Wall clock time and date at job start Mon Mar 30 2020 00:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38419 * 119.83561 * 2 1 4 4 C 1.38012 * 120.27765 * 179.75972 * 3 2 1 5 5 C 1.39282 * 119.94830 * 0.47514 * 4 3 2 6 6 C 1.48302 * 120.15671 * 179.78630 * 5 4 3 7 7 C 1.39407 * 120.12286 * 129.72186 * 6 5 4 8 8 C 1.37989 * 119.86983 * 180.02562 * 7 6 5 9 9 C 1.38348 * 120.12516 * 0.26031 * 8 7 6 10 10 C 1.38301 * 120.25240 * 359.47897 * 9 8 7 11 11 C 1.50704 * 119.93695 * 180.25993 * 10 9 8 12 12 C 1.50701 * 109.47257 * 270.25767 * 11 10 9 13 13 H 1.07998 * 120.00078 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99999 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00308 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99779 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46910 * 60.00596 * 16 14 12 18 18 H 1.48498 * 109.46905 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47584 * 300.00533 * 16 14 12 20 20 C 1.38026 * 120.12949 * 0.52153 * 10 9 8 21 21 C 1.39965 * 119.68125 * 359.50818 * 5 4 3 22 22 N 1.39466 * 120.14053 * 180.27695 * 21 5 4 23 23 C 1.38125 * 119.83585 * 179.97438 * 2 1 3 24 24 H 1.08997 * 109.46998 * 270.02084 * 1 2 3 25 25 H 1.09004 * 109.47197 * 30.02316 * 1 2 3 26 26 H 1.09006 * 109.46882 * 150.02101 * 1 2 3 27 27 H 1.07998 * 119.85969 * 0.02826 * 3 2 1 28 28 H 1.07997 * 120.02787 * 180.25253 * 4 3 2 29 29 H 1.07999 * 120.06496 * 0.04223 * 7 6 5 30 30 H 1.08002 * 119.93231 * 179.97438 * 8 7 6 31 31 H 1.08003 * 119.87343 * 179.72305 * 9 8 7 32 32 H 1.09000 * 109.47140 * 30.25482 * 11 10 9 33 33 H 1.08997 * 109.47122 * 150.25488 * 11 10 9 34 34 H 0.97001 * 120.00259 * 179.97438 * 15 14 12 35 35 H 1.08003 * 120.07039 * 179.72090 * 20 10 9 36 36 H 0.97005 * 120.00355 * 0.02562 * 22 21 5 37 37 H 0.97006 * 119.99933 * 179.97438 * 22 21 5 38 38 H 1.07997 * 119.98532 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2007 0.0000 4 6 3.5757 1.2114 0.0050 5 6 4.2804 0.0100 0.0001 6 6 5.7634 0.0160 0.0006 7 6 6.4658 -0.7557 0.9250 8 6 7.8457 -0.7457 0.9212 9 6 8.5319 0.0323 0.0059 10 6 7.8403 0.7957 -0.9169 11 6 8.5950 1.6361 -1.9146 12 6 8.8412 3.0049 -1.3342 13 1 8.4863 3.2427 -0.3423 14 6 9.5196 3.9537 -2.0694 15 7 9.9514 3.6643 -3.2775 16 14 9.8241 5.6506 -1.3502 17 1 10.6222 5.5242 -0.1044 18 1 10.5679 6.4786 -2.3332 19 1 8.5239 6.2981 -1.0416 20 6 6.4600 0.7936 -0.9225 21 6 3.5821 -1.2031 0.0005 22 7 4.2780 -2.4117 0.0014 23 6 2.1942 -1.1982 0.0005 24 1 -0.3633 0.0004 1.0276 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6507 2.1331 0.0005 28 1 4.1089 2.1505 0.0091 29 1 5.9311 -1.3603 1.6425 30 1 8.3909 -1.3428 1.6371 31 1 9.6119 0.0405 0.0094 32 1 9.5493 1.1609 -2.1418 33 1 8.0087 1.7291 -2.8287 34 1 10.4284 4.3319 -3.7949 35 1 5.9209 1.3936 -1.6407 36 1 5.2481 -2.4129 0.0021 37 1 3.7920 -3.2512 0.0020 38 1 1.6513 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244391381.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:00 Heat of formation + Delta-G solvation = 25.863974 kcal Electronic energy + Delta-G solvation = -18917.421340 eV Core-core repulsion = 16109.148126 eV Total energy + Delta-G solvation = -2808.273214 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.79721 -38.13718 -34.91822 -33.49161 -32.69454 -31.15958 -29.98648 -28.70855 -27.09430 -26.19222 -23.34136 -22.53051 -21.78440 -20.78082 -19.76557 -16.89543 -16.45923 -16.27850 -15.99498 -15.34384 -14.57629 -14.53826 -14.17811 -13.84675 -13.69385 -13.53304 -12.80066 -12.69197 -12.40837 -12.37816 -12.18995 -11.70515 -11.50655 -11.27589 -11.07271 -10.97795 -10.70262 -10.51575 -10.34539 -10.22172 -9.55549 -9.46992 -8.78230 -8.42223 -8.09054 -7.84578 -7.20633 -6.04467 -4.08438 1.30236 1.77509 2.07525 2.16951 3.32265 3.36263 3.39642 3.97168 3.98156 4.37947 4.54170 4.87981 5.00418 5.09733 5.30119 5.35034 5.48028 5.52142 5.54014 5.56576 5.68210 5.79715 5.91406 6.01497 6.11728 6.22953 6.24142 6.34248 6.61894 6.67133 6.75181 6.83051 7.01200 7.08233 7.17650 7.21794 7.49467 7.59692 7.70565 7.84266 7.85921 7.91237 8.31265 8.96535 9.55437 11.05460 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.004539 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.563155 B = 6167.640771 C = 7038.139494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.046 4.046 3 C -0.179 4.179 4 C -0.055 4.055 5 C -0.118 4.118 6 C -0.043 4.043 7 C -0.152 4.152 8 C -0.120 4.120 9 C -0.125 4.125 10 C -0.029 4.029 11 C 0.047 3.953 12 C -0.512 4.512 13 H 0.057 0.943 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.895 3.105 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.110 4.110 21 C 0.231 3.769 22 N -0.877 5.877 23 C -0.205 4.205 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.117 0.883 28 H 0.125 0.875 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.263 0.737 35 H 0.118 0.882 36 H 0.403 0.597 37 H 0.393 0.607 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.396 -10.755 7.115 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.047 4.047 3 C -0.199 4.199 4 C -0.074 4.074 5 C -0.122 4.122 6 C -0.043 4.043 7 C -0.170 4.170 8 C -0.138 4.138 9 C -0.143 4.143 10 C -0.029 4.029 11 C 0.010 3.990 12 C -0.551 4.551 13 H 0.075 0.925 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.128 4.128 21 C 0.125 3.875 22 N -0.417 5.417 23 C -0.227 4.227 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.135 0.865 28 H 0.143 0.857 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.135 0.865 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.136 0.864 36 H 0.235 0.765 37 H 0.220 0.780 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.305 -10.653 6.953 19.143 hybrid contribution 0.476 0.674 0.359 0.900 sum -13.828 -9.979 7.313 18.554 Atomic orbital electron populations 1.20782 0.91679 1.02470 1.02006 1.19611 0.95389 0.92679 0.96994 1.20693 0.93901 0.97149 1.08190 1.21083 0.93729 0.97069 0.95489 1.18351 0.92015 0.91753 1.10101 1.18591 0.90769 0.98315 0.96658 1.20906 0.94039 1.02178 0.99875 1.20956 0.93956 0.99873 0.99056 1.21144 0.99954 0.97309 0.95886 1.20651 0.93430 0.93006 0.95835 1.18366 0.94861 0.93315 0.92413 1.21014 1.36170 0.96167 1.01713 0.92506 1.25002 0.95568 0.98812 0.94860 1.69946 1.38258 1.34855 1.10255 0.86599 0.78458 0.83838 0.78820 1.20160 1.21216 1.20130 1.21163 0.94008 0.98876 0.98772 1.17690 0.90845 0.86056 0.92865 1.42705 1.09732 1.04686 1.84574 1.20280 0.91622 0.97835 1.13003 0.91387 0.91593 0.91892 0.86503 0.85681 0.87098 0.86997 0.86456 0.95302 0.95317 0.92773 0.86352 0.76544 0.77977 0.86596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.00 36.01 0.36 -0.64 16 2 C -0.05 -0.56 5.88 -104.60 -0.62 -1.17 16 3 C -0.18 -2.37 9.68 -39.60 -0.38 -2.76 16 4 C -0.06 -0.84 9.51 -39.28 -0.37 -1.21 16 5 C -0.12 -1.87 5.49 -104.72 -0.57 -2.44 16 6 C -0.04 -0.75 5.08 -104.90 -0.53 -1.28 16 7 C -0.15 -2.41 7.71 -39.24 -0.30 -2.71 16 8 C -0.12 -1.96 10.03 -39.63 -0.40 -2.36 16 9 C -0.12 -2.42 9.69 -39.52 -0.38 -2.80 16 10 C -0.03 -0.64 5.06 -104.67 -0.53 -1.17 16 11 C 0.05 1.22 5.10 -29.03 -0.15 1.07 16 12 C -0.51 -14.40 9.09 -34.44 -0.31 -14.71 16 13 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 16 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C -0.11 -2.21 9.17 -39.24 -0.36 -2.57 16 21 C 0.23 3.18 6.68 -83.54 -0.56 2.62 16 22 N -0.88 -9.95 8.63 32.55 0.28 -9.67 16 23 C -0.20 -2.52 9.53 -39.42 -0.38 -2.90 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 26 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 27 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 28 H 0.13 1.91 8.04 -52.49 -0.42 1.49 16 29 H 0.11 1.54 7.48 -52.49 -0.39 1.15 16 30 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.12 2.21 8.06 -52.48 -0.42 1.79 16 32 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 33 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.12 2.40 8.05 -52.48 -0.42 1.98 16 36 H 0.40 4.79 5.97 -40.82 -0.24 4.55 16 37 H 0.39 3.34 8.84 -40.82 -0.36 2.98 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 323.08 15.07 4.87 4.87 Total: -1.00 -30.38 323.08 -9.90 -40.27 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.18 Total: 7.12 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: -5.58 Total: -33.46 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 1.02 Total: -35.40 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.38 -9.90 -40.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244391381.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.138 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds