Wall clock time and date at job start Mon Mar 30 2020 01:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00359 * 2 1 4 4 C 1.52992 * 109.47525 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47273 * 64.99633 * 4 3 2 6 6 C 1.37098 * 119.99712 * 264.46947 * 5 4 3 7 7 H 1.08006 * 119.99415 * 138.26750 * 6 5 4 8 8 C 1.38945 * 120.00431 * 318.26908 * 6 5 4 9 9 N 1.31409 * 120.00017 * 341.88324 * 8 6 5 10 10 Si 1.86798 * 119.99991 * 161.88749 * 8 6 5 11 11 H 1.48508 * 109.47196 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47370 * 120.00075 * 10 8 6 13 13 H 1.48505 * 109.47016 * 240.00117 * 10 8 6 14 14 C 1.34768 * 119.99690 * 84.47119 * 5 4 3 15 15 O 1.21295 * 120.00274 * 0.02562 * 14 5 4 16 16 C 1.50703 * 119.99948 * 179.97438 * 14 5 4 17 17 N 1.46495 * 109.47477 * 180.02562 * 16 14 5 18 18 C 1.34950 * 126.03776 * 125.31326 * 17 16 14 19 19 C 1.35321 * 107.74369 * 180.14854 * 18 17 16 20 20 C 1.50702 * 126.03549 * 179.87068 * 19 18 17 21 21 C 1.39865 * 107.92151 * 359.61079 * 19 18 17 22 22 N 1.30841 * 108.20204 * 0.23794 * 21 19 18 23 23 H 1.09003 * 109.47050 * 300.00184 * 1 2 3 24 24 H 1.09000 * 109.47231 * 60.00460 * 1 2 3 25 25 H 1.08998 * 109.47354 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47251 * 59.99380 * 3 2 1 27 27 H 1.09004 * 109.47019 * 300.00145 * 3 2 1 28 28 H 1.09000 * 109.47175 * 304.99444 * 4 3 2 29 29 H 1.08998 * 109.47557 * 185.00185 * 4 3 2 30 30 H 0.96998 * 120.00248 * 179.97438 * 9 8 6 31 31 H 1.09007 * 109.46688 * 60.00206 * 16 14 5 32 32 H 1.09003 * 109.47421 * 300.00446 * 16 14 5 33 33 H 1.08001 * 126.12719 * 359.97438 * 18 17 16 34 34 H 1.08995 * 109.47169 * 269.71339 * 20 19 18 35 35 H 1.09001 * 109.46560 * 149.71766 * 20 19 18 36 36 H 1.08999 * 109.47279 * 29.71867 * 20 19 18 37 37 H 1.08007 * 125.89915 * 180.21997 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.2072 -0.7867 -1.3021 7 1 3.8794 -1.3583 -2.1578 8 6 4.8624 -1.4200 -0.2532 9 7 5.5676 -0.7148 0.6025 10 14 4.7409 -3.2739 -0.0594 11 1 3.8932 -3.8306 -1.1444 12 1 6.0990 -3.8698 -0.1366 13 1 4.1334 -3.5953 1.2570 14 6 4.1561 1.3204 -2.3516 15 8 3.9526 2.5153 -2.3061 16 6 4.6105 0.6819 -3.6389 17 7 4.7302 1.7082 -4.6774 18 6 5.8274 1.9607 -5.4214 19 6 5.5315 2.9812 -6.2594 20 6 6.4641 3.5969 -7.2705 21 6 4.2054 3.3595 -6.0256 22 7 3.7241 2.5970 -5.0775 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.8508 0.5685 0.8428 29 1 3.9785 2.1764 0.0902 30 1 6.0248 -1.1568 1.3349 31 1 3.8821 -0.0671 -3.9499 32 1 5.5789 0.2055 -3.4861 33 1 6.7731 1.4432 -5.3573 34 1 7.0066 4.4220 -6.8091 35 1 5.8873 3.9695 -8.1170 36 1 7.1727 2.8445 -7.6167 37 1 3.6712 4.1454 -6.5388 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625826039.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:26 Heat of formation + Delta-G solvation = -14.083415 kcal Electronic energy + Delta-G solvation = -20707.901384 eV Core-core repulsion = 17487.046658 eV Total energy + Delta-G solvation = -3220.854726 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.06203 -40.44436 -38.58444 -36.63027 -34.46427 -33.57061 -32.43053 -31.26494 -29.04589 -27.31129 -26.73433 -26.11952 -23.85718 -22.07712 -21.23595 -20.86539 -18.88148 -18.15109 -17.48405 -17.24209 -16.85853 -16.26791 -16.22820 -15.99030 -15.59622 -15.27076 -14.84227 -14.36798 -14.14611 -13.85513 -13.67970 -13.48661 -13.38010 -13.05973 -12.91597 -12.77538 -12.62113 -12.57577 -12.49306 -12.03929 -11.83424 -11.32505 -11.08008 -10.69157 -10.56409 -10.13107 -9.46180 -9.12153 -8.29529 -6.08604 1.08198 1.43019 1.52130 1.62561 1.66619 1.94556 2.00872 2.33897 2.83798 2.96636 3.14712 3.81081 4.04449 4.15540 4.20707 4.30118 4.33382 4.43286 4.48916 4.55891 4.56218 4.57471 4.69773 4.75063 4.82951 5.02984 5.07100 5.26165 5.31219 5.38887 5.47899 5.88208 5.98301 6.20973 6.35054 6.40352 6.92178 7.14105 7.52298 7.96674 8.75208 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.019244 B = 0.005960 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.658856 B = 4697.234868 C = 5571.877343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.064 3.936 4 C 0.123 3.877 5 N -0.435 5.435 6 C -0.344 4.344 7 H 0.094 0.906 8 C 0.015 3.985 9 N -0.893 5.893 10 Si 0.980 3.020 11 H -0.259 1.259 12 H -0.277 1.277 13 H -0.284 1.284 14 C 0.449 3.551 15 O -0.617 6.617 16 C 0.142 3.858 17 N -0.365 5.365 18 C 0.041 3.959 19 C -0.254 4.254 20 C -0.061 4.061 21 C 0.025 3.975 22 N -0.321 5.321 23 H 0.052 0.948 24 H 0.036 0.964 25 H 0.097 0.903 26 H 0.066 0.934 27 H 0.027 0.973 28 H 0.091 0.909 29 H 0.053 0.947 30 H 0.272 0.728 31 H 0.107 0.893 32 H 0.138 0.862 33 H 0.200 0.800 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.985 0.356 -7.978 8.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C -0.013 4.013 4 C -0.001 4.001 5 N -0.153 5.153 6 C -0.472 4.472 7 H 0.111 0.889 8 C -0.189 4.189 9 N -0.530 5.530 10 Si 0.805 3.195 11 H -0.182 1.182 12 H -0.203 1.203 13 H -0.210 1.210 14 C 0.237 3.763 15 O -0.504 6.504 16 C 0.017 3.983 17 N -0.147 5.147 18 C -0.104 4.104 19 C -0.265 4.265 20 C -0.119 4.119 21 C -0.161 4.161 22 N -0.142 5.142 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.116 0.884 26 H 0.084 0.916 27 H 0.045 0.955 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.125 0.875 32 H 0.155 0.845 33 H 0.217 0.783 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.897 0.341 -6.918 7.181 hybrid contribution 0.331 -0.292 0.259 0.512 sum -1.566 0.049 -6.658 6.840 Atomic orbital electron populations 1.22896 0.80577 1.03498 1.00154 1.88038 1.20508 1.27583 1.95302 1.22790 0.94580 0.84685 0.99267 1.21259 0.91188 0.97483 0.90127 1.43430 1.56667 1.07611 1.07623 1.19586 1.37101 0.82075 1.08411 0.88866 1.26110 0.92867 1.03840 0.96049 1.70024 1.28171 1.38504 1.16304 0.85082 0.77969 0.78041 0.78455 1.18245 1.20279 1.21038 1.20988 0.81423 0.86531 0.87325 1.90566 1.57448 1.16389 1.85995 1.21285 1.05870 0.87341 0.83781 1.48271 1.09617 1.27889 1.28915 1.22971 0.93293 0.99988 0.94189 1.20534 0.96758 1.02646 1.06581 1.20047 0.96694 0.99835 0.95332 1.24312 0.95621 1.00018 0.96122 1.77371 1.15123 1.05685 1.16007 0.92940 0.94569 0.88441 0.91572 0.95498 0.89140 0.92849 0.91870 0.87492 0.84472 0.78340 0.92035 0.90735 0.90839 0.78167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.77 11.01 113.37 1.25 2.02 16 2 O -0.40 -16.68 10.44 -148.98 -1.56 -18.24 16 3 C 0.06 2.75 6.24 71.98 0.45 3.20 16 4 C 0.12 6.05 5.26 86.38 0.45 6.51 16 5 N -0.43 -21.90 2.45 -635.55 -1.56 -23.46 16 6 C -0.34 -16.88 8.29 84.04 0.70 -16.18 16 7 H 0.09 4.33 7.21 -2.91 -0.02 4.31 16 8 C 0.02 0.73 4.95 84.93 0.42 1.15 16 9 N -0.89 -46.47 11.66 21.66 0.25 -46.22 16 10 Si 0.98 38.96 29.59 68.60 2.03 40.99 16 11 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 12 H -0.28 -10.68 7.11 99.48 0.71 -9.98 16 13 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 14 C 0.45 22.39 7.62 87.66 0.67 23.06 16 15 O -0.62 -34.56 15.38 -3.08 -0.05 -34.61 16 16 C 0.14 5.72 5.72 85.63 0.49 6.21 16 17 N -0.36 -14.44 3.40 -351.78 -1.20 -15.64 16 18 C 0.04 1.29 11.36 83.54 0.95 2.24 16 19 C -0.25 -7.42 6.10 -20.14 -0.12 -7.54 16 20 C -0.06 -1.20 10.37 71.24 0.74 -0.46 16 21 C 0.03 0.85 11.96 85.23 1.02 1.87 16 22 N -0.32 -13.59 11.64 -57.02 -0.66 -14.26 16 23 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.09 4.71 5.81 -2.39 -0.01 4.70 16 29 H 0.05 2.71 7.59 -2.39 -0.02 2.70 16 30 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 31 H 0.11 4.08 7.70 -2.38 -0.02 4.06 16 32 H 0.14 4.93 8.02 -2.39 -0.02 4.91 16 33 H 0.20 4.70 8.06 -2.91 -0.02 4.67 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.20 5.17 8.06 -2.91 -0.02 5.15 16 Total: -1.00 -69.45 320.67 5.33 -64.12 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 1.06 Total: 25.23 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: 7.01 Total: 22.08 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -3.17 Total: -99.58 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -1.60 Total: -52.84 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -69.45 5.33 -64.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625826039.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.037 kcal (2) G-P(sol) polarization free energy of solvation -69.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds