Wall clock time and date at job start Mon Mar 30 2020 01:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42896 * 113.99747 * 2 1 4 4 C 1.52999 * 109.47042 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46940 * 66.06016 * 4 3 2 6 6 C 1.37093 * 119.99899 * 266.64978 * 5 4 3 7 7 H 1.08004 * 120.00122 * 142.11717 * 6 5 4 8 8 C 1.38952 * 120.00187 * 322.10854 * 6 5 4 9 9 N 1.31406 * 120.00218 * 157.75062 * 8 6 5 10 10 Si 1.86799 * 119.99837 * 337.75580 * 8 6 5 11 11 H 1.48506 * 109.47150 * 95.33719 * 10 8 6 12 12 H 1.48497 * 109.47212 * 215.33818 * 10 8 6 13 13 H 1.48495 * 109.47259 * 335.34093 * 10 8 6 14 14 C 1.34775 * 119.99728 * 86.64988 * 5 4 3 15 15 O 1.21294 * 120.00714 * 359.97438 * 14 5 4 16 16 C 1.50708 * 119.99773 * 179.72668 * 14 5 4 17 17 N 1.46498 * 109.47033 * 179.97438 * 16 14 5 18 18 C 1.36879 * 126.39570 * 265.02170 * 17 16 14 19 19 C 1.34671 * 106.81935 * 180.02562 * 18 17 16 20 20 N 1.34125 * 108.01908 * 359.97438 * 19 18 17 21 21 C 1.30500 * 109.25517 * 359.72857 * 20 19 18 22 22 C 1.50704 * 125.65295 * 180.28914 * 21 20 19 23 23 H 1.08993 * 109.47185 * 60.00434 * 1 2 3 24 24 H 1.09002 * 109.46675 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46856 * 299.99666 * 1 2 3 26 26 H 1.09005 * 109.47037 * 59.99967 * 3 2 1 27 27 H 1.09004 * 109.47471 * 300.00287 * 3 2 1 28 28 H 1.08998 * 109.47315 * 306.05707 * 4 3 2 29 29 H 1.09007 * 109.46951 * 186.05819 * 4 3 2 30 30 H 0.96996 * 120.00680 * 180.02562 * 9 8 6 31 31 H 1.09002 * 109.46456 * 299.99730 * 16 14 5 32 32 H 1.08996 * 109.47095 * 59.99502 * 16 14 5 33 33 H 1.08005 * 126.59390 * 0.03487 * 18 17 16 34 34 H 1.07996 * 125.99217 * 180.02562 * 19 18 17 35 35 H 1.09000 * 109.47546 * 270.17802 * 22 21 20 36 36 H 1.09005 * 109.46607 * 30.17793 * 22 21 20 37 37 H 1.09003 * 109.47396 * 150.17368 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9785 0.5872 -1.2615 6 6 4.1660 -0.7680 -1.3497 7 1 3.8920 -1.2934 -2.2527 8 6 4.7088 -1.4656 -0.2776 9 7 4.4987 -2.7574 -0.1602 10 14 5.7370 -0.5669 0.9970 11 1 4.8779 -0.1858 2.1468 12 1 6.8291 -1.4560 1.4683 13 1 6.3214 0.6555 0.3892 14 6 4.2017 1.3698 -2.3358 15 8 4.0353 2.5688 -2.2579 16 6 4.6634 0.7559 -3.6324 17 7 4.8322 1.8078 -4.6379 18 6 3.9083 2.1961 -5.5702 19 6 4.4715 3.1867 -6.2880 20 7 5.7055 3.3979 -5.8067 21 6 5.9262 2.5797 -4.8142 22 6 7.1935 2.5056 -4.0021 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8496 0.5532 0.8317 29 1 3.9783 2.1748 0.1091 30 1 4.8772 -3.2444 0.5884 31 1 5.6144 0.2471 -3.4750 32 1 3.9203 0.0380 -3.9794 33 1 2.9178 1.7868 -5.7043 34 1 4.0101 3.7184 -7.1069 35 1 7.8803 1.7966 -4.4643 36 1 7.6590 3.4906 -3.9646 37 1 6.9579 2.1763 -2.9901 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556908604.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:43 Heat of formation + Delta-G solvation = -0.165824 kcal Electronic energy + Delta-G solvation = -21148.625149 eV Core-core repulsion = 17928.373935 eV Total energy + Delta-G solvation = -3220.251214 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.64886 -39.05476 -37.16703 -35.03778 -33.39506 -32.14285 -31.31955 -29.90069 -27.31099 -26.31657 -25.84330 -24.75439 -22.61460 -20.93099 -19.85058 -18.97344 -17.50299 -16.78618 -16.30248 -15.87965 -15.56658 -14.86420 -14.75794 -14.61105 -14.33879 -13.76049 -13.71037 -13.15433 -12.78794 -12.70897 -12.59489 -12.27951 -12.07658 -11.96245 -11.82353 -11.64763 -11.33942 -11.01495 -10.89848 -10.28911 -10.05997 -9.65516 -9.57264 -9.23883 -9.16896 -8.61385 -7.99783 -7.88273 -6.59471 -4.19362 2.47232 2.94540 3.11832 3.17117 3.21327 3.42333 3.57271 4.01527 4.18014 4.33995 4.83478 4.90510 5.21585 5.31237 5.48988 5.54810 5.64995 5.67058 5.73899 5.76312 5.79962 5.82031 5.84519 5.85965 5.97044 6.13563 6.16236 6.20183 6.33438 6.78982 7.15026 7.19176 7.60636 7.69201 7.90545 8.06004 8.53672 8.78017 9.14337 9.45262 10.50707 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018972 B = 0.007103 C = 0.005958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.471797 B = 3941.238987 C = 4698.478005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.055 3.945 4 C 0.102 3.898 5 N -0.444 5.444 6 C -0.347 4.347 7 H 0.103 0.897 8 C 0.079 3.921 9 N -0.846 5.846 10 Si 0.871 3.129 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.261 1.261 14 C 0.457 3.543 15 O -0.586 6.586 16 C 0.103 3.897 17 N -0.431 5.431 18 C -0.050 4.050 19 C -0.039 4.039 20 N -0.503 5.503 21 C 0.218 3.782 22 C -0.067 4.067 23 H 0.032 0.968 24 H 0.081 0.919 25 H 0.030 0.970 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.276 0.724 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.819 3.924 -2.168 4.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C -0.023 4.023 4 C -0.021 4.021 5 N -0.164 5.164 6 C -0.474 4.474 7 H 0.120 0.880 8 C -0.130 4.130 9 N -0.479 5.479 10 Si 0.698 3.302 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.185 1.185 14 C 0.245 3.755 15 O -0.471 6.471 16 C -0.022 4.022 17 N -0.112 5.112 18 C -0.184 4.184 19 C -0.187 4.187 20 N -0.223 5.223 21 C -0.045 4.045 22 C -0.126 4.126 23 H 0.051 0.949 24 H 0.100 0.900 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.184 0.816 34 H 0.181 0.819 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.227 4.584 -2.192 5.227 hybrid contribution -0.672 -0.289 1.176 1.385 sum -1.899 4.294 -1.016 4.804 Atomic orbital electron populations 1.22665 0.82871 1.02158 0.98816 1.88202 1.17822 1.26606 1.95042 1.22840 0.94777 0.85218 0.99422 1.21759 0.92375 0.99201 0.88800 1.43596 1.57038 1.07485 1.08312 1.18942 1.43628 0.79744 1.05090 0.87990 1.25236 0.95613 0.95093 0.97098 1.69767 1.39489 1.08283 1.30394 0.87038 0.80678 0.80596 0.81868 1.19988 1.21170 1.18528 1.20349 0.82139 0.86577 0.86453 1.90628 1.57133 1.14597 1.84757 1.21564 1.05593 0.88231 0.86860 1.45040 1.12822 1.28348 1.24988 1.22562 0.96762 1.03282 0.95796 1.22079 0.92714 1.00322 1.03544 1.70161 1.17431 1.23645 1.11073 1.23087 0.91405 0.92232 0.97776 1.20143 0.90744 1.03817 0.97896 0.94895 0.90001 0.95099 0.93792 0.93314 0.90318 0.89851 0.91361 0.86289 0.86909 0.81572 0.81925 0.90539 0.89646 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.37 10.38 -35.23 -0.37 -7.73 16 3 C 0.06 1.06 6.26 37.16 0.23 1.29 16 4 C 0.10 2.15 4.47 -4.04 -0.02 2.13 16 5 N -0.44 -9.94 2.14 -114.81 -0.25 -10.19 16 6 C -0.35 -8.33 8.76 -14.93 -0.13 -8.47 16 7 H 0.10 2.54 7.24 -52.48 -0.38 2.16 16 8 C 0.08 1.96 5.28 -17.47 -0.09 1.86 16 9 N -0.85 -22.13 13.96 55.50 0.77 -21.35 16 10 Si 0.87 19.21 25.06 -169.99 -4.26 14.95 16 11 H -0.27 -5.91 6.67 56.52 0.38 -5.53 16 12 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 14 C 0.46 9.87 7.69 -10.98 -0.08 9.79 16 15 O -0.59 -14.04 16.05 5.55 0.09 -13.96 16 16 C 0.10 1.88 4.85 -5.19 -0.03 1.85 16 17 N -0.43 -7.91 2.25 -115.18 -0.26 -8.17 16 18 C -0.05 -0.85 11.58 -16.56 -0.19 -1.04 16 19 C -0.04 -0.66 11.87 -17.81 -0.21 -0.87 16 20 N -0.50 -9.69 11.25 -10.82 -0.12 -9.81 16 21 C 0.22 4.04 7.88 -155.41 -1.22 2.82 16 22 C -0.07 -1.03 10.04 36.01 0.36 -0.67 16 23 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.73 3.48 -51.93 -0.18 1.55 16 29 H 0.08 1.69 7.53 -51.92 -0.39 1.30 16 30 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.12 2.03 7.90 -51.93 -0.41 1.62 16 32 H 0.11 1.91 7.65 -51.93 -0.40 1.51 16 33 H 0.17 2.33 8.06 -52.48 -0.42 1.91 16 34 H 0.16 2.24 8.06 -52.49 -0.42 1.82 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.07 1.20 7.84 -51.93 -0.41 0.79 16 LS Contribution 314.72 15.07 4.74 4.74 Total: -1.00 -30.83 314.72 -5.05 -35.87 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -5.13 Total: 5.33 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -0.27 Total: 10.30 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.15 Total: -49.52 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.28 Total: -21.69 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.26 Total: 14.95 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.83 -5.05 -35.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556908604.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.708 kcal (2) G-P(sol) polarization free energy of solvation -30.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds