Wall clock time and date at job start Mon Mar 30 2020 00:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86792 * 120.00097 * 2 1 4 4 H 1.48497 * 109.47237 * 269.99871 * 3 2 1 5 5 H 1.48500 * 109.47184 * 30.00100 * 3 2 1 6 6 H 1.48509 * 109.46996 * 149.99931 * 3 2 1 7 7 C 1.38814 * 119.99664 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99935 * 0.02562 * 7 2 1 9 9 N 1.36932 * 119.99933 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00255 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47468 * 180.02562 * 10 9 7 12 12 N 1.46494 * 109.47506 * 180.02562 * 11 10 9 13 13 C 1.46501 * 120.00097 * 270.00180 * 12 11 10 14 14 C 1.52997 * 109.46889 * 264.77998 * 13 12 11 15 15 O 1.42902 * 109.47433 * 64.99851 * 14 13 12 16 16 C 1.34774 * 120.00420 * 89.99366 * 12 11 10 17 17 O 1.21634 * 119.99970 * 3.86286 * 16 12 11 18 18 C 1.47266 * 120.00377 * 183.85686 * 16 12 11 19 19 C 1.46690 * 126.94358 * 164.65482 * 18 16 12 20 20 C 1.34480 * 106.33441 * 179.97438 * 19 18 16 21 21 N 1.36450 * 108.85544 * 359.97438 * 20 19 18 22 22 H 0.96998 * 124.85475 * 180.02562 * 21 20 19 23 23 C 1.34655 * 110.29865 * 0.26402 * 21 20 19 24 24 H 0.97002 * 119.99660 * 359.97438 * 1 2 3 25 25 H 0.96998 * 120.00063 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.46882 * 59.99936 * 10 9 7 27 27 H 1.08998 * 109.47021 * 300.00601 * 10 9 7 28 28 H 1.08999 * 109.47183 * 59.99464 * 11 10 9 29 29 H 1.09010 * 109.47045 * 299.99923 * 11 10 9 30 30 H 1.08999 * 109.46781 * 24.77639 * 13 12 11 31 31 H 1.09001 * 109.47720 * 144.77587 * 13 12 11 32 32 H 1.09002 * 109.46832 * 184.99822 * 14 13 12 33 33 H 1.08995 * 109.47126 * 304.99430 * 14 13 12 34 34 H 0.96703 * 114.00148 * 180.02562 * 15 14 13 35 35 H 1.07995 * 126.83195 * 0.02562 * 19 18 16 36 36 H 1.07996 * 125.57706 * 179.97438 * 20 19 18 37 37 H 1.08004 * 125.80680 * 179.73494 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2023 0.0011 10 6 4.1120 -2.4710 0.0011 11 6 5.6162 -2.1915 0.0024 12 7 6.3487 -3.4602 0.0017 13 6 6.7140 -4.0957 1.2702 14 6 8.1421 -3.6971 1.6475 15 8 8.1933 -2.2915 1.9004 16 6 6.6864 -4.0429 -1.1657 17 8 6.4454 -3.4817 -2.2176 18 6 7.3471 -5.3590 -1.1678 19 6 7.4998 -6.2670 -2.3097 20 6 8.1632 -7.3432 -1.8511 21 7 8.4279 -7.1657 -0.5244 22 1 8.8979 -7.8019 0.0371 23 6 7.9388 -5.9835 -0.1045 24 1 -0.4850 0.8401 0.0004 25 1 3.8645 -0.3623 0.0014 26 1 3.8490 -3.0424 -0.8892 27 1 3.8483 -3.0428 0.8908 28 1 5.8789 -1.6203 0.8927 29 1 5.8803 -1.6196 -0.8873 30 1 6.0273 -3.7693 2.0511 31 1 6.6552 -5.1790 1.1641 32 1 8.4458 -4.2387 2.5434 33 1 8.8168 -3.9436 0.8278 34 1 9.0709 -1.9677 2.1454 35 1 7.1499 -6.1035 -3.3182 36 1 8.4411 -8.2067 -2.4371 37 1 8.0046 -5.5934 0.9005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501459076.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:56 Heat of formation + Delta-G solvation = 9.079054 kcal Electronic energy + Delta-G solvation = -20403.666103 eV Core-core repulsion = 17183.815777 eV Total energy + Delta-G solvation = -3219.850326 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.48637 -39.29329 -37.25797 -35.57715 -34.43421 -31.89583 -31.01561 -30.35454 -28.85602 -27.62133 -23.96475 -23.30237 -21.92033 -21.20257 -20.68516 -19.72933 -18.03107 -17.55562 -17.46500 -16.27838 -16.01094 -15.16328 -14.84057 -14.27965 -14.22007 -14.03016 -13.78415 -13.63271 -13.37852 -13.18764 -12.84644 -12.51945 -12.41761 -11.93881 -11.59054 -11.39023 -10.96835 -10.94106 -10.58923 -10.29060 -10.06329 -9.65025 -9.49615 -8.99608 -8.78277 -8.56956 -8.39235 -7.12446 -5.66658 -3.01689 1.65322 2.30863 2.92040 3.21264 3.47712 3.51698 3.54402 3.60828 3.95138 4.56338 4.64914 4.69872 4.86341 4.89498 4.93736 5.05592 5.18090 5.30717 5.52523 5.59966 5.68473 5.75821 5.86617 5.87557 5.95229 6.20606 6.48681 6.66079 6.70042 6.81646 6.99707 7.17705 7.39347 7.67095 8.09823 8.50644 8.52569 9.31545 10.04009 10.24319 11.51930 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.026053 B = 0.004522 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.475698 B = 6189.783256 C = 6754.593083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.240 4.240 8 H 0.089 0.911 9 N -0.753 5.753 10 C 0.146 3.854 11 C 0.111 3.889 12 N -0.595 5.595 13 C 0.087 3.913 14 C 0.047 3.953 15 O -0.559 6.559 16 C 0.582 3.418 17 O -0.536 6.536 18 C -0.216 4.216 19 C -0.141 4.141 20 C -0.023 4.023 21 N -0.554 5.554 22 H 0.415 0.585 23 C 0.010 3.990 24 H 0.259 0.741 25 H 0.361 0.639 26 H 0.030 0.970 27 H 0.024 0.976 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.377 0.623 35 H 0.148 0.852 36 H 0.169 0.831 37 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.974 -16.329 4.486 29.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.370 4.370 8 H 0.107 0.893 9 N -0.399 5.399 10 C 0.018 3.982 11 C -0.012 4.012 12 N -0.328 5.328 13 C -0.036 4.036 14 C -0.032 4.032 15 O -0.364 6.364 16 C 0.371 3.629 17 O -0.413 6.413 18 C -0.227 4.227 19 C -0.166 4.166 20 C -0.151 4.151 21 N -0.149 5.149 22 H 0.251 0.749 23 C -0.124 4.124 24 H 0.069 0.931 25 H 0.194 0.806 26 H 0.048 0.952 27 H 0.042 0.958 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.224 0.776 35 H 0.166 0.834 36 H 0.187 0.813 37 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 23.023 -16.246 3.819 28.435 hybrid contribution 1.332 0.846 0.488 1.652 sum 24.355 -15.399 4.307 29.135 Atomic orbital electron populations 1.69710 1.05096 1.25734 1.57948 1.24655 0.95256 0.97204 1.02138 0.86521 0.79207 0.84829 0.77889 1.20989 1.21778 1.20226 1.19054 0.80487 0.94770 1.42640 0.89280 1.42562 1.04051 1.02081 1.91235 1.20916 0.89036 0.89544 0.98743 1.21687 0.91898 0.84097 1.03506 1.47525 1.56470 1.23965 1.04805 1.22166 0.95127 0.98845 0.87502 1.22920 0.98049 0.83298 0.98930 1.86599 1.35549 1.22236 1.91991 1.17493 0.77986 0.84004 0.83375 1.90795 1.55072 1.64486 1.30916 1.20583 1.10120 0.97261 0.94709 1.22003 1.02804 0.93114 0.98659 1.21820 1.06908 1.01919 0.84428 1.41689 1.45966 1.17202 1.10070 0.74855 1.23114 1.01712 0.87683 0.99917 0.93140 0.80638 0.95208 0.95776 0.89916 0.89977 0.88732 0.87707 0.92740 0.92928 0.77640 0.83411 0.81349 0.79433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.65 13.97 55.49 0.78 -29.88 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.89 23.27 27.74 -169.99 -4.71 18.56 16 4 H -0.28 -7.44 7.11 56.52 0.40 -7.03 16 5 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.28 -6.83 6.52 56.52 0.37 -6.46 16 7 C -0.24 -7.27 10.47 -15.06 -0.16 -7.42 16 8 H 0.09 2.88 8.06 -52.48 -0.42 2.45 16 9 N -0.75 -19.67 5.41 -59.91 -0.32 -19.99 16 10 C 0.15 3.22 6.58 -4.04 -0.03 3.19 16 11 C 0.11 2.04 5.45 -4.05 -0.02 2.02 16 12 N -0.60 -9.14 2.43 -175.02 -0.43 -9.56 16 13 C 0.09 0.92 5.29 -4.04 -0.02 0.90 16 14 C 0.05 0.38 5.81 37.16 0.22 0.60 16 15 O -0.56 -5.73 13.07 -35.23 -0.46 -6.19 16 16 C 0.58 9.89 7.63 -12.59 -0.10 9.80 16 17 O -0.54 -11.50 16.56 5.25 0.09 -11.41 16 18 C -0.22 -2.82 6.08 -103.35 -0.63 -3.45 16 19 C -0.14 -1.68 11.00 -37.50 -0.41 -2.09 16 20 C -0.02 -0.18 11.89 -16.83 -0.20 -0.38 16 21 N -0.55 -3.46 5.90 -12.85 -0.08 -3.53 16 22 H 0.42 0.98 8.96 -40.82 -0.37 0.62 16 23 C 0.01 0.09 8.69 -16.84 -0.15 -0.06 16 24 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16 25 H 0.36 9.13 5.53 -40.82 -0.23 8.91 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 1.46 7.62 -51.93 -0.40 1.06 16 29 H 0.08 1.66 7.37 -51.92 -0.38 1.28 16 30 H 0.09 1.04 8.03 -51.93 -0.42 0.62 16 31 H 0.11 0.86 4.71 -51.93 -0.24 0.62 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.42 6.69 -51.93 -0.35 0.07 16 34 H 0.38 2.14 9.12 45.56 0.42 2.55 16 35 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.19 1.10 3.34 -52.48 -0.18 0.92 16 LS Contribution 308.48 15.07 4.65 4.65 Total: -1.00 -40.32 308.48 -5.93 -46.25 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -3.84 Total: 8.02 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -1.59 Total: 3.09 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: -0.05 Total: -62.97 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.37 Total: -17.60 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -4.71 Total: 18.56 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -40.32 -5.93 -46.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501459076.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.327 kcal (2) G-P(sol) polarization free energy of solvation -40.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds