Wall clock time and date at job start Mon Mar 30 2020 01:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34486 * 126.83660 * 2 1 4 4 N 1.36452 * 108.85653 * 180.24979 * 3 2 1 5 5 H 0.96999 * 124.84619 * 179.72569 * 4 3 2 6 6 C 1.34655 * 110.29882 * 359.75026 * 4 3 2 7 7 C 1.36777 * 108.39654 * 0.02562 * 6 4 3 8 8 C 1.47263 * 126.93839 * 179.97438 * 7 6 4 9 9 O 1.21635 * 119.99568 * 180.02562 * 8 7 6 10 10 N 1.34770 * 120.00465 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00423 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47361 * 180.02562 * 11 10 8 13 13 H 1.08994 * 109.47294 * 64.99703 * 12 11 10 14 14 C 1.53006 * 109.47104 * 185.00342 * 12 11 10 15 15 O 1.42900 * 109.47466 * 54.99437 * 14 12 11 16 16 N 1.46505 * 109.47024 * 304.99744 * 12 11 10 17 17 C 1.36931 * 119.99788 * 155.00126 * 16 12 11 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 12 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 12 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48508 * 109.46872 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99997 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00044 * 21 19 17 25 25 H 1.08996 * 109.47531 * 270.14696 * 1 2 3 26 26 H 1.09005 * 109.47273 * 30.15057 * 1 2 3 27 27 H 1.09001 * 109.47369 * 150.14657 * 1 2 3 28 28 H 1.07996 * 125.57183 * 0.03439 * 3 2 1 29 29 H 1.07997 * 125.80521 * 180.02562 * 6 4 3 30 30 H 0.96998 * 119.99979 * 359.97438 * 10 8 7 31 31 H 1.09005 * 109.46957 * 59.99705 * 11 10 8 32 32 H 1.09002 * 109.46680 * 300.00186 * 11 10 8 33 33 H 1.08997 * 109.47191 * 175.00471 * 14 12 11 34 34 H 1.09004 * 109.46584 * 294.99655 * 14 12 11 35 35 H 0.96700 * 113.99900 * 180.02562 * 15 14 12 36 36 H 0.97000 * 119.99792 * 334.99921 * 16 12 11 37 37 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6552 -0.0056 5 1 4.3840 1.2413 -0.0106 6 6 3.6656 -0.6903 -0.0038 7 6 2.3863 -1.1741 0.0025 8 6 1.9749 -2.5881 0.0059 9 8 0.7935 -2.8777 0.0112 10 7 2.9072 -3.5613 0.0033 11 6 2.4979 -4.9679 0.0061 12 6 3.7404 -5.8606 0.0029 13 1 4.2921 -5.7190 0.9322 14 6 3.3157 -7.3254 -0.1200 15 8 2.4943 -7.4878 -1.2780 16 7 4.5954 -5.5034 -1.1319 17 6 5.9395 -5.7606 -1.0840 18 1 6.3693 -6.2271 -0.2099 19 6 6.7487 -5.4273 -2.1616 20 7 6.2249 -4.8592 -3.2270 21 14 8.5811 -5.7852 -2.0994 22 1 8.9172 -6.4225 -0.8008 23 1 8.9444 -6.7016 -3.2099 24 1 9.3384 -4.5153 -2.2377 25 1 -0.3634 0.0026 1.0276 26 1 -0.3634 0.8887 -0.5162 27 1 -0.3634 -0.8913 -0.5115 28 1 1.9868 2.1058 0.0005 29 1 4.5663 -1.2861 -0.0069 30 1 3.8493 -3.3303 -0.0013 31 1 1.8996 -5.1740 -0.8814 32 1 1.9064 -5.1723 0.8986 33 1 4.2014 -7.9541 -0.2116 34 1 2.7539 -7.6164 0.7676 35 1 2.1874 -8.3939 -1.4186 36 1 4.2094 -5.0847 -1.9171 37 1 6.7905 -4.6259 -3.9798 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331833747.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:03 Heat of formation + Delta-G solvation = -62.532180 kcal Electronic energy + Delta-G solvation = -20288.532467 eV Core-core repulsion = 17065.576846 eV Total energy + Delta-G solvation = -3222.955622 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.03127 -40.10780 -38.49008 -36.34704 -35.12579 -33.28978 -33.18754 -31.05259 -29.73750 -27.39319 -26.61693 -25.60592 -23.53267 -21.61053 -20.76236 -20.11596 -19.36693 -19.07900 -18.13916 -17.20500 -17.09052 -16.34254 -16.12307 -15.49756 -15.31365 -14.97508 -14.85474 -14.66165 -14.36074 -14.27354 -13.84067 -13.59605 -13.53282 -13.23345 -13.01770 -12.73367 -12.63857 -12.29772 -12.17904 -11.83766 -11.71111 -11.03079 -10.79036 -10.69853 -10.00172 -9.46927 -9.13639 -8.98769 -7.87954 -5.17406 0.83284 1.50162 1.52174 1.54365 1.60935 2.34688 2.54504 2.60202 2.66375 3.44455 3.63532 3.93113 4.02254 4.06471 4.16934 4.33350 4.47082 4.51001 4.58512 4.63997 4.73878 4.93505 4.94340 4.98024 5.02189 5.19198 5.26487 5.37730 5.56101 5.64668 5.88367 6.00150 6.30390 6.70906 6.79540 7.08668 7.38488 7.44235 8.10776 8.37283 9.35115 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016545 B = 0.005670 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.967020 B = 4937.071586 C = 6294.371427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.151 4.151 3 C -0.007 4.007 4 N -0.533 5.533 5 H 0.436 0.564 6 C 0.061 3.939 7 C -0.267 4.267 8 C 0.578 3.422 9 O -0.595 6.595 10 N -0.711 5.711 11 C 0.132 3.868 12 C 0.162 3.838 13 H 0.080 0.920 14 C 0.065 3.935 15 O -0.584 6.584 16 N -0.722 5.722 17 C -0.234 4.234 18 H 0.082 0.918 19 C -0.071 4.071 20 N -0.967 5.967 21 Si 0.969 3.031 22 H -0.264 1.264 23 H -0.303 1.303 24 H -0.295 1.295 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.044 0.956 28 H 0.208 0.792 29 H 0.185 0.815 30 H 0.407 0.593 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.385 0.615 36 H 0.372 0.628 37 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.729 9.188 9.817 14.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.157 4.157 3 C -0.135 4.135 4 N -0.128 5.128 5 H 0.277 0.723 6 C -0.078 4.078 7 C -0.278 4.278 8 C 0.368 3.632 9 O -0.478 6.478 10 N -0.361 5.361 11 C 0.008 3.992 12 C 0.053 3.947 13 H 0.098 0.902 14 C -0.016 4.016 15 O -0.391 6.391 16 N -0.361 5.361 17 C -0.366 4.366 18 H 0.100 0.900 19 C -0.263 4.263 20 N -0.618 5.618 21 Si 0.799 3.201 22 H -0.188 1.188 23 H -0.231 1.231 24 H -0.222 1.222 25 H 0.081 0.919 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.225 0.775 29 H 0.202 0.798 30 H 0.243 0.757 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.233 0.767 36 H 0.203 0.797 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.157 9.662 9.865 14.740 hybrid contribution 1.511 -0.782 -0.711 1.844 sum -3.646 8.880 9.154 13.264 Atomic orbital electron populations 1.20089 0.89467 1.02023 1.01682 1.20832 0.96206 0.90964 1.07733 1.22047 0.82031 0.99922 1.09516 1.41512 1.09018 1.05995 1.56272 0.72321 1.22157 0.98211 0.85011 1.02377 1.20485 0.94582 0.92123 1.20569 1.17896 0.84948 0.85355 0.75009 1.90656 1.18744 1.84681 1.53678 1.45787 1.10066 1.05865 1.74412 1.21319 0.96755 0.80055 1.01112 1.20845 0.90076 0.91631 0.92189 0.90179 1.22880 0.93114 0.98272 0.87356 1.86536 1.70239 1.34407 1.47920 1.42486 1.04151 1.72526 1.16969 1.19671 0.84769 1.31658 1.00492 0.89990 1.25471 1.01856 1.02550 0.96426 1.69867 1.35566 1.49285 1.07085 0.85145 0.80951 0.76735 0.77290 1.18820 1.23108 1.22190 0.91907 0.89932 0.93722 0.77529 0.79818 0.75674 0.93590 0.90855 0.94379 0.91705 0.76716 0.79660 0.94330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.02 9.97 71.23 0.71 -1.31 16 2 C -0.15 -4.29 6.35 -18.52 -0.12 -4.41 16 3 C -0.01 -0.14 11.82 83.12 0.98 0.84 16 4 N -0.53 -9.74 5.90 -194.56 -1.15 -10.89 16 5 H 0.44 4.47 8.96 -92.71 -0.83 3.64 16 6 C 0.06 1.56 11.40 83.92 0.96 2.52 16 7 C -0.27 -8.83 6.29 -19.04 -0.12 -8.95 16 8 C 0.58 22.80 7.81 86.62 0.68 23.48 16 9 O -0.59 -26.98 15.32 -4.14 -0.06 -27.05 16 10 N -0.71 -26.52 5.38 -466.52 -2.51 -29.03 16 11 C 0.13 4.99 5.12 86.38 0.44 5.43 16 12 C 0.16 6.12 2.84 44.99 0.13 6.25 16 13 H 0.08 2.80 8.08 -2.39 -0.02 2.78 16 14 C 0.06 2.17 6.86 71.98 0.49 2.66 16 15 O -0.58 -21.01 12.64 -148.98 -1.88 -22.89 16 16 N -0.72 -34.50 4.51 -322.93 -1.46 -35.96 16 17 C -0.23 -12.06 9.93 84.04 0.83 -11.22 16 18 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 19 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 20 N -0.97 -57.77 13.06 21.65 0.28 -57.49 16 21 Si 0.97 44.07 29.55 68.60 2.03 46.09 16 22 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 23 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 24 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 25 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.04 1.49 6.86 -2.39 -0.02 1.47 16 28 H 0.21 2.24 8.06 -2.91 -0.02 2.21 16 29 H 0.18 4.27 7.45 -2.91 -0.02 4.25 16 30 H 0.41 14.68 7.08 -92.71 -0.66 14.02 16 31 H 0.05 2.01 7.40 -2.38 -0.02 1.99 16 32 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.38 9.74 9.12 -74.06 -0.68 9.07 16 36 H 0.37 20.35 7.80 -92.71 -0.72 19.63 16 37 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 Total: -1.00 -75.41 319.22 -1.05 -76.46 By element: Atomic # 1 Polarization: 50.60 SS G_CDS: -1.75 Total: 48.85 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 5.45 Total: 11.91 kcal Atomic # 7 Polarization: -128.54 SS G_CDS: -4.83 Total: -133.37 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -1.95 Total: -49.94 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -75.41 -1.05 -76.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331833747.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.925 kcal (2) G-P(sol) polarization free energy of solvation -75.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds