Wall clock time and date at job start Mon Mar 30 2020 01:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30006 * 127.33939 * 2 1 4 4 O 1.20661 * 112.30271 * 179.97438 * 3 2 1 5 5 C 1.33493 * 113.15384 * 359.97438 * 4 3 2 6 6 C 1.37357 * 106.34425 * 359.74268 * 5 4 3 7 7 C 1.47398 * 128.56693 * 180.25744 * 6 5 4 8 8 O 1.21604 * 120.00295 * 180.13141 * 7 6 5 9 9 N 1.34776 * 119.99785 * 0.14009 * 7 6 5 10 10 C 1.46497 * 119.99758 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.47468 * 324.99583 * 10 9 7 12 12 C 1.53009 * 109.47198 * 84.99708 * 10 9 7 13 13 C 1.53000 * 109.47206 * 204.99460 * 10 9 7 14 14 N 1.46501 * 109.46985 * 55.00086 * 13 10 9 15 15 C 1.46509 * 119.99972 * 270.00145 * 14 13 10 16 16 C 1.36936 * 120.00183 * 90.00069 * 14 13 10 17 17 H 1.08003 * 119.99754 * 20.38190 * 16 14 13 18 18 C 1.38810 * 120.00241 * 200.38237 * 16 14 13 19 19 N 1.31621 * 119.99823 * 15.00345 * 18 16 14 20 20 Si 1.86791 * 119.99986 * 195.00403 * 18 16 14 21 21 H 1.48504 * 109.46983 * 85.00489 * 20 18 16 22 22 H 1.48502 * 109.47126 * 205.00154 * 20 18 16 23 23 H 1.48495 * 109.47560 * 325.00222 * 20 18 16 24 24 H 1.09001 * 109.46760 * 90.02224 * 1 2 3 25 25 H 1.08993 * 109.47445 * 210.02425 * 1 2 3 26 26 H 1.09001 * 109.46542 * 330.02906 * 1 2 3 27 27 H 1.07995 * 126.82447 * 180.02562 * 5 4 3 28 28 H 0.97001 * 120.00338 * 359.97438 * 9 7 6 29 29 H 1.08997 * 109.47014 * 59.99597 * 12 10 9 30 30 H 1.08999 * 109.47208 * 179.97438 * 12 10 9 31 31 H 1.08996 * 109.46607 * 299.99712 * 12 10 9 32 32 H 1.09003 * 109.47445 * 175.00331 * 13 10 9 33 33 H 1.09009 * 109.47334 * 295.00051 * 13 10 9 34 34 H 1.08998 * 109.46666 * 95.12523 * 15 14 13 35 35 H 1.08995 * 109.46767 * 215.13020 * 15 14 13 36 36 H 1.08999 * 109.46780 * 335.12996 * 15 14 13 37 37 H 0.97000 * 119.99967 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2956 1.0336 0.0000 4 8 3.4609 0.7206 0.0005 5 6 3.6494 -0.6010 0.0015 6 6 2.3991 -1.1697 0.0075 7 6 2.0399 -2.5993 0.0161 8 8 0.8704 -2.9324 0.0182 9 7 3.0077 -3.5372 0.0218 10 6 2.6507 -4.9580 0.0309 11 1 1.7460 -5.1015 0.6215 12 6 2.4040 -5.4311 -1.4032 13 6 3.7946 -5.7673 0.6452 14 7 4.1105 -5.2359 1.9734 15 6 5.1098 -4.1745 2.1190 16 6 3.4717 -5.7311 3.0787 17 1 2.9988 -6.7014 3.0397 18 6 3.4319 -4.9862 4.2494 19 7 3.7364 -3.7059 4.2253 20 14 2.9463 -5.8008 5.8586 21 1 4.1403 -6.4362 6.4718 22 1 2.3989 -4.7780 6.7857 23 1 1.9138 -6.8357 5.5979 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3634 -0.8897 0.5142 26 1 -0.3632 0.8903 0.5134 27 1 4.5966 -1.1197 0.0025 28 1 3.9407 -3.2716 0.0198 29 1 3.3088 -5.2875 -1.9938 30 1 2.1388 -6.4883 -1.3964 31 1 1.5891 -4.8545 -1.8407 32 1 3.4944 -6.8115 0.7336 33 1 4.6748 -5.6953 0.0062 34 1 4.6107 -3.2057 2.1381 35 1 5.6597 -4.3184 3.0490 36 1 5.8025 -4.2098 1.2781 37 1 3.7082 -3.1853 5.0433 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498399092.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:01 Heat of formation + Delta-G solvation = 22.819029 kcal Electronic energy + Delta-G solvation = -21054.982193 eV Core-core repulsion = 17835.727677 eV Total energy + Delta-G solvation = -3219.254516 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.91960 -40.65145 -38.03619 -35.81670 -35.42443 -33.67964 -32.77944 -31.46530 -29.66271 -27.94850 -27.37844 -25.86947 -23.49231 -22.31379 -22.02731 -21.27408 -19.22504 -18.74881 -18.72299 -17.55321 -17.11357 -16.70899 -16.06469 -15.68350 -15.35815 -15.09736 -14.79449 -14.43109 -14.24115 -14.13705 -13.72324 -13.49440 -13.39765 -13.06909 -12.82475 -12.64665 -12.53868 -12.35862 -12.25624 -12.00706 -11.81612 -11.69029 -11.06164 -10.93946 -10.75826 -10.60128 -9.92852 -8.72797 -7.81004 -5.22823 0.13361 0.73528 1.44790 1.46217 1.52687 1.94001 2.25819 2.43285 2.52843 3.03417 3.32915 3.34565 3.73691 3.88231 4.02333 4.23917 4.42000 4.44814 4.55832 4.58418 4.62297 4.74052 4.80920 4.87449 4.94212 5.04720 5.14461 5.23821 5.41150 5.42895 5.67000 5.68933 5.82579 6.35371 6.62637 7.18164 7.20246 7.30071 7.93872 8.31720 9.21084 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017375 B = 0.006520 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.131262 B = 4293.177907 C = 4884.836848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.052 3.948 3 N -0.379 5.379 4 O 0.097 5.903 5 C 0.028 3.972 6 C -0.278 4.278 7 C 0.592 3.408 8 O -0.581 6.581 9 N -0.683 5.683 10 C 0.123 3.877 11 H 0.039 0.961 12 C -0.146 4.146 13 C 0.142 3.858 14 N -0.611 5.611 15 C 0.170 3.830 16 C -0.256 4.256 17 H 0.067 0.933 18 C -0.050 4.050 19 N -0.928 5.928 20 Si 0.955 3.045 21 H -0.284 1.284 22 H -0.303 1.303 23 H -0.275 1.275 24 H 0.097 0.903 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.267 0.733 28 H 0.405 0.595 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.014 0.986 35 H 0.009 0.991 36 H 0.044 0.956 37 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.629 3.199 -12.527 13.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.110 4.110 3 N -0.088 5.088 4 O 0.039 5.961 5 C -0.054 4.054 6 C -0.286 4.286 7 C 0.379 3.621 8 O -0.462 6.462 9 N -0.332 5.332 10 C 0.016 3.984 11 H 0.057 0.943 12 C -0.205 4.205 13 C 0.015 3.985 14 N -0.334 5.334 15 C 0.025 3.975 16 C -0.386 4.386 17 H 0.085 0.915 18 C -0.246 4.246 19 N -0.575 5.575 20 Si 0.785 3.215 21 H -0.210 1.210 22 H -0.230 1.230 23 H -0.201 1.201 24 H 0.116 0.884 25 H 0.093 0.907 26 H 0.108 0.892 27 H 0.283 0.717 28 H 0.241 0.759 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.032 0.968 35 H 0.028 0.972 36 H 0.062 0.938 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.681 4.346 -12.387 13.234 hybrid contribution -0.227 -0.927 1.496 1.775 sum 1.454 3.419 -10.891 11.507 Atomic orbital electron populations 1.20250 0.84322 1.03994 1.04465 1.25187 0.99845 0.86698 0.99306 1.73610 0.89797 1.23814 1.21539 1.84508 1.20916 1.23699 1.66946 1.27060 1.00859 0.83050 0.94427 1.22398 0.94287 0.95096 1.16808 1.17042 0.85375 0.83940 0.75725 1.90699 1.19993 1.82688 1.52868 1.45550 1.08902 1.06116 1.72649 1.21747 0.99885 0.80023 0.96741 0.94295 1.22028 1.02039 1.01692 0.94745 1.21400 0.95416 0.96279 0.85411 1.44128 1.43878 1.43450 1.01910 1.20694 0.89422 0.90620 0.96758 1.19455 1.29720 0.98983 0.90477 0.91516 1.25545 1.01975 0.95654 1.01394 1.70189 1.55138 1.05842 1.26323 0.85462 0.77889 0.77331 0.80842 1.21043 1.23010 1.20055 0.88441 0.90651 0.89193 0.71737 0.75903 0.90297 0.90405 0.94225 0.91690 0.90037 0.96787 0.97180 0.93791 0.94833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.06 10.15 71.24 0.72 -1.34 16 2 C 0.05 1.67 7.58 45.16 0.34 2.01 16 3 N -0.38 -11.70 12.01 -44.78 -0.54 -12.24 16 4 O 0.10 2.60 11.06 76.98 0.85 3.45 16 5 C 0.03 0.67 11.85 67.61 0.80 1.48 16 6 C -0.28 -8.98 6.47 -18.74 -0.12 -9.10 16 7 C 0.59 22.25 7.78 86.66 0.67 22.92 16 8 O -0.58 -25.95 15.35 -4.04 -0.06 -26.01 16 9 N -0.68 -22.51 4.42 -445.83 -1.97 -24.48 16 10 C 0.12 4.21 2.88 45.00 0.13 4.34 16 11 H 0.04 1.72 7.58 -2.39 -0.02 1.70 16 12 C -0.15 -3.78 9.48 71.99 0.68 -3.09 16 13 C 0.14 4.79 5.33 86.38 0.46 5.25 16 14 N -0.61 -27.15 2.78 -726.90 -2.02 -29.18 16 15 C 0.17 7.11 7.60 127.77 0.97 8.08 16 16 C -0.26 -13.41 9.68 84.03 0.81 -12.59 16 17 H 0.07 3.46 7.86 -2.91 -0.02 3.44 16 18 C -0.05 -2.76 5.06 84.86 0.43 -2.33 16 19 N -0.93 -53.13 10.67 21.65 0.23 -52.90 16 20 Si 0.95 45.30 29.58 68.60 2.03 47.33 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.07 2.46 7.09 -2.39 -0.02 2.45 16 26 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.27 3.66 7.68 -2.91 -0.02 3.64 16 28 H 0.40 11.08 6.37 -92.71 -0.59 10.48 16 29 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 2.16 8.03 -2.39 -0.02 2.14 16 33 H 0.08 2.17 7.86 -2.38 -0.02 2.15 16 34 H 0.01 0.63 6.97 -2.39 -0.02 0.61 16 35 H 0.01 0.46 7.22 -2.39 -0.02 0.44 16 36 H 0.04 1.40 7.83 -2.39 -0.02 1.38 16 37 H 0.24 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -71.30 314.56 4.92 -66.38 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.49 Total: 12.02 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 5.91 Total: 15.62 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -4.30 Total: -118.78 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: 0.79 Total: -22.56 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -71.30 4.92 -66.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498399092.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.200 kcal (2) G-P(sol) polarization free energy of solvation -71.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds