Wall clock time and date at job start Mon Mar 30 2020 01:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47303 * 2 1 4 4 O 1.33498 * 126.82912 * 269.97315 * 3 2 1 5 5 N 1.20656 * 113.15566 * 180.02562 * 4 3 2 6 6 C 1.30018 * 112.30289 * 359.73191 * 5 4 3 7 7 C 1.37361 * 126.83164 * 89.99547 * 3 2 1 8 8 C 1.47406 * 128.56244 * 359.94507 * 7 3 2 9 9 O 1.21605 * 119.99753 * 359.72539 * 8 7 3 10 10 N 1.34777 * 119.99965 * 179.97438 * 8 7 3 11 11 C 1.46496 * 119.99875 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47037 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.47511 * 295.00501 * 12 11 10 14 14 C 1.52994 * 109.47323 * 174.99998 * 12 11 10 15 15 N 1.46507 * 109.46724 * 55.00335 * 12 11 10 16 16 C 1.36939 * 119.99482 * 204.99601 * 15 12 11 17 17 H 1.07994 * 120.00727 * 0.02562 * 16 15 12 18 18 C 1.38818 * 119.99332 * 179.97438 * 16 15 12 19 19 N 1.31616 * 120.00114 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99578 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46991 * 90.00263 * 20 18 16 22 22 H 1.48501 * 109.47151 * 209.99971 * 20 18 16 23 23 H 1.48497 * 109.47313 * 330.00311 * 20 18 16 24 24 H 1.08994 * 109.47133 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47278 * 300.00388 * 1 2 3 26 26 H 1.09006 * 109.46972 * 60.00293 * 1 2 3 27 27 H 1.09002 * 109.47278 * 239.99612 * 2 1 3 28 28 H 1.09003 * 109.46328 * 120.00049 * 2 1 3 29 29 H 1.08003 * 127.33720 * 180.29720 * 6 5 4 30 30 H 0.97004 * 119.99528 * 0.02562 * 10 8 7 31 31 H 1.08996 * 109.47565 * 300.00629 * 11 10 8 32 32 H 1.09000 * 109.46876 * 60.00429 * 11 10 8 33 33 H 1.08992 * 109.47532 * 180.02562 * 14 12 11 34 34 H 1.09000 * 109.47237 * 300.00670 * 14 12 11 35 35 H 1.09011 * 109.47099 * 60.00062 * 14 12 11 36 36 H 0.96991 * 120.00134 * 25.00189 * 15 12 11 37 37 H 0.97008 * 119.99512 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2996 2.1750 -1.0686 5 7 2.6908 3.2802 -0.7833 6 6 2.7503 3.4661 0.5021 7 6 2.3068 2.1971 1.0994 8 6 2.1817 1.8471 2.5259 9 8 1.7851 0.7438 2.8486 10 7 2.5022 2.7515 3.4723 11 6 2.3774 2.4038 4.8899 12 6 2.8004 3.5984 5.7472 13 1 3.8602 3.8000 5.5919 14 6 2.5526 3.2803 7.2230 15 7 2.0179 4.7762 5.3635 16 6 2.5185 6.0318 5.5827 17 1 3.4901 6.1539 6.0381 18 6 1.7774 7.1477 5.2187 19 7 0.5935 6.9988 4.6633 20 14 2.4605 8.8605 5.5171 21 1 3.2378 9.2972 4.3295 22 1 1.3399 9.8066 5.7505 23 1 3.3468 8.8393 6.7084 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 3.0609 4.3610 1.0209 30 1 2.8148 3.6329 3.2147 31 1 1.3415 2.1468 5.1112 32 1 3.0188 1.5511 5.1126 33 1 2.8534 4.1314 7.8337 34 1 1.4927 3.0787 7.3783 35 1 3.1347 2.4040 7.5085 36 1 1.1454 4.6665 4.9543 37 1 0.0755 7.7787 4.4092 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266975503.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:25 Heat of formation + Delta-G solvation = 22.173959 kcal Electronic energy + Delta-G solvation = -20306.248122 eV Core-core repulsion = 17086.965634 eV Total energy + Delta-G solvation = -3219.282488 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.86619 -39.32016 -36.42090 -34.71214 -33.85355 -33.31807 -31.85997 -30.30921 -28.78734 -26.46795 -24.31986 -24.03361 -23.58619 -21.39342 -20.34394 -19.85516 -17.90499 -17.64962 -17.30906 -16.32982 -15.72680 -15.23654 -14.80405 -14.55318 -14.36997 -13.83198 -13.65073 -13.51954 -13.02350 -12.68146 -12.31822 -12.16850 -12.03814 -11.89474 -11.60053 -11.41109 -10.97645 -10.91395 -10.80857 -10.40344 -10.33709 -10.07791 -9.85764 -9.76935 -9.44509 -9.04030 -8.69920 -7.10109 -5.86623 -3.17343 1.11832 1.87279 2.81864 3.36545 3.38752 3.43055 3.44544 3.50100 4.34283 4.35233 4.50274 4.65006 4.93705 5.07634 5.19250 5.31436 5.42738 5.44040 5.52256 5.62651 5.71291 5.87101 5.88562 5.95044 6.03414 6.10322 6.13392 6.26369 6.50856 6.68582 6.75498 6.98380 7.61247 7.81211 8.20793 8.30578 8.42635 9.42766 9.97034 10.32640 11.35110 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.019424 B = 0.005105 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.144449 B = 5483.442532 C = 6433.559562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 C 0.042 3.958 4 O 0.088 5.912 5 N -0.358 5.358 6 C 0.030 3.970 7 C -0.256 4.256 8 C 0.594 3.406 9 O -0.547 6.547 10 N -0.701 5.701 11 C 0.116 3.884 12 C 0.158 3.842 13 H 0.054 0.946 14 C -0.162 4.162 15 N -0.724 5.724 16 C -0.245 4.245 17 H 0.071 0.929 18 C -0.009 4.009 19 N -0.929 5.929 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.113 0.887 29 H 0.204 0.796 30 H 0.411 0.589 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.039 0.961 36 H 0.385 0.615 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.187 -12.879 -7.188 15.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 C -0.022 4.022 4 O 0.029 5.971 5 N -0.064 5.064 6 C -0.153 4.153 7 C -0.263 4.263 8 C 0.380 3.620 9 O -0.427 6.427 10 N -0.352 5.352 11 C -0.008 4.008 12 C 0.048 3.952 13 H 0.072 0.928 14 C -0.223 4.223 15 N -0.367 5.367 16 C -0.376 4.376 17 H 0.089 0.911 18 C -0.206 4.206 19 N -0.577 5.577 20 Si 0.736 3.264 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.131 0.869 29 H 0.221 0.779 30 H 0.247 0.753 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.219 0.781 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.272 -12.736 -7.974 15.378 hybrid contribution 0.079 1.469 0.811 1.680 sum 3.351 -11.267 -7.162 13.765 Atomic orbital electron populations 1.21714 0.92968 1.02843 1.02805 1.20343 0.97184 0.85574 1.05285 1.24863 0.95904 0.96153 0.85285 1.84557 1.61423 1.17710 1.33390 1.73646 1.16770 0.98328 1.17669 1.26530 1.00037 0.99344 0.89387 1.22167 1.13398 0.95142 0.95578 1.16779 0.77650 0.84489 0.83097 1.90740 1.47700 1.21945 1.82361 1.45781 1.66133 1.16974 1.06299 1.21741 1.01736 0.98080 0.79244 1.20523 0.96091 0.86635 0.91918 0.92802 1.22356 1.00997 1.00172 0.98760 1.42482 1.20479 1.00292 1.73421 1.19218 1.01056 0.83206 1.34106 0.91078 1.24744 0.96603 0.97836 1.01378 1.69664 1.11965 1.29095 1.46989 0.86224 0.77708 0.84613 0.77808 1.21688 1.21791 1.20750 0.91115 0.91585 0.92413 0.89476 0.86856 0.77922 0.75264 0.91548 0.91548 0.92281 0.93169 0.94149 0.78074 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.89 37.16 0.37 -1.05 16 2 C -0.05 -0.47 6.05 -27.88 -0.17 -0.63 16 3 C 0.04 0.55 6.80 -34.63 -0.24 0.32 16 4 O 0.09 1.21 11.06 18.64 0.21 1.42 16 5 N -0.36 -5.37 12.01 31.81 0.38 -4.98 16 6 C 0.03 0.43 11.95 -14.73 -0.18 0.25 16 7 C -0.26 -3.78 6.47 -102.89 -0.67 -4.45 16 8 C 0.59 9.71 7.81 -12.53 -0.10 9.61 16 9 O -0.55 -9.76 15.24 5.27 0.08 -9.68 16 10 N -0.70 -11.39 5.38 -61.39 -0.33 -11.72 16 11 C 0.12 1.89 5.23 -4.04 -0.02 1.87 16 12 C 0.16 2.86 3.05 -67.93 -0.21 2.65 16 13 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 14 C -0.16 -2.71 9.49 37.15 0.35 -2.35 16 15 N -0.72 -16.48 4.56 -53.42 -0.24 -16.73 16 16 C -0.24 -6.28 9.93 -15.06 -0.15 -6.43 16 17 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 19 N -0.93 -26.76 13.06 55.49 0.72 -26.04 16 20 Si 0.91 21.45 29.55 -169.99 -5.02 16.42 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.11 1.26 6.79 -51.93 -0.35 0.91 16 29 H 0.20 2.61 7.88 -52.48 -0.41 2.20 16 30 H 0.41 6.76 7.50 -40.82 -0.31 6.45 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.04 0.56 8.14 -51.92 -0.42 0.13 16 36 H 0.39 9.57 7.80 -40.82 -0.32 9.25 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 321.83 15.07 4.85 4.85 Total: -1.00 -29.72 321.83 -5.61 -35.33 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -5.16 Total: 11.69 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -1.10 Total: -0.56 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.53 Total: -59.47 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.29 Total: -8.27 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.72 -5.61 -35.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266975503.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.506 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds