Wall clock time and date at job start Mon Mar 30 2020 01:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35456 * 126.77353 * 2 1 4 4 C 1.41379 * 103.98025 * 180.02562 * 3 2 1 5 5 C 1.50706 * 126.79700 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46817 * 125.00078 * 5 4 3 7 7 O 1.21282 * 120.00041 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00033 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00165 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.47029 * 34.99481 * 9 8 6 11 11 C 1.52995 * 109.47133 * 275.00058 * 9 8 6 12 12 C 1.52998 * 109.47169 * 154.99751 * 9 8 6 13 13 N 1.46502 * 109.46872 * 304.99985 * 12 9 8 14 14 C 1.36942 * 119.99628 * 180.02562 * 13 12 9 15 15 H 1.08002 * 120.00148 * 359.97438 * 14 13 12 16 16 C 1.38815 * 119.99762 * 180.02562 * 14 13 12 17 17 N 1.31620 * 120.00056 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99723 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47555 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47497 * 119.99663 * 18 16 14 21 21 H 1.48507 * 109.46824 * 239.99563 * 18 16 14 22 22 N 1.30170 * 106.40009 * 0.26026 * 4 3 2 23 23 O 1.20931 * 111.60167 * 359.53778 * 22 4 3 24 24 H 1.08989 * 109.47612 * 89.99666 * 1 2 3 25 25 H 1.09000 * 109.46780 * 210.00141 * 1 2 3 26 26 H 1.09003 * 109.47169 * 329.99151 * 1 2 3 27 27 H 1.07998 * 128.00739 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.47318 * 244.99458 * 5 4 3 29 29 H 1.09000 * 109.47161 * 5.00088 * 5 4 3 30 30 H 0.96996 * 119.99850 * 359.97438 * 8 6 5 31 31 H 1.09001 * 109.47331 * 180.02562 * 11 9 8 32 32 H 1.09005 * 109.46692 * 299.99629 * 11 9 8 33 33 H 1.09002 * 109.47323 * 59.99756 * 11 9 8 34 34 H 1.08997 * 109.47253 * 64.99935 * 12 9 8 35 35 H 1.09004 * 109.46949 * 185.00452 * 12 9 8 36 36 H 0.96997 * 120.00314 * 359.97438 * 13 12 9 37 37 H 0.96998 * 119.99889 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5373 -0.0006 5 6 4.9211 1.3001 -0.0014 6 6 5.7674 0.8517 1.1621 7 8 5.3558 -0.0035 1.9172 8 7 6.9816 1.4009 1.3634 9 6 7.8041 0.9654 2.4948 10 1 7.6496 -0.0997 2.6676 11 6 7.4044 1.7483 3.7471 12 6 9.2794 1.2226 2.1817 13 7 9.6314 0.5700 0.9181 14 6 10.9082 0.6629 0.4321 15 1 11.6557 1.2175 0.9800 16 6 11.2416 0.0450 -0.7654 17 7 10.3306 -0.6305 -1.4334 18 14 12.9832 0.1722 -1.4288 19 1 13.8099 0.9811 -0.4974 20 1 13.5657 -1.1879 -1.5544 21 1 12.9584 0.8252 -2.7624 22 7 3.4764 -0.7563 -0.0066 23 8 2.3095 -1.0736 -0.0006 24 1 -0.3634 0.0001 -1.0275 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5140 27 1 2.0344 2.1271 -0.0004 28 1 5.4538 1.1093 -0.9330 29 1 4.7163 2.3670 0.0881 30 1 7.3108 2.0846 0.7593 31 1 8.0167 1.4246 4.5888 32 1 7.5589 2.8134 3.5743 33 1 6.3533 1.5650 3.9702 34 1 9.4511 2.2956 2.0966 35 1 9.8969 0.8183 2.9838 36 1 8.9602 0.0716 0.4262 37 1 10.5637 -1.0626 -2.2700 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483115395.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:31 Heat of formation + Delta-G solvation = 1.212386 kcal Electronic energy + Delta-G solvation = -19937.921320 eV Core-core repulsion = 16717.729869 eV Total energy + Delta-G solvation = -3220.191450 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.88481 -40.85775 -37.79705 -35.65906 -35.41308 -34.23317 -33.16623 -31.83057 -29.89973 -28.54682 -27.43973 -24.63771 -24.10855 -23.02762 -21.62363 -20.73849 -19.22581 -18.76029 -18.19700 -17.83031 -17.27327 -16.65632 -16.24722 -15.62955 -15.41833 -15.26995 -14.80935 -14.45252 -14.12079 -13.91449 -13.84727 -13.74890 -13.65041 -13.25748 -13.14448 -13.01247 -12.82919 -12.63503 -12.11698 -11.98922 -11.90985 -11.71471 -11.22481 -11.01502 -10.77840 -10.19097 -10.05654 -9.03705 -7.96033 -5.26351 0.63123 1.26456 1.47089 1.48293 1.58269 1.62924 2.25572 2.38449 2.54992 3.19603 3.38337 3.56359 3.75365 3.93570 4.05617 4.15981 4.26480 4.27924 4.35390 4.50051 4.56907 4.68671 4.77893 4.78624 4.85425 4.91998 4.95539 5.05774 5.11551 5.28591 5.32300 5.49155 5.57921 6.24302 6.57440 7.26491 7.31356 7.44626 8.04906 8.28394 9.27225 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.024324 B = 0.004012 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.841421 B = 6977.309709 C = 7808.948888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.041 4.041 3 C -0.229 4.229 4 C 0.012 3.988 5 C -0.059 4.059 6 C 0.511 3.489 7 O -0.581 6.581 8 N -0.704 5.704 9 C 0.140 3.860 10 H 0.050 0.950 11 C -0.143 4.143 12 C 0.146 3.854 13 N -0.745 5.745 14 C -0.243 4.243 15 H 0.081 0.919 16 C -0.076 4.076 17 N -0.970 5.970 18 Si 0.975 3.025 19 H -0.263 1.263 20 H -0.299 1.299 21 H -0.292 1.292 22 N -0.392 5.392 23 O 0.083 5.917 24 H 0.105 0.895 25 H 0.088 0.912 26 H 0.114 0.886 27 H 0.208 0.792 28 H 0.116 0.884 29 H 0.160 0.840 30 H 0.412 0.588 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.036 0.964 36 H 0.373 0.627 37 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.460 10.093 4.061 22.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C -0.251 4.251 4 C -0.147 4.147 5 C -0.099 4.099 6 C 0.298 3.702 7 O -0.461 6.461 8 N -0.356 5.356 9 C 0.034 3.966 10 H 0.068 0.932 11 C -0.202 4.202 12 C 0.020 3.980 13 N -0.388 5.388 14 C -0.375 4.375 15 H 0.099 0.901 16 C -0.269 4.269 17 N -0.621 5.621 18 Si 0.805 3.195 19 H -0.187 1.187 20 H -0.226 1.226 21 H -0.219 1.219 22 N -0.096 5.096 23 O 0.016 5.984 24 H 0.123 0.877 25 H 0.107 0.893 26 H 0.132 0.868 27 H 0.225 0.775 28 H 0.134 0.866 29 H 0.177 0.823 30 H 0.249 0.751 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.205 0.795 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -18.687 8.531 4.626 21.057 hybrid contribution 0.845 0.261 -0.959 1.304 sum -17.842 8.793 3.668 20.226 Atomic orbital electron populations 1.20559 0.80578 1.05981 1.05517 1.25456 0.98272 0.85440 1.01315 1.22771 0.89316 1.02655 1.10312 1.23293 0.97837 0.89898 1.03681 1.20123 0.89436 1.02461 0.97914 1.20844 0.82190 0.80970 0.86191 1.90690 1.73018 1.33232 1.49153 1.45887 1.16630 1.42456 1.30635 1.21073 0.89817 0.98570 0.87104 0.93175 1.21978 1.01310 1.00924 0.95984 1.21135 0.91921 0.96743 0.88238 1.42580 1.09838 1.63001 1.23421 1.19694 0.88773 1.26174 1.02830 0.90103 1.25603 1.01694 1.00918 0.98637 1.69853 1.34623 1.40242 1.17361 0.85045 0.79767 0.76777 0.77959 1.18717 1.22616 1.21893 1.73941 0.97583 1.18261 1.19822 1.84801 1.11260 1.34776 1.67588 0.87660 0.89335 0.86794 0.77523 0.86568 0.82265 0.75133 0.90367 0.90325 0.93244 0.93624 0.94628 0.79543 0.94155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.45 71.24 0.74 0.12 16 2 C -0.04 -0.86 7.49 25.04 0.19 -0.67 16 3 C -0.23 -4.74 11.05 22.40 0.25 -4.49 16 4 C 0.01 0.34 6.10 43.58 0.27 0.61 16 5 C -0.06 -1.55 6.30 29.10 0.18 -1.37 16 6 C 0.51 17.72 7.79 87.66 0.68 18.40 16 7 O -0.58 -25.38 15.27 -3.04 -0.05 -25.42 16 8 N -0.70 -22.72 4.52 -442.53 -2.00 -24.72 16 9 C 0.14 4.81 2.73 44.99 0.12 4.94 16 10 H 0.05 2.10 7.58 -2.38 -0.02 2.08 16 11 C -0.14 -3.79 9.48 71.98 0.68 -3.11 16 12 C 0.15 5.62 5.82 86.38 0.50 6.12 16 13 N -0.75 -37.51 5.43 -343.44 -1.87 -39.38 16 14 C -0.24 -13.38 9.99 84.03 0.84 -12.54 16 15 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 16 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 17 N -0.97 -60.17 13.06 21.65 0.28 -59.89 16 18 Si 0.98 46.07 29.55 68.60 2.03 48.10 16 19 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 20 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 22 N -0.39 -14.36 11.48 -49.55 -0.57 -14.93 16 23 O 0.08 2.54 11.20 71.70 0.80 3.34 16 24 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.11 0.49 8.14 -2.39 -0.02 0.48 16 27 H 0.21 2.40 8.06 -2.91 -0.02 2.37 16 28 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 29 H 0.16 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.41 11.84 8.60 -92.71 -0.80 11.05 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.37 20.60 7.33 -92.71 -0.68 19.92 16 37 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -80.38 323.65 3.17 -77.21 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: -0.39 Total: 31.61 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 4.93 Total: 4.09 kcal Atomic # 7 Polarization: -134.77 SS G_CDS: -4.15 Total: -138.92 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.76 Total: -22.08 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -80.38 3.17 -77.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483115395.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.417 kcal (2) G-P(sol) polarization free energy of solvation -80.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds