Wall clock time and date at job start Mon Mar 30 2020 01:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33691 * 126.27399 * 2 1 4 4 C 1.30613 * 108.99940 * 179.97438 * 3 2 1 5 5 O 1.33665 * 109.15211 * 359.97438 * 4 3 2 6 6 C 1.35350 * 107.68484 * 359.75693 * 5 4 3 7 7 C 1.46717 * 126.64646 * 180.26124 * 6 5 4 8 8 O 1.21688 * 120.00231 * 180.14570 * 7 6 5 9 9 N 1.34779 * 120.00107 * 0.14483 * 7 6 5 10 10 C 1.46496 * 120.00263 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.47283 * 325.00225 * 10 9 7 12 12 C 1.52997 * 109.47011 * 85.00178 * 10 9 7 13 13 C 1.53001 * 109.47351 * 205.00208 * 10 9 7 14 14 H 1.09002 * 109.46956 * 64.99853 * 13 10 9 15 15 C 1.53000 * 109.46957 * 304.99959 * 13 10 9 16 16 N 1.46496 * 109.47070 * 184.99953 * 13 10 9 17 17 C 1.36939 * 119.99926 * 204.99623 * 16 13 10 18 18 H 1.07999 * 119.99770 * 0.02562 * 17 16 13 19 19 C 1.38807 * 119.99939 * 180.02562 * 17 16 13 20 20 N 1.31622 * 120.00393 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00101 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46701 * 89.99910 * 21 19 17 23 23 H 1.48493 * 109.47091 * 209.99834 * 21 19 17 24 24 H 1.48499 * 109.46849 * 330.00363 * 21 19 17 25 25 H 1.09001 * 109.46953 * 90.02730 * 1 2 3 26 26 H 1.09000 * 109.47318 * 210.02328 * 1 2 3 27 27 H 1.09000 * 109.47161 * 330.02958 * 1 2 3 28 28 H 1.07996 * 125.42400 * 180.02562 * 4 3 2 29 29 H 0.97000 * 119.99868 * 0.02562 * 9 7 6 30 30 H 1.08998 * 109.47520 * 180.02562 * 12 10 9 31 31 H 1.09000 * 109.47513 * 299.99943 * 12 10 9 32 32 H 1.08998 * 109.47059 * 59.99909 * 12 10 9 33 33 H 1.08999 * 109.47326 * 300.00266 * 15 13 10 34 34 H 1.09008 * 109.47109 * 60.00426 * 15 13 10 35 35 H 1.09000 * 109.46989 * 179.97438 * 15 13 10 36 36 H 0.97002 * 120.00031 * 25.00919 * 16 13 10 37 37 H 0.96999 * 120.00573 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5453 0.6900 0.0006 5 8 3.5891 -0.6460 0.0015 6 6 2.3137 -1.0992 0.0070 7 6 1.8827 -2.5016 0.0152 8 8 0.6966 -2.7736 0.0169 9 7 2.8004 -3.4886 0.0210 10 6 2.3701 -4.8889 0.0298 11 1 1.4589 -4.9854 0.6202 12 6 2.0996 -5.3484 -1.4043 13 6 3.4702 -5.7567 0.6444 14 1 3.6012 -5.4887 1.6928 15 6 4.7819 -5.5264 -0.1087 16 7 3.0914 -7.1684 0.5449 17 6 3.6061 -8.0793 1.4283 18 1 4.2909 -7.7569 2.1987 19 6 3.2475 -9.4169 1.3337 20 7 2.4133 -9.8099 0.3946 21 14 3.9491 -10.6595 2.5393 22 1 3.0561 -10.7606 3.7216 23 1 4.0498 -11.9863 1.8802 24 1 5.2988 -10.2192 2.9747 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5134 28 1 4.4043 1.3444 0.0011 29 1 3.7459 -3.2718 0.0200 30 1 1.7790 -6.3901 -1.3978 31 1 1.3159 -4.7302 -1.8422 32 1 3.0108 -5.2519 -1.9947 33 1 4.6509 -5.7943 -1.1571 34 1 5.0638 -4.4760 -0.0346 35 1 5.5657 -6.1442 0.3294 36 1 2.4761 -7.4578 -0.1469 37 1 2.1624 -10.7446 0.3286 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282112337.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:37 Heat of formation + Delta-G solvation = -28.173686 kcal Electronic energy + Delta-G solvation = -20302.065834 eV Core-core repulsion = 17080.600108 eV Total energy + Delta-G solvation = -3221.465726 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.46977 -40.95050 -38.51717 -36.45827 -35.58268 -33.66638 -32.66984 -31.09757 -29.83641 -28.78774 -26.19219 -25.53472 -24.34777 -22.81183 -21.73562 -20.73539 -19.63788 -19.17481 -17.95514 -17.52916 -17.02703 -16.64091 -16.06457 -15.96708 -15.56064 -15.35527 -15.17527 -14.62601 -14.27375 -14.03469 -13.96286 -13.52745 -13.24575 -13.09469 -13.01249 -12.80146 -12.66592 -12.16786 -12.13141 -12.06269 -11.95729 -11.68394 -11.63545 -11.24418 -10.95860 -10.37400 -9.93088 -9.03744 -7.93466 -5.22507 -0.24661 1.39246 1.40290 1.49270 1.50461 1.58537 1.94929 2.09520 2.58515 3.14832 3.40409 3.65099 3.67480 3.87013 3.95907 4.04997 4.29850 4.39909 4.44659 4.57419 4.65582 4.68107 4.80459 4.84559 4.92819 4.97229 5.03255 5.18627 5.21747 5.29993 5.41113 5.53482 5.60616 6.25981 6.28532 6.55324 6.94735 7.35537 8.08686 8.32361 9.29965 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038052 B = 0.003821 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.656960 B = 7325.977170 C = 7610.376458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.074 3.926 3 N -0.525 5.525 4 C 0.231 3.769 5 O -0.192 6.192 6 C -0.136 4.136 7 C 0.605 3.395 8 O -0.546 6.546 9 N -0.695 5.695 10 C 0.149 3.851 11 H 0.067 0.933 12 C -0.151 4.151 13 C 0.165 3.835 14 H 0.048 0.952 15 C -0.159 4.159 16 N -0.733 5.733 17 C -0.240 4.240 18 H 0.077 0.923 19 C -0.073 4.073 20 N -0.969 5.969 21 Si 0.971 3.029 22 H -0.290 1.290 23 H -0.297 1.297 24 H -0.268 1.268 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.311 0.689 29 H 0.414 0.586 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.377 0.623 37 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.262 22.071 -2.304 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.049 4.049 3 N -0.254 5.254 4 C 0.006 3.994 5 O -0.078 6.078 6 C -0.191 4.191 7 C 0.392 3.608 8 O -0.425 6.425 9 N -0.347 5.347 10 C 0.044 3.956 11 H 0.085 0.915 12 C -0.209 4.209 13 C 0.056 3.944 14 H 0.066 0.934 15 C -0.219 4.219 16 N -0.375 5.375 17 C -0.372 4.372 18 H 0.095 0.905 19 C -0.266 4.266 20 N -0.619 5.619 21 Si 0.800 3.200 22 H -0.217 1.217 23 H -0.224 1.224 24 H -0.193 1.193 25 H 0.107 0.893 26 H 0.100 0.900 27 H 0.109 0.891 28 H 0.326 0.674 29 H 0.253 0.747 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.212 0.788 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.406 22.360 -2.153 22.720 hybrid contribution 0.638 -1.676 0.305 1.819 sum 4.044 20.684 -1.848 21.156 Atomic orbital electron populations 1.20409 0.84966 1.04336 1.04147 1.22326 0.99075 0.86705 0.96817 1.70394 1.02556 1.31235 1.21178 1.29640 0.98247 0.78910 0.92560 1.84503 1.28443 1.25508 1.69354 1.22581 0.82442 0.95471 1.18614 1.16525 0.85588 0.82104 0.76616 1.90850 1.16992 1.82504 1.52200 1.45934 1.10260 1.05302 1.73226 1.21026 0.97911 0.79171 0.97479 0.91470 1.22047 1.02128 1.01092 0.95674 1.20517 0.92509 0.83936 0.97406 0.93390 1.22370 0.98035 1.00667 1.00793 1.42626 1.55223 1.02333 1.37339 1.19609 1.20573 0.88881 1.08103 0.90460 1.25518 1.00982 0.99121 1.00932 1.69809 1.39529 1.15819 1.36754 0.85176 0.78275 0.78383 0.78131 1.21722 1.22376 1.19286 0.89328 0.90018 0.89119 0.67425 0.74746 0.92440 0.92605 0.90963 0.92810 0.90920 0.93653 0.78838 0.94040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.74 9.88 71.24 0.70 -1.04 16 2 C 0.07 1.75 7.16 41.83 0.30 2.05 16 3 N -0.52 -10.53 11.26 -303.13 -3.41 -13.94 16 4 C 0.23 2.92 13.21 130.42 1.72 4.64 16 5 O -0.19 -3.49 10.57 -7.17 -0.08 -3.57 16 6 C -0.14 -3.33 7.18 24.04 0.17 -3.16 16 7 C 0.61 17.71 7.75 86.46 0.67 18.38 16 8 O -0.55 -19.14 14.45 -4.31 -0.06 -19.20 16 9 N -0.69 -18.93 4.98 -446.47 -2.23 -21.15 16 10 C 0.15 5.02 2.62 44.99 0.12 5.13 16 11 H 0.07 2.62 7.58 -2.39 -0.02 2.60 16 12 C -0.15 -4.98 9.00 71.98 0.65 -4.33 16 13 C 0.17 6.16 2.93 44.99 0.13 6.29 16 14 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 15 C -0.16 -4.95 9.01 71.98 0.65 -4.30 16 16 N -0.73 -35.60 5.03 -322.95 -1.63 -37.23 16 17 C -0.24 -12.96 9.93 84.03 0.83 -12.12 16 18 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 19 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 20 N -0.97 -58.56 13.06 21.65 0.28 -58.28 16 21 Si 0.97 45.54 29.55 68.60 2.03 47.56 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 23 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.08 2.02 6.45 -2.39 -0.02 2.00 16 27 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.31 -0.25 8.06 -2.91 -0.02 -0.27 16 29 H 0.41 9.22 6.37 -92.71 -0.59 8.63 16 30 H 0.06 2.17 6.29 -2.39 -0.02 2.15 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.07 2.14 6.56 -2.39 -0.02 2.12 16 33 H 0.05 1.69 6.56 -2.39 -0.02 1.68 16 34 H 0.07 1.67 6.29 -2.38 -0.01 1.65 16 35 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.38 19.66 5.77 -92.71 -0.54 19.12 16 37 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -70.44 311.12 1.31 -69.13 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: -0.01 Total: 28.79 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 6.42 Total: 7.88 kcal Atomic # 7 Polarization: -123.62 SS G_CDS: -6.98 Total: -130.60 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.14 Total: -22.77 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -70.44 1.31 -69.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282112337.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.960 kcal (2) G-P(sol) polarization free energy of solvation -70.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds