Wall clock time and date at job start Mon Mar 30 2020 01:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30013 * 127.33065 * 2 1 4 4 O 1.20661 * 112.29570 * 179.97438 * 3 2 1 5 5 C 1.33493 * 113.15824 * 0.02562 * 4 3 2 6 6 C 1.37360 * 106.34237 * 359.73602 * 5 4 3 7 7 C 1.47394 * 128.56528 * 180.23787 * 6 5 4 8 8 O 1.21608 * 119.99962 * 180.17230 * 7 6 5 9 9 N 1.34775 * 119.99948 * 0.16553 * 7 6 5 10 10 C 1.46507 * 119.99916 * 180.02562 * 9 7 6 11 11 C 1.52991 * 109.47160 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.47506 * 304.99848 * 11 10 9 13 13 C 1.52996 * 109.47352 * 65.00035 * 11 10 9 14 14 C 1.53005 * 109.47468 * 185.00046 * 11 10 9 15 15 N 1.46493 * 109.47589 * 174.99997 * 14 11 10 16 16 C 1.36935 * 120.00303 * 179.97438 * 15 14 11 17 17 H 1.08003 * 119.99916 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00214 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99970 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99975 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47003 * 60.00340 * 20 18 16 22 22 H 1.48497 * 109.47193 * 179.97438 * 20 18 16 23 23 H 1.48491 * 109.47166 * 300.00346 * 20 18 16 24 24 H 1.09001 * 109.46953 * 90.02549 * 1 2 3 25 25 H 1.09000 * 109.47318 * 210.02147 * 1 2 3 26 26 H 1.09000 * 109.47161 * 330.02777 * 1 2 3 27 27 H 1.08001 * 126.82751 * 180.02562 * 5 4 3 28 28 H 0.96998 * 120.00598 * 0.02562 * 9 7 6 29 29 H 1.08998 * 109.47204 * 300.00369 * 10 9 7 30 30 H 1.09004 * 109.46967 * 59.99874 * 10 9 7 31 31 H 1.08997 * 109.47697 * 180.02562 * 13 11 10 32 32 H 1.09010 * 109.47170 * 299.99883 * 13 11 10 33 33 H 1.09000 * 109.47358 * 59.99683 * 13 11 10 34 34 H 1.09003 * 109.46304 * 295.00053 * 14 11 10 35 35 H 1.08998 * 109.46826 * 54.99799 * 14 11 10 36 36 H 0.97006 * 119.99612 * 0.02562 * 15 14 11 37 37 H 0.96995 * 120.00241 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6494 -0.6007 0.0004 6 6 2.3992 -1.1696 0.0058 7 6 2.0401 -2.5991 0.0127 8 8 0.8706 -2.9323 0.0137 9 7 3.0080 -3.5370 0.0178 10 6 2.6511 -4.9579 0.0241 11 6 3.9258 -5.8039 0.0284 12 1 4.5548 -5.5176 -0.8146 13 6 4.6875 -5.5721 1.3349 14 6 3.5563 -7.2839 -0.0907 15 7 4.7776 -8.0845 -0.2068 16 6 4.6950 -9.4462 -0.3252 17 1 3.7294 -9.9299 -0.3335 18 6 5.8523 -10.2047 -0.4357 19 7 7.0290 -9.6152 -0.4262 20 14 5.7396 -12.0623 -0.5980 21 1 4.9671 -12.4065 -1.8187 22 1 7.1062 -12.6341 -0.7001 23 1 5.0557 -12.6228 0.5950 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5134 27 1 4.5967 -1.1195 0.0011 28 1 3.9409 -3.2713 0.0173 29 1 2.0635 -5.1810 0.9147 30 1 2.0649 -5.1893 -0.8652 31 1 5.5959 -6.1744 1.3378 32 1 4.9509 -4.5177 1.4198 33 1 4.0586 -5.8584 2.1778 34 1 3.0024 -7.5924 0.7959 35 1 2.9381 -7.4338 -0.9758 36 1 5.6449 -7.6500 -0.1990 37 1 7.8377 -10.1451 -0.5038 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714429060.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:36 Heat of formation + Delta-G solvation = 23.393316 kcal Electronic energy + Delta-G solvation = -19545.165525 eV Core-core repulsion = 16325.935912 eV Total energy + Delta-G solvation = -3219.229613 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.21774 -39.75665 -36.92998 -34.76150 -34.50142 -32.94107 -32.00410 -30.07748 -29.00333 -26.83292 -25.70397 -24.27592 -22.42315 -21.63472 -20.72285 -20.03842 -18.48456 -18.03149 -17.17094 -16.62306 -16.19874 -15.53147 -15.05072 -14.49426 -14.33894 -13.95289 -13.64863 -13.55177 -13.38608 -13.10415 -12.74399 -12.69944 -12.39205 -12.11382 -11.61757 -11.11458 -10.95325 -10.75845 -10.64070 -10.51900 -10.28566 -10.21091 -10.08837 -10.04622 -9.71034 -9.18558 -8.90446 -6.96081 -5.80183 -3.08767 0.74222 1.49489 2.58540 3.00093 3.02680 3.42653 3.47093 3.47991 3.73556 3.97739 4.52404 4.56211 4.66139 4.94917 5.03306 5.13579 5.27463 5.28944 5.31906 5.43861 5.54480 5.72520 5.85578 5.88917 5.91355 6.03287 6.15546 6.30214 6.36213 6.59316 6.71368 6.80688 7.27606 7.67197 7.87210 7.98097 8.39013 9.50297 10.06983 10.41658 11.42763 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.048095 B = 0.002967 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.047256 B = 9435.307899 C = 9863.119002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.070 3.930 3 N -0.361 5.361 4 O 0.097 5.903 5 C -0.005 4.005 6 C -0.252 4.252 7 C 0.592 3.408 8 O -0.529 6.529 9 N -0.717 5.717 10 C 0.127 3.873 11 C -0.111 4.111 12 H 0.077 0.923 13 C -0.142 4.142 14 C 0.161 3.839 15 N -0.731 5.731 16 C -0.240 4.240 17 H 0.070 0.930 18 C -0.014 4.014 19 N -0.935 5.935 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.227 0.773 28 H 0.399 0.601 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.054 0.946 34 H 0.023 0.977 35 H 0.021 0.979 36 H 0.384 0.616 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.012 19.578 1.676 20.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 N -0.069 5.069 4 O 0.038 5.962 5 C -0.088 4.088 6 C -0.260 4.260 7 C 0.378 3.622 8 O -0.407 6.407 9 N -0.368 5.368 10 C 0.004 3.996 11 C -0.130 4.130 12 H 0.096 0.904 13 C -0.199 4.199 14 C 0.032 3.968 15 N -0.375 5.375 16 C -0.372 4.372 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.584 5.584 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 H 0.103 0.897 25 H 0.115 0.885 26 H 0.096 0.904 27 H 0.243 0.757 28 H 0.233 0.767 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.041 0.959 35 H 0.039 0.961 36 H 0.218 0.782 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.092 20.457 1.666 22.062 hybrid contribution 0.879 -1.689 -0.121 1.908 sum -7.213 18.767 1.545 20.165 Atomic orbital electron populations 1.20286 0.84811 1.04445 1.03998 1.24898 0.99038 0.86286 0.99082 1.73692 0.89246 1.23586 1.20389 1.84577 1.21586 1.23019 1.67039 1.26467 1.00366 0.84114 0.97832 1.22419 0.92860 0.95779 1.14922 1.16816 0.85612 0.82986 0.76807 1.90799 1.18197 1.81912 1.49788 1.45890 1.09091 1.06968 1.74840 1.21488 0.97647 0.77674 1.02771 1.21567 0.95365 0.96859 0.99227 0.90436 1.21802 1.01481 1.00031 0.96634 1.20570 0.90820 0.87273 0.98099 1.42321 1.02765 1.03711 1.88738 1.19192 0.92709 0.83035 1.42222 0.91186 1.24733 0.95247 0.98049 1.02912 1.69638 0.96670 1.34553 1.57497 0.86252 0.76474 0.85426 0.77949 1.21249 1.21685 1.21240 0.89709 0.88495 0.90438 0.75690 0.76665 0.90964 0.90970 0.91037 0.94004 0.92713 0.95947 0.96072 0.78209 0.93448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.15 36.01 0.37 -0.35 16 2 C 0.07 0.76 7.58 -79.76 -0.60 0.15 16 3 N -0.36 -4.01 12.01 34.78 0.42 -3.59 16 4 O 0.10 0.89 11.06 18.65 0.21 1.10 16 5 C -0.01 -0.04 11.85 30.41 0.36 0.32 16 6 C -0.25 -2.58 6.47 -102.90 -0.67 -3.24 16 7 C 0.59 7.16 7.81 -12.53 -0.10 7.06 16 8 O -0.53 -8.16 15.69 5.27 0.08 -8.08 16 9 N -0.72 -7.46 5.28 -61.39 -0.32 -7.78 16 10 C 0.13 1.60 5.06 -4.04 -0.02 1.58 16 11 C -0.11 -1.57 2.46 -90.62 -0.22 -1.80 16 12 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 13 C -0.14 -1.92 8.94 37.16 0.33 -1.59 16 14 C 0.16 3.05 5.65 -4.04 -0.02 3.02 16 15 N -0.73 -17.78 5.33 -59.91 -0.32 -18.10 16 16 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 17 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 20 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.10 0.97 7.10 -51.93 -0.37 0.60 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.23 0.54 7.68 -52.49 -0.40 0.13 16 28 H 0.40 3.02 6.84 -40.82 -0.28 2.74 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.16 7.18 -51.93 -0.37 0.78 16 32 H 0.04 0.43 7.18 -51.92 -0.37 0.06 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.38 9.69 6.85 -40.82 -0.28 9.41 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 318.88 15.07 4.81 4.81 Total: -1.00 -33.28 318.88 -5.26 -38.53 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -5.00 Total: 5.05 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -0.82 Total: -2.08 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.50 Total: -56.45 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: 0.29 Total: -6.98 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.28 -5.26 -38.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714429060.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.928 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds