Wall clock time and date at job start Mon Mar 30 2020 01:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47165 * 2 1 4 4 C 1.35315 * 126.66220 * 90.33510 * 3 2 1 5 5 C 1.42280 * 103.91938 * 180.10585 * 4 3 2 6 6 C 1.48326 * 126.93813 * 179.85414 * 5 4 3 7 7 O 1.21500 * 120.00355 * 353.62985 * 6 5 4 8 8 N 1.34771 * 120.00451 * 173.35290 * 6 5 4 9 9 C 1.46504 * 119.99534 * 3.72713 * 8 6 5 10 10 C 1.46496 * 120.00477 * 183.73393 * 8 6 5 11 11 C 1.52996 * 109.47457 * 89.99853 * 10 8 6 12 12 N 1.46505 * 109.47356 * 180.02562 * 11 10 8 13 13 C 1.36935 * 119.99893 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00336 * 0.02562 * 13 12 11 15 15 C 1.38814 * 119.99528 * 180.02562 * 13 12 11 16 16 N 1.31624 * 120.00280 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99738 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47433 * 59.99591 * 17 15 13 19 19 H 1.48498 * 109.46787 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46680 * 299.99473 * 17 15 13 21 21 N 1.30981 * 106.11884 * 359.58942 * 5 4 3 22 22 O 1.20894 * 111.44621 * 0.26278 * 21 5 4 23 23 H 1.09005 * 109.46663 * 299.99610 * 1 2 3 24 24 H 1.09000 * 109.46980 * 59.99437 * 1 2 3 25 25 H 1.08998 * 109.47326 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46663 * 240.00390 * 2 1 3 27 27 H 1.09000 * 109.46980 * 120.00563 * 2 1 3 28 28 H 1.07999 * 128.04695 * 359.96180 * 4 3 2 29 29 H 1.09003 * 109.47234 * 84.25642 * 9 8 6 30 30 H 1.08999 * 109.47183 * 204.25406 * 9 8 6 31 31 H 1.08998 * 109.47432 * 324.25942 * 9 8 6 32 32 H 1.09011 * 109.47113 * 209.99962 * 10 8 6 33 33 H 1.08995 * 109.46870 * 329.99219 * 10 8 6 34 34 H 1.08998 * 109.47307 * 299.99934 * 11 10 8 35 35 H 1.09003 * 109.47429 * 60.00099 * 11 10 8 36 36 H 0.97001 * 119.99918 * 359.97438 * 12 11 10 37 37 H 0.96995 * 119.99683 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3077 2.1804 1.0854 5 6 2.7396 3.4195 0.5354 6 6 3.1667 4.6265 1.2842 7 8 3.0607 4.6601 2.4941 8 7 3.6776 5.6840 0.6231 9 6 3.7357 5.6743 -0.8407 10 6 4.1750 6.8431 1.3682 11 6 5.6594 6.6482 1.6835 12 7 6.1566 7.8071 2.4292 13 6 7.4669 7.8564 2.8239 14 1 8.1339 7.0413 2.5853 15 6 7.9378 8.9543 3.5309 16 7 7.1248 9.9476 3.8223 17 14 9.7255 9.0220 4.0688 18 1 10.6047 8.9608 2.8737 19 1 9.9739 10.2890 4.8025 20 1 10.0185 7.8698 4.9585 21 7 2.6895 3.2770 -0.7657 22 8 2.2996 2.1752 -1.0750 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 2.2179 1.9100 2.1272 29 1 2.7779 6.0025 -1.2446 30 1 4.5225 6.3492 -1.1777 31 1 3.9498 4.6639 -1.1892 32 1 4.0464 7.7437 0.7675 33 1 3.6161 6.9441 2.2985 34 1 5.7880 5.7478 2.2842 35 1 6.2183 6.5472 0.7532 36 1 5.5576 8.5394 2.6433 37 1 7.4540 10.7149 4.3159 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714787069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:17 Heat of formation + Delta-G solvation = 46.903672 kcal Electronic energy + Delta-G solvation = -19778.137637 eV Core-core repulsion = 16559.927509 eV Total energy + Delta-G solvation = -3218.210127 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.26390 -39.71087 -36.04345 -35.24307 -34.55593 -33.81638 -31.38093 -30.45945 -28.33605 -26.73443 -24.95552 -24.46440 -23.31677 -22.36450 -21.28584 -19.15879 -18.01868 -17.54237 -17.15779 -16.88225 -15.88612 -15.27610 -14.99658 -14.67978 -14.47553 -13.80968 -13.73197 -13.44770 -13.28118 -13.10318 -12.92755 -12.81239 -12.61118 -12.15950 -11.65513 -11.35710 -11.19218 -10.98909 -10.88356 -10.66442 -10.57728 -10.19274 -10.09547 -9.72441 -9.68022 -8.85814 -8.57366 -6.92566 -5.74561 -3.04110 0.96440 1.49610 2.65312 2.88518 3.16155 3.46504 3.50230 3.51857 3.79329 4.14540 4.56189 4.62794 4.71126 4.75370 4.83503 5.01095 5.22454 5.26115 5.35473 5.46208 5.50517 5.51826 5.62823 5.67093 5.73936 5.80750 5.89831 6.02132 6.10638 6.51164 6.71858 6.87512 7.34598 7.71286 7.80209 8.11128 8.43780 9.54666 10.10091 10.45671 11.48310 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.041554 B = 0.003239 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.661505 B = 8643.673680 C = 8800.303219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.042 4.042 3 C -0.033 4.033 4 C -0.181 4.181 5 C -0.014 4.014 6 C 0.590 3.410 7 O -0.517 6.517 8 N -0.594 5.594 9 C 0.072 3.928 10 C 0.107 3.893 11 C 0.143 3.857 12 N -0.730 5.730 13 C -0.239 4.239 14 H 0.070 0.930 15 C -0.014 4.014 16 N -0.934 5.934 17 Si 0.910 3.090 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.285 1.285 21 N -0.329 5.329 22 O 0.113 5.887 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.180 0.820 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.023 0.977 35 H 0.020 0.980 36 H 0.384 0.616 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.295 -19.655 -11.689 26.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.080 4.080 3 C -0.096 4.096 4 C -0.203 4.203 5 C -0.173 4.173 6 C 0.375 3.625 7 O -0.391 6.391 8 N -0.327 5.327 9 C -0.072 4.072 10 C -0.015 4.015 11 C 0.014 3.986 12 N -0.375 5.375 13 C -0.371 4.371 14 H 0.088 0.912 15 C -0.210 4.210 16 N -0.582 5.582 17 Si 0.741 3.259 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 N -0.033 5.033 22 O 0.041 5.959 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.109 0.891 27 H 0.118 0.882 28 H 0.197 0.803 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.041 0.959 35 H 0.037 0.963 36 H 0.218 0.782 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.872 -18.784 -12.000 26.254 hybrid contribution 0.772 0.100 1.046 1.304 sum -13.100 -18.684 -10.954 25.312 Atomic orbital electron populations 1.21813 0.93369 1.02821 1.03007 1.20150 0.96719 0.86128 1.05004 1.24490 1.02446 0.97149 0.85515 1.22445 1.04685 0.91622 1.01560 1.23565 1.05740 0.97987 0.90036 1.16981 0.78218 0.81082 0.86247 1.90831 1.54927 1.80644 1.12669 1.47675 1.59855 1.17423 1.07752 1.22135 1.02173 1.04189 0.78657 1.21831 0.96496 0.85897 0.97303 1.20909 0.90538 0.92096 0.95054 1.42191 1.09793 1.19384 1.66088 1.19163 0.86496 1.02617 1.28779 0.91230 1.24757 0.98144 0.96867 1.01183 1.69654 1.34423 1.09049 1.45103 0.86224 0.84590 0.76810 0.78309 1.21243 1.21612 1.21214 1.74328 1.14346 0.99058 1.15548 1.84779 1.59904 1.17614 1.33649 0.91928 0.91988 0.91154 0.89117 0.88246 0.80267 0.92438 0.90349 0.89528 0.89914 0.89285 0.95945 0.96258 0.78197 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.89 37.16 0.37 -0.28 16 2 C -0.04 -0.20 6.50 -27.88 -0.18 -0.38 16 3 C -0.03 -0.29 6.73 -35.35 -0.24 -0.53 16 4 C -0.18 -2.02 10.93 -39.07 -0.43 -2.44 16 5 C -0.01 -0.20 6.87 -82.53 -0.57 -0.77 16 6 C 0.59 10.13 7.70 -12.11 -0.09 10.04 16 7 O -0.52 -10.52 16.52 5.37 0.09 -10.43 16 8 N -0.59 -9.63 2.87 -182.51 -0.52 -10.16 16 9 C 0.07 0.92 9.67 59.85 0.58 1.50 16 10 C 0.11 1.95 5.52 -4.05 -0.02 1.92 16 11 C 0.14 3.15 6.58 -4.04 -0.03 3.12 16 12 N -0.73 -19.54 5.60 -59.91 -0.34 -19.88 16 13 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 14 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 15 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 16 N -0.93 -28.96 13.06 55.49 0.72 -28.24 16 17 Si 0.91 23.02 29.55 -169.99 -5.02 17.99 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 N -0.33 -4.16 8.70 33.29 0.29 -3.87 16 22 O 0.11 1.19 11.18 17.24 0.19 1.38 16 23 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 24 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.18 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.94 8.03 -51.93 -0.42 0.52 16 31 H 0.09 1.10 5.35 -51.93 -0.28 0.82 16 32 H 0.08 1.37 8.07 -51.92 -0.42 0.95 16 33 H 0.09 1.76 7.38 -51.93 -0.38 1.37 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.38 10.62 7.67 -40.82 -0.31 10.31 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 320.51 15.07 4.83 4.83 Total: -1.00 -34.52 320.51 -5.77 -40.29 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.16 Total: 3.55 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -0.86 Total: 4.52 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 0.15 Total: -62.14 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.28 Total: -9.04 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.52 -5.77 -40.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714787069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.195 kcal (2) G-P(sol) polarization free energy of solvation -34.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds