Wall clock time and date at job start Mon Mar 30 2020 01:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35321 * 128.04299 * 2 1 4 4 O 1.34013 * 106.67255 * 180.22255 * 3 2 1 5 5 N 1.20907 * 111.84132 * 359.76592 * 4 3 2 6 6 C 1.30978 * 111.44444 * 359.97438 * 5 4 3 7 7 C 1.48335 * 126.94179 * 179.97438 * 6 5 4 8 8 O 1.21493 * 120.00109 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99563 * 0.02621 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72347 * 9 7 6 11 11 H 1.08999 * 109.47228 * 325.27715 * 10 9 7 12 12 C 1.52999 * 109.47341 * 85.27876 * 10 9 7 13 13 C 1.53001 * 109.47193 * 205.27836 * 10 9 7 14 14 H 1.08999 * 109.46935 * 300.00059 * 13 10 9 15 15 C 1.53005 * 109.47302 * 60.00110 * 13 10 9 16 16 N 1.46499 * 109.47193 * 179.97438 * 13 10 9 17 17 C 1.36945 * 119.99961 * 154.99961 * 16 13 10 18 18 H 1.08001 * 119.99734 * 0.02562 * 17 16 13 19 19 C 1.38809 * 119.99702 * 179.97438 * 17 16 13 20 20 N 1.31614 * 120.00534 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99650 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47174 * 90.00126 * 21 19 17 23 23 H 1.48501 * 109.47062 * 210.00077 * 21 19 17 24 24 H 1.48504 * 109.46913 * 329.99876 * 21 19 17 25 25 H 1.09000 * 109.47299 * 270.15250 * 1 2 3 26 26 H 1.09000 * 109.46831 * 30.15160 * 1 2 3 27 27 H 1.08989 * 109.47053 * 150.15182 * 1 2 3 28 28 H 1.08005 * 126.66354 * 359.96691 * 3 2 1 29 29 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 30 30 H 1.08999 * 109.47091 * 59.99755 * 12 10 9 31 31 H 1.08996 * 109.47098 * 180.02562 * 12 10 9 32 32 H 1.09001 * 109.46823 * 300.00095 * 12 10 9 33 33 H 1.08999 * 109.47167 * 60.00092 * 15 13 10 34 34 H 1.08994 * 109.47455 * 180.02562 * 15 13 10 35 35 H 1.09005 * 109.46645 * 300.00223 * 15 13 10 36 36 H 0.97000 * 120.00386 * 334.99776 * 16 13 10 37 37 H 0.96996 * 120.00458 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.0657 0.0000 4 8 3.5889 0.5774 -0.0050 5 7 3.5988 -0.6316 -0.0033 6 6 2.3837 -1.1205 0.0034 7 6 1.9992 -2.5531 0.0069 8 8 0.8255 -2.8671 0.0128 9 7 2.9518 -3.5065 0.0034 10 6 2.5721 -4.9214 0.0129 11 1 1.6669 -5.0507 0.6062 12 6 2.3135 -5.3897 -1.4205 13 6 3.7046 -5.7493 0.6235 14 1 4.6098 -5.6201 0.0301 15 6 3.9632 -5.2811 2.0570 16 7 3.3246 -7.1642 0.6335 17 6 4.2924 -8.1331 0.6359 18 1 5.3358 -7.8541 0.6307 19 6 3.9323 -9.4736 0.6459 20 7 2.6609 -9.8135 0.6537 21 14 5.2525 -10.7952 0.6499 22 1 5.6073 -11.1363 2.0509 23 1 4.7419 -12.0069 -0.0404 24 1 6.4576 -10.2931 -0.0578 25 1 -0.3634 0.0027 1.0276 26 1 -0.3633 0.8886 -0.5162 27 1 -0.3633 -0.8913 -0.5114 28 1 2.0560 2.1075 -0.0005 29 1 3.8889 -3.2559 -0.0009 30 1 3.2187 -5.2604 -2.0138 31 1 2.0305 -6.4423 -1.4133 32 1 1.5066 -4.7999 -1.8554 33 1 3.0581 -5.4104 2.6503 34 1 4.7703 -5.8706 2.4918 35 1 4.2457 -4.2283 2.0499 36 1 2.3876 -7.4147 0.6385 37 1 2.4092 -10.7502 0.6604 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329166155.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:26 Heat of formation + Delta-G solvation = 8.354259 kcal Electronic energy + Delta-G solvation = -20246.573978 eV Core-core repulsion = 17026.692223 eV Total energy + Delta-G solvation = -3219.881755 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.13458 -41.01421 -38.40329 -35.78686 -35.63611 -33.91785 -33.10199 -31.06356 -30.20313 -29.08863 -26.13607 -25.94788 -24.02050 -22.66331 -21.64310 -21.61877 -19.56594 -19.16090 -18.83182 -17.71378 -17.10271 -16.59600 -16.12246 -15.70791 -15.39381 -15.16273 -14.80984 -14.69176 -14.21225 -14.15716 -14.10010 -13.53642 -13.34502 -13.25003 -12.95484 -12.77563 -12.66897 -12.38253 -12.33704 -12.16352 -11.77856 -11.56398 -11.37119 -11.32793 -11.01299 -10.38263 -10.27478 -9.04945 -7.93739 -5.23394 0.07454 0.73592 1.48359 1.49567 1.57850 1.77075 2.01645 2.29658 2.57188 2.86992 3.40137 3.55722 3.70855 3.90416 3.97404 4.10236 4.11697 4.27263 4.45772 4.51969 4.67981 4.79272 4.80640 4.84027 4.86376 4.94605 4.97767 5.06568 5.24260 5.33834 5.40211 5.43561 5.53143 6.26588 6.27287 6.90378 7.07371 7.33597 8.04728 8.29590 9.29585 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.041824 B = 0.003778 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.312106 B = 7408.925752 C = 7759.892795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.174 4.174 3 C -0.033 4.033 4 O 0.134 5.866 5 N -0.348 5.348 6 C -0.056 4.056 7 C 0.594 3.406 8 O -0.552 6.552 9 N -0.693 5.693 10 C 0.150 3.850 11 H 0.069 0.931 12 C -0.143 4.143 13 C 0.169 3.831 14 H 0.059 0.941 15 C -0.155 4.155 16 N -0.728 5.728 17 C -0.237 4.237 18 H 0.079 0.921 19 C -0.073 4.073 20 N -0.969 5.969 21 Si 0.972 3.028 22 H -0.289 1.289 23 H -0.298 1.298 24 H -0.268 1.268 25 H 0.078 0.922 26 H 0.105 0.895 27 H 0.057 0.943 28 H 0.278 0.722 29 H 0.412 0.588 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.036 0.964 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.373 0.627 37 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.418 25.587 -2.072 25.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.180 4.180 3 C -0.114 4.114 4 O 0.055 5.945 5 N -0.047 5.047 6 C -0.214 4.214 7 C 0.379 3.621 8 O -0.429 6.429 9 N -0.345 5.345 10 C 0.045 3.955 11 H 0.087 0.913 12 C -0.201 4.201 13 C 0.060 3.940 14 H 0.077 0.923 15 C -0.215 4.215 16 N -0.369 5.369 17 C -0.369 4.369 18 H 0.097 0.903 19 C -0.265 4.265 20 N -0.619 5.619 21 Si 0.801 3.199 22 H -0.217 1.217 23 H -0.224 1.224 24 H -0.193 1.193 25 H 0.096 0.904 26 H 0.123 0.877 27 H 0.076 0.924 28 H 0.294 0.706 29 H 0.249 0.751 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.206 0.794 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.133 24.598 -2.092 24.687 hybrid contribution -0.263 -1.164 0.151 1.203 sum -0.130 23.434 -1.942 23.514 Atomic orbital electron populations 1.20216 0.85853 1.04063 1.03441 1.21696 0.99972 0.90033 1.06292 1.26690 0.80334 1.02654 1.01676 1.84743 1.30816 1.14263 1.64635 1.74179 1.21436 0.92749 1.16305 1.23424 0.90863 0.96537 1.10526 1.17199 0.85306 0.83326 0.76282 1.90760 1.18573 1.82307 1.51222 1.45794 1.10038 1.05558 1.73065 1.21047 0.98364 0.78839 0.97286 0.91311 1.21935 1.01448 1.01297 0.95469 1.20522 0.95003 0.83836 0.94689 0.92344 1.22300 1.00789 1.00065 0.98298 1.42424 1.05828 0.99896 1.88729 1.19583 0.89367 0.86893 1.41042 0.90323 1.25521 0.97949 0.99296 1.03747 1.69818 1.16280 1.16370 1.59450 0.85169 0.78687 0.78760 0.77300 1.21652 1.22446 1.19279 0.90381 0.87653 0.92354 0.70609 0.75130 0.91962 0.92249 0.92986 0.94471 0.93498 0.91725 0.79438 0.94066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.25 10.01 71.24 0.71 -0.54 16 2 C -0.17 -3.21 6.34 -19.53 -0.12 -3.33 16 3 C -0.03 -0.34 12.24 67.15 0.82 0.48 16 4 O 0.13 2.20 11.18 71.91 0.80 3.01 16 5 N -0.35 -8.04 11.84 -49.51 -0.59 -8.63 16 6 C -0.06 -1.43 7.19 42.96 0.31 -1.12 16 7 C 0.59 18.71 7.82 86.93 0.68 19.39 16 8 O -0.55 -20.39 15.00 -3.69 -0.06 -20.45 16 9 N -0.69 -21.00 4.38 -444.94 -1.95 -22.95 16 10 C 0.15 5.35 2.21 44.99 0.10 5.44 16 11 H 0.07 2.76 7.57 -2.39 -0.02 2.74 16 12 C -0.14 -5.14 9.33 71.98 0.67 -4.47 16 13 C 0.17 6.59 2.52 44.99 0.11 6.71 16 14 H 0.06 2.23 8.08 -2.39 -0.02 2.21 16 15 C -0.15 -5.59 9.33 71.98 0.67 -4.91 16 16 N -0.73 -36.20 4.43 -322.93 -1.43 -37.63 16 17 C -0.24 -12.92 9.93 84.03 0.83 -12.08 16 18 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 19 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 20 N -0.97 -59.22 13.06 21.65 0.28 -58.94 16 21 Si 0.97 45.94 29.55 68.60 2.03 47.96 16 22 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 23 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 1.30 6.89 -2.39 -0.02 1.28 16 28 H 0.28 -0.57 8.06 -2.91 -0.02 -0.60 16 29 H 0.41 11.04 8.15 -92.71 -0.76 10.28 16 30 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.06 2.43 7.45 -2.39 -0.02 2.41 16 32 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 35 H 0.06 1.94 7.44 -2.38 -0.02 1.92 16 36 H 0.37 20.25 7.59 -92.71 -0.70 19.55 16 37 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -70.30 319.40 3.99 -66.31 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: -0.36 Total: 29.42 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 5.26 Total: 1.89 kcal Atomic # 7 Polarization: -124.46 SS G_CDS: -3.68 Total: -128.14 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.75 Total: -17.44 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -70.30 3.99 -66.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329166155.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.669 kcal (2) G-P(sol) polarization free energy of solvation -70.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds