004 28 1 3.2281 3.3060 -1.6409 29 1 4.4668 5.4251 -1.6327 30 1 6.2699 5.8149 -0.0075 31 1 6.8619 4.1034 1.6251 32 1 8.8843 2.2677 2.1757 33 1 5.3677 -0.0253 -0.0115 34 1 4.5220 -2.8333 -1.0307 35 1 5.2957 -2.3920 0.5104 36 1 3.7508 -3.2759 0.5111 37 1 0.5331 -2.4092 -0.0002 38 1 1.9865 -3.2520 -0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241884607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:18 Heat of formation + Delta-G solvation = 25.400026 kcal Electronic energy + Delta-G solvation = -19703.267568 eV Core-core repulsion = 16894.974236 eV Total energy + Delta-G solvation = -2808.293332 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.22658 -37.39196 -34.13590 -33.67245 -33.03242 -30.66072 -29.52303 -28.21443 -26.13542 -25.98234 -25.04033 -21.65085 -20.93678 -20.09351 -19.03374 -17.22533 -16.73784 -16.39002 -15.40821 -14.77563 -13.99975 -13.87273 -13.76011 -13.13833 -13.11499 -12.83969 -12.83644 -12.57776 -12.26049 -12.14020 -11.69444 -11.50421 -11.37390 -11.16688 -11.06398 -10.94623 -10.52014 -10.42403 -10.23277 -9.99160 -9.39920 -9.30977 -9.17155 -7.85508 -7.52767 -7.34002 -6.80639 -6.48028 -4.29524 2.14250 2.20011 2.82661 3.07288 3.12672 3.15253 3.26539 3.94120 4.28962 4.56994 4.67733 5.30811 5.39658 5.58340 5.68738 5.73784 5.86717 5.98242 6.01072 6.09193 6.13447 6.25685 6.30145 6.36461 6.48170 6.65535 6.72640 6.90176 7.02315 7.09988 7.22270 7.27157 7.39151 7.58021 7.65450 7.66107 7.94119 8.04749 8.12695 8.14086 8.17216 8.32660 8.66201 8.90985 9.00798 10.18530 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.014836 B = 0.007918 C = 0.005678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.899143 B = 3535.395482 C = 4929.920978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.171 4.171 3 C -0.086 4.086 4 C -0.030 4.030 5 C -0.172 4.172 6 C -0.077 4.077 7 C -0.244 4.244 8 C -0.105 4.105 9 C -0.159 4.159 10 C 0.127 3.873 11 C -0.449 4.449 12 H 0.083 0.917 13 C 0.076 3.924 14 N -0.793 5.793 15 Si 0.902 3.098 16 H -0.269 1.269 17 H -0.277 1.277 18 H -0.260 1.260 19 C -0.052 4.052 20 C -0.169 4.169 21 C -0.099 4.099 22 C 0.193 3.807 23 N -0.885 5.885 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.112 0.888 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.280 0.720 33 H 0.127 0.873 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.390 0.610 38 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.743 -7.056 -1.556 10.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.176 4.176 3 C -0.105 4.105 4 C -0.032 4.032 5 C -0.174 4.174 6 C -0.095 4.095 7 C -0.263 4.263 8 C -0.124 4.124 9 C -0.179 4.179 10 C 0.124 3.876 11 C -0.478 4.478 12 H 0.101 0.899 13 C -0.142 4.142 14 N -0.418 5.418 15 Si 0.726 3.274 16 H -0.194 1.194 17 H -0.202 1.202 18 H -0.184 1.184 19 C -0.070 4.070 20 C -0.173 4.173 21 C -0.156 4.156 22 C 0.090 3.910 23 N -0.428 5.428 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.130 0.870 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.135 0.865 32 H 0.091 0.909 33 H 0.145 0.855 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.218 0.782 38 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -7.445 -6.972 -1.532 10.314 hybrid contribution 0.169 -0.658 0.680 0.961 sum -7.276 -7.630 -0.852 10.577 Atomic orbital electron populations 1.20492 0.92408 1.01487 1.00957 1.19076 0.94776 0.91885 1.11849 1.20894 0.93635 0.96050 0.99923 1.18563 0.91568 0.92924 1.00144 1.18602 1.04215 0.93492 1.01061 1.20575 0.98095 0.93489 0.97366 1.20258 1.03100 0.98366 1.04566 1.20456 0.97213 0.97897 0.96787 1.21039 1.02802 0.93190 1.00833 1.17561 0.88834 0.91748 0.89450 1.19542 0.95927 1.12360 1.19970 0.89923 1.25917 0.96016 0.95079 0.97155 1.69813 1.01496 1.34623 1.35880 0.86404 0.78973 0.80132 0.81880 1.19425 1.20154 1.18413 1.21090 1.00077 0.90266 0.95608 1.19219 0.91280 0.95646 1.11185 1.20522 0.99804 0.94228 1.01050 1.17299 0.90487 0.85694 0.97478 1.42396 1.08272 1.05231 1.86902 0.92513 0.93004 0.92050 0.87016 0.89375 0.89652 0.89694 0.86507 0.90900 0.85475 0.92440 0.91620 0.93069 0.78178 0.78066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 9.56 36.01 0.34 -0.92 16 2 C -0.17 -2.92 5.89 -104.47 -0.62 -3.54 16 3 C -0.09 -1.69 9.16 -39.21 -0.36 -2.05 16 4 C -0.03 -0.67 4.93 -104.86 -0.52 -1.19 16 5 C -0.17 -4.21 5.52 -104.23 -0.58 -4.78 16 6 C -0.08 -1.77 9.51 -39.29 -0.37 -2.15 16 7 C -0.24 -5.56 10.03 -39.39 -0.40 -5.96 16 8 C -0.10 -2.50 9.96 -39.97 -0.40 -2.90 16 9 C -0.16 -4.14 8.62 -39.29 -0.34 -4.48 16 10 C 0.13 3.33 5.56 -106.55 -0.59 2.74 16 11 C -0.45 -11.62 7.13 -37.93 -0.27 -11.89 16 12 H 0.08 2.14 6.61 -52.48 -0.35 1.79 16 13 C 0.08 1.88 5.17 -17.32 -0.09 1.79 16 14 N -0.79 -20.16 10.96 55.55 0.61 -19.55 16 15 Si 0.90 18.69 29.59 -169.99 -5.03 13.66 16 16 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 17 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 18 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 19 C -0.05 -1.10 7.63 -39.20 -0.30 -1.40 16 20 C -0.17 -3.05 5.89 -104.47 -0.62 -3.67 16 21 C -0.10 -1.45 9.56 36.01 0.34 -1.11 16 22 C 0.19 3.20 6.72 -83.75 -0.56 2.64 16 23 N -0.89 -10.98 8.87 32.45 0.29 -10.69 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.58 6.54 -51.93 -0.34 0.24 16 26 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 27 H 0.11 2.08 8.04 -52.48 -0.42 1.66 16 28 H 0.09 1.83 8.04 -52.48 -0.42 1.41 16 29 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.08 1.81 8.06 -52.48 -0.42 1.39 16 31 H 0.12 3.11 6.22 -52.48 -0.33 2.79 16 32 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 33 H 0.13 2.88 7.30 -52.48 -0.38 2.50 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 36 H 0.05 0.63 6.54 -51.93 -0.34 0.29 16 37 H 0.39 4.05 6.80 -40.82 -0.28 3.77 16 38 H 0.39 4.18 6.80 -40.82 -0.28 3.91 16 LS Contribution 311.32 15.07 4.69 4.69 Total: -1.00 -27.76 311.32 -9.55 -37.31 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -4.80 Total: 13.43 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: -5.31 Total: -38.85 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.90 Total: -30.24 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.76 -9.55 -37.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241884607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.710 kcal (2) G-P(sol) polarization free energy of solvation -27.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds