Wall clock time and date at job start Mon Mar 30 2020 01:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29931 * 125.38067 * 2 1 4 4 C 1.36064 * 108.47671 * 180.16554 * 3 2 1 5 5 C 1.47422 * 126.44505 * 179.82399 * 4 3 2 6 6 O 1.21621 * 119.99532 * 179.69427 * 5 4 3 7 7 N 1.34779 * 120.00430 * 359.69941 * 5 4 3 8 8 C 1.46501 * 120.00129 * 180.27193 * 7 5 4 9 9 H 1.09007 * 109.46744 * 34.72184 * 8 7 5 10 10 C 1.52995 * 109.47304 * 274.72377 * 8 7 5 11 11 C 1.52998 * 109.46956 * 154.71834 * 8 7 5 12 12 N 1.46503 * 109.47433 * 305.00424 * 11 8 7 13 13 C 1.46500 * 119.99324 * 269.99801 * 12 11 8 14 14 C 1.36925 * 119.99931 * 89.99948 * 12 11 8 15 15 H 1.07998 * 120.00640 * 22.33774 * 14 12 11 16 16 C 1.38819 * 119.99555 * 202.33643 * 14 12 11 17 17 N 1.31614 * 120.00008 * 11.37297 * 16 14 12 18 18 Si 1.86809 * 119.99862 * 191.36579 * 16 14 12 19 19 H 1.48500 * 109.46855 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46651 * 119.99954 * 18 16 14 21 21 H 1.48492 * 109.47081 * 240.00465 * 18 16 14 22 22 C 1.36088 * 107.10343 * 359.56793 * 4 3 2 23 23 O 1.34051 * 125.37490 * 179.68606 * 2 1 3 24 24 H 1.08997 * 109.47118 * 180.34230 * 1 2 3 25 25 H 1.08996 * 109.46547 * 300.34032 * 1 2 3 26 26 H 1.08999 * 109.47235 * 60.34062 * 1 2 3 27 27 H 0.96998 * 119.99827 * 359.97438 * 7 5 4 28 28 H 1.09001 * 109.47370 * 59.99510 * 10 8 7 29 29 H 1.08992 * 109.47094 * 179.97438 * 10 8 7 30 30 H 1.09007 * 109.46942 * 300.00154 * 10 8 7 31 31 H 1.08998 * 109.46748 * 65.00083 * 11 8 7 32 32 H 1.09000 * 109.47019 * 184.99771 * 11 8 7 33 33 H 1.09008 * 109.47234 * 94.22909 * 13 12 11 34 34 H 1.09005 * 109.46769 * 214.21990 * 13 12 11 35 35 H 1.08998 * 109.47863 * 334.22409 * 13 12 11 36 36 H 0.97003 * 119.99727 * 180.02562 * 17 16 14 37 37 H 1.08001 * 126.52376 * 180.27579 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2594 1.0594 0.0000 4 6 3.5612 0.6637 -0.0037 5 6 4.7440 1.5437 -0.0087 6 8 5.8605 1.0617 -0.0061 7 7 4.5879 2.8825 -0.0160 8 6 5.7633 3.7569 -0.0269 9 1 6.5562 3.2925 -0.6134 10 6 6.2504 3.9747 1.4070 11 6 5.3909 5.1040 -0.6493 12 7 4.8131 4.8853 -1.9777 13 6 5.6804 4.8571 -3.1580 14 6 3.4625 4.7073 -2.1160 15 1 2.7889 5.0720 -1.3546 16 6 2.9590 4.0580 -3.2349 17 7 3.7740 3.4194 -4.0474 18 14 1.1247 4.0904 -3.5871 19 1 0.4315 4.8698 -2.5301 20 1 0.8856 4.7263 -4.9076 21 1 0.5993 2.7017 -3.6038 22 6 3.5660 -0.6971 0.0038 23 8 2.2831 -1.0930 0.0060 24 1 -0.3633 -1.0276 0.0061 25 1 -0.3632 0.5191 0.8869 26 1 -0.3634 0.5085 -0.8930 27 1 3.6974 3.2669 -0.0184 28 1 6.5156 3.0149 1.8504 29 1 7.1251 4.6248 1.3987 30 1 5.4574 4.4390 1.9934 31 1 4.6622 5.6083 -0.0147 32 1 6.2842 5.7222 -0.7389 33 1 5.9568 3.8266 -3.3813 34 1 5.1495 5.2833 -4.0093 35 1 6.5802 5.4403 -2.9619 36 1 3.4222 2.9660 -4.8295 37 1 4.4361 -1.3368 0.0076 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716475731.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:29 Heat of formation + Delta-G solvation = -18.672235 kcal Electronic energy + Delta-G solvation = -21174.792951 eV Core-core repulsion = 17953.739239 eV Total energy + Delta-G solvation = -3221.053712 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.40332 -40.58253 -38.04465 -35.94239 -35.71298 -33.31678 -32.98914 -31.54377 -28.75509 -28.04081 -27.37771 -25.48396 -23.50945 -22.62708 -21.65637 -21.25181 -19.27681 -18.58829 -17.91608 -17.44140 -17.13042 -16.75739 -15.90672 -15.55476 -15.42850 -15.00485 -14.87551 -14.65440 -14.46810 -13.94456 -13.85902 -13.41002 -13.30449 -13.10792 -12.87599 -12.73941 -12.53841 -12.28237 -12.16175 -11.98509 -11.92688 -11.80428 -11.67935 -11.15135 -10.60650 -10.10858 -9.78567 -8.75922 -7.77895 -5.24195 0.10933 1.03462 1.44438 1.45766 1.55509 1.61215 2.20584 2.45936 2.53883 2.98296 3.39028 3.69595 3.82741 3.85477 4.15166 4.40899 4.43114 4.51850 4.54123 4.63085 4.73135 4.75287 4.83217 4.86400 4.90559 4.99323 5.15265 5.24222 5.33723 5.38652 5.65840 5.69471 5.74568 6.34907 6.43549 6.74864 7.18523 7.27382 7.90658 8.35144 9.25923 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.013388 B = 0.009606 C = 0.006418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.994358 B = 2914.213482 C = 4361.561294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.193 3.807 3 N -0.487 5.487 4 C -0.093 4.093 5 C 0.592 3.408 6 O -0.588 6.588 7 N -0.669 5.669 8 C 0.117 3.883 9 H 0.046 0.954 10 C -0.145 4.145 11 C 0.140 3.860 12 N -0.612 5.612 13 C 0.180 3.820 14 C -0.242 4.242 15 H 0.074 0.926 16 C -0.046 4.046 17 N -0.937 5.937 18 Si 0.954 3.046 19 H -0.259 1.259 20 H -0.299 1.299 21 H -0.298 1.298 22 C 0.013 3.987 23 O -0.195 6.195 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.095 0.905 27 H 0.409 0.591 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.080 0.920 33 H -0.009 1.009 34 H 0.019 0.981 35 H 0.031 0.969 36 H 0.240 0.760 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.228 -4.728 11.089 12.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.017 4.017 3 N -0.218 5.218 4 C -0.212 4.212 5 C 0.378 3.622 6 O -0.471 6.471 7 N -0.316 5.316 8 C 0.009 3.991 9 H 0.064 0.936 10 C -0.204 4.204 11 C 0.014 3.986 12 N -0.334 5.334 13 C 0.034 3.966 14 C -0.372 4.372 15 H 0.092 0.908 16 C -0.240 4.240 17 N -0.584 5.584 18 Si 0.784 3.216 19 H -0.183 1.183 20 H -0.226 1.226 21 H -0.226 1.226 22 C -0.061 4.061 23 O -0.081 6.081 24 H 0.137 0.863 25 H 0.136 0.864 26 H 0.114 0.886 27 H 0.245 0.755 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.009 0.991 34 H 0.038 0.962 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -3.729 -4.429 10.952 12.388 hybrid contribution -0.698 -0.791 -0.944 1.416 sum -4.427 -5.220 10.007 12.124 Atomic orbital electron populations 1.20584 0.77650 1.06913 1.06075 1.27333 0.98211 0.77711 0.98435 1.70750 1.01021 1.31386 1.18596 1.21872 0.92205 0.94035 1.13096 1.17036 0.86211 0.82890 0.76083 1.90694 1.25487 1.76183 1.54712 1.45653 1.11234 1.04553 1.70129 1.21883 0.86979 0.92998 0.97200 0.93560 1.22025 1.02207 1.01601 0.94563 1.21414 0.98438 0.92955 0.85820 1.44140 1.03958 1.83724 1.01617 1.20496 0.90981 0.96324 0.88751 1.19380 0.83092 1.29077 1.05620 0.90811 1.25623 1.00651 0.98152 0.99623 1.70278 1.34302 1.37711 1.16109 0.85375 0.82016 0.76747 0.77506 1.18323 1.22629 1.22559 1.25621 0.85607 0.95070 0.99806 1.84381 1.16387 1.37843 1.69532 0.86279 0.86385 0.88606 0.75482 0.94019 0.89403 0.91333 0.91648 0.90146 0.99116 0.96233 0.95088 0.95063 0.72992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.99 10.51 71.24 0.75 -0.24 16 2 C 0.19 5.71 8.30 88.39 0.73 6.44 16 3 N -0.49 -18.50 11.06 -293.03 -3.24 -21.74 16 4 C -0.09 -3.69 6.99 40.41 0.28 -3.40 16 5 C 0.59 26.26 7.78 86.66 0.67 26.93 16 6 O -0.59 -27.98 16.55 -4.10 -0.07 -28.05 16 7 N -0.67 -28.50 4.48 -445.79 -2.00 -30.50 16 8 C 0.12 4.50 2.88 44.99 0.13 4.63 16 9 H 0.05 2.08 7.57 -2.38 -0.02 2.06 16 10 C -0.15 -4.29 9.49 71.98 0.68 -3.61 16 11 C 0.14 5.35 5.36 86.38 0.46 5.81 16 12 N -0.61 -29.81 2.82 -726.93 -2.05 -31.86 16 13 C 0.18 9.06 9.01 127.77 1.15 10.21 16 14 C -0.24 -12.71 8.02 84.04 0.67 -12.04 16 15 H 0.07 3.74 7.84 -2.91 -0.02 3.72 16 16 C -0.05 -2.54 5.13 84.86 0.44 -2.10 16 17 N -0.94 -56.51 10.59 21.65 0.23 -56.28 16 18 Si 0.95 45.28 29.57 68.60 2.03 47.31 16 19 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 20 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 21 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 22 C 0.01 0.41 11.95 67.32 0.80 1.21 16 23 O -0.19 -5.60 10.73 0.37 0.00 -5.60 16 24 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.41 17.92 7.13 -92.71 -0.66 17.26 16 28 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.07 2.30 8.03 -2.39 -0.02 2.29 16 32 H 0.08 2.64 7.86 -2.39 -0.02 2.62 16 33 H -0.01 -0.55 7.42 -2.38 -0.02 -0.57 16 34 H 0.02 1.04 7.19 -2.38 -0.02 1.03 16 35 H 0.03 1.31 7.84 -2.39 -0.02 1.29 16 36 H 0.24 14.35 8.31 -92.71 -0.77 13.57 16 37 H 0.25 6.21 8.06 -2.91 -0.02 6.19 16 Total: -1.00 -73.52 318.64 2.10 -71.41 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.42 Total: 21.44 kcal Atomic # 6 Polarization: 27.07 SS G_CDS: 6.78 Total: 33.85 kcal Atomic # 7 Polarization: -133.32 SS G_CDS: -7.06 Total: -140.37 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.06 Total: -33.64 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -73.52 2.10 -71.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716475731.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.740 kcal (2) G-P(sol) polarization free energy of solvation -73.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds