Wall clock time and date at job start Mon Mar 30 2020 01:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35312 * 128.03775 * 2 1 4 4 O 1.34012 * 106.66625 * 180.23608 * 3 2 1 5 5 N 1.20904 * 111.84882 * 359.75370 * 4 3 2 6 6 C 1.30987 * 111.43963 * 359.97438 * 5 4 3 7 7 C 1.48324 * 126.94144 * 179.97438 * 6 5 4 8 8 O 1.21494 * 120.00094 * 180.29791 * 7 6 5 9 9 N 1.34784 * 119.99799 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99971 * 179.97438 * 9 7 6 11 11 H 1.09007 * 109.47230 * 34.99566 * 10 9 7 12 12 C 1.53001 * 109.47277 * 275.00026 * 10 9 7 13 13 C 1.52990 * 109.47333 * 154.99849 * 10 9 7 14 14 H 1.09000 * 109.47240 * 60.00097 * 13 10 9 15 15 C 1.53000 * 109.47456 * 300.00292 * 13 10 9 16 16 N 1.46499 * 109.47333 * 179.97438 * 13 10 9 17 17 C 1.36945 * 119.99940 * 204.99758 * 16 13 10 18 18 H 1.07999 * 120.00081 * 0.02562 * 17 16 13 19 19 C 1.38812 * 119.99633 * 179.97438 * 17 16 13 20 20 N 1.31624 * 119.99974 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00216 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46712 * 90.00052 * 21 19 17 23 23 H 1.48504 * 109.46856 * 209.99822 * 21 19 17 24 24 H 1.48491 * 109.47281 * 329.99973 * 21 19 17 25 25 H 1.09000 * 109.47197 * 270.15982 * 1 2 3 26 26 H 1.09000 * 109.47126 * 30.16086 * 1 2 3 27 27 H 1.09003 * 109.47322 * 150.16101 * 1 2 3 28 28 H 1.08003 * 126.66643 * 359.96579 * 3 2 1 29 29 H 0.96999 * 120.00044 * 0.02562 * 9 7 6 30 30 H 1.09000 * 109.47576 * 179.97438 * 12 10 9 31 31 H 1.08995 * 109.46954 * 300.00156 * 12 10 9 32 32 H 1.09005 * 109.47307 * 59.99945 * 12 10 9 33 33 H 1.08995 * 109.47755 * 180.02562 * 15 13 10 34 34 H 1.09000 * 109.46737 * 300.00113 * 15 13 10 35 35 H 1.08996 * 109.47331 * 59.99431 * 15 13 10 36 36 H 0.96999 * 119.99984 * 25.00303 * 16 13 10 37 37 H 0.96991 * 119.99951 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5887 0.5774 -0.0053 5 7 3.5988 -0.6316 -0.0036 6 6 2.3837 -1.1206 0.0035 7 6 1.9992 -2.5531 0.0071 8 8 0.8255 -2.8671 0.0084 9 7 2.9519 -3.5065 0.0035 10 6 2.5722 -4.9214 0.0076 11 1 1.6617 -5.0551 -0.5768 12 6 2.3262 -5.3793 1.4466 13 6 3.6993 -5.7538 -0.6068 14 1 4.6096 -5.6202 -0.0224 15 6 3.9453 -5.2959 -2.0458 16 7 3.3198 -7.1688 -0.6021 17 6 4.2880 -8.1373 -0.6058 18 1 5.3312 -7.8580 -0.6117 19 6 3.9283 -9.4780 -0.6008 20 7 4.8588 -10.4090 -0.6039 21 14 2.1239 -9.9611 -0.5898 22 1 1.6381 -10.0922 -1.9870 23 1 1.9632 -11.2588 0.1140 24 1 1.3360 -8.9164 0.1122 25 1 -0.3633 0.0029 1.0277 26 1 -0.3633 0.8885 -0.5163 27 1 -0.3634 -0.8914 -0.5113 28 1 2.0559 2.1075 -0.0005 29 1 3.8889 -3.2558 -0.0011 30 1 2.0432 -6.4320 1.4497 31 1 3.2365 -5.2457 2.0310 32 1 1.5231 -4.7864 1.8844 33 1 4.7480 -5.8892 -2.4837 34 1 3.0350 -5.4295 -2.6302 35 1 4.2278 -4.2432 -2.0489 36 1 2.3828 -7.4196 -0.5964 37 1 4.6075 -11.3458 -0.6008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329166157.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:30 Heat of formation + Delta-G solvation = 11.228447 kcal Electronic energy + Delta-G solvation = -20317.358719 eV Core-core repulsion = 17097.601598 eV Total energy + Delta-G solvation = -3219.757121 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.13605 -41.04050 -38.52238 -35.84970 -35.64754 -33.98400 -33.22666 -31.28774 -30.57093 -29.09186 -26.13534 -25.76700 -23.90896 -22.66822 -21.77169 -21.61067 -20.00698 -19.20117 -18.83351 -17.74059 -17.23262 -16.47473 -16.17599 -15.89396 -15.49600 -15.06255 -14.84648 -14.64180 -14.30884 -14.21899 -14.10833 -13.86175 -13.37447 -13.30572 -13.12487 -12.80779 -12.70892 -12.44266 -12.35999 -12.10797 -11.82871 -11.57215 -11.37058 -11.36574 -11.06643 -10.38856 -10.29938 -9.36881 -8.02852 -5.37205 0.06924 0.73210 1.38554 1.40230 1.47114 1.74931 2.00820 2.29193 2.47606 2.85750 3.29095 3.51954 3.59295 3.70647 3.92135 4.05849 4.09854 4.21159 4.45251 4.49855 4.63569 4.75354 4.79375 4.82817 4.83754 4.91200 4.96417 5.04644 5.21436 5.30477 5.37850 5.40428 5.75979 6.19842 6.25326 6.87962 7.05107 7.06989 7.79095 7.98269 9.18320 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.037849 B = 0.004106 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.608156 B = 6817.916909 C = 7235.556487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.174 4.174 3 C -0.034 4.034 4 O 0.132 5.868 5 N -0.349 5.349 6 C -0.056 4.056 7 C 0.596 3.404 8 O -0.550 6.550 9 N -0.694 5.694 10 C 0.146 3.854 11 H 0.079 0.921 12 C -0.150 4.150 13 C 0.172 3.828 14 H 0.058 0.942 15 C -0.156 4.156 16 N -0.743 5.743 17 C -0.225 4.225 18 H 0.062 0.938 19 C -0.058 4.058 20 N -0.982 5.982 21 Si 0.947 3.053 22 H -0.281 1.281 23 H -0.296 1.296 24 H -0.252 1.252 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.277 0.723 29 H 0.412 0.588 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.042 0.958 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.365 0.635 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.067 27.647 1.879 28.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.179 4.179 3 C -0.115 4.115 4 O 0.054 5.946 5 N -0.048 5.048 6 C -0.214 4.214 7 C 0.381 3.619 8 O -0.426 6.426 9 N -0.346 5.346 10 C 0.041 3.959 11 H 0.097 0.903 12 C -0.208 4.208 13 C 0.063 3.937 14 H 0.077 0.923 15 C -0.216 4.216 16 N -0.387 5.387 17 C -0.356 4.356 18 H 0.080 0.920 19 C -0.250 4.250 20 N -0.633 5.633 21 Si 0.775 3.225 22 H -0.207 1.207 23 H -0.223 1.223 24 H -0.176 1.176 25 H 0.097 0.903 26 H 0.122 0.878 27 H 0.078 0.922 28 H 0.293 0.707 29 H 0.249 0.751 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.199 0.801 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.487 26.651 1.884 27.747 hybrid contribution -1.009 -0.913 -0.073 1.362 sum -8.496 25.738 1.811 27.165 Atomic orbital electron populations 1.20219 0.85784 1.04070 1.03470 1.21691 0.99978 0.89990 1.06262 1.26690 0.80371 1.02695 1.01701 1.84746 1.30848 1.14297 1.64676 1.74194 1.21529 0.92742 1.16291 1.23437 0.90803 0.96626 1.10495 1.17146 0.85281 0.83228 0.76227 1.90754 1.18429 1.82266 1.51188 1.45784 1.10119 1.05522 1.73148 1.21099 0.98397 0.78972 0.97450 0.90323 1.22014 1.01825 1.01526 0.95416 1.20487 0.95401 0.82766 0.95036 0.92347 1.22279 1.01187 1.00256 0.97885 1.42595 1.04571 1.01216 1.90339 1.18966 0.89107 0.86498 1.41042 0.92031 1.25396 1.01277 0.95604 1.02722 1.69864 1.33639 1.00014 1.59733 0.85530 0.81334 0.77645 0.78022 1.20729 1.22286 1.17608 0.90289 0.87793 0.92242 0.70709 0.75115 0.91878 0.91974 0.92534 0.93848 0.93502 0.91523 0.80125 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.01 71.24 0.71 -0.42 16 2 C -0.17 -2.98 6.34 -19.54 -0.12 -3.10 16 3 C -0.03 -0.33 12.24 67.14 0.82 0.49 16 4 O 0.13 2.10 11.18 71.92 0.80 2.91 16 5 N -0.35 -7.76 11.84 -49.52 -0.59 -8.35 16 6 C -0.06 -1.35 7.19 42.96 0.31 -1.04 16 7 C 0.60 17.45 7.81 86.93 0.68 18.13 16 8 O -0.55 -18.72 15.00 -3.70 -0.06 -18.77 16 9 N -0.69 -19.54 4.38 -444.95 -1.95 -21.49 16 10 C 0.15 4.73 2.21 44.99 0.10 4.83 16 11 H 0.08 2.74 7.57 -2.38 -0.02 2.72 16 12 C -0.15 -4.82 9.33 71.98 0.67 -4.15 16 13 C 0.17 6.34 2.52 44.99 0.11 6.45 16 14 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 15 C -0.16 -5.36 9.34 71.98 0.67 -4.69 16 16 N -0.74 -33.92 4.23 -322.95 -1.37 -35.29 16 17 C -0.23 -12.57 10.41 84.03 0.87 -11.70 16 18 H 0.06 3.75 8.06 -2.91 -0.02 3.72 16 19 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 20 N -0.98 -62.65 13.97 21.65 0.30 -62.35 16 21 Si 0.95 45.53 27.74 68.60 1.90 47.43 16 22 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 23 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 24 H -0.25 -10.95 6.52 99.48 0.65 -10.30 16 25 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 1.22 6.89 -2.39 -0.02 1.21 16 28 H 0.28 -0.73 8.06 -2.91 -0.02 -0.75 16 29 H 0.41 10.45 8.15 -92.71 -0.76 9.70 16 30 H 0.06 2.22 7.44 -2.39 -0.02 2.20 16 31 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.91 7.45 -2.39 -0.02 1.89 16 36 H 0.37 16.30 5.44 -92.71 -0.50 15.79 16 37 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -72.59 316.27 4.13 -68.46 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -0.22 Total: 25.59 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 5.30 Total: 1.86 kcal Atomic # 7 Polarization: -123.87 SS G_CDS: -3.60 Total: -127.47 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.75 Total: -15.87 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.90 Total: 47.43 kcal Total: -72.59 4.13 -68.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329166157.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.687 kcal (2) G-P(sol) polarization free energy of solvation -72.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds