Wall clock time and date at job start Mon Mar 30 2020 01:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30016 * 127.33226 * 2 1 4 4 O 1.20655 * 112.29865 * 179.97438 * 3 2 1 5 5 C 1.33497 * 113.15798 * 359.72017 * 4 3 2 6 6 C 1.37353 * 106.33974 * 0.44445 * 5 4 3 7 7 C 1.47405 * 128.56485 * 179.85540 * 6 5 4 8 8 O 1.21607 * 119.99728 * 179.67950 * 7 6 5 9 9 N 1.34773 * 119.99975 * 359.67854 * 7 6 5 10 10 C 1.46497 * 120.00304 * 179.97438 * 9 7 6 11 11 H 1.09007 * 109.46952 * 35.00450 * 10 9 7 12 12 C 1.53002 * 109.47433 * 275.00881 * 10 9 7 13 13 C 1.52999 * 109.47333 * 154.99921 * 10 9 7 14 14 H 1.09000 * 109.47486 * 295.00644 * 13 10 9 15 15 C 1.53006 * 109.46623 * 55.00472 * 13 10 9 16 16 N 1.46500 * 109.46944 * 175.00212 * 13 10 9 17 17 C 1.36939 * 119.99555 * 155.00323 * 16 13 10 18 18 H 1.07999 * 120.00498 * 0.02562 * 17 16 13 19 19 C 1.38813 * 119.99885 * 179.97438 * 17 16 13 20 20 N 1.31623 * 120.00026 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00060 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46870 * 60.00342 * 21 19 17 23 23 H 1.48498 * 109.46892 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47084 * 300.00260 * 21 19 17 25 25 H 1.09003 * 109.47255 * 270.04639 * 1 2 3 26 26 H 1.08998 * 109.47036 * 30.04119 * 1 2 3 27 27 H 1.08995 * 109.46901 * 150.04704 * 1 2 3 28 28 H 1.07997 * 126.83135 * 180.31051 * 5 4 3 29 29 H 0.97000 * 119.99883 * 0.02562 * 9 7 6 30 30 H 1.09006 * 109.46455 * 299.99230 * 12 10 9 31 31 H 1.08998 * 109.47381 * 59.98967 * 12 10 9 32 32 H 1.08993 * 109.47092 * 179.97438 * 12 10 9 33 33 H 1.09001 * 109.47002 * 179.97438 * 15 13 10 34 34 H 1.08993 * 109.46955 * 300.00075 * 15 13 10 35 35 H 1.09000 * 109.47050 * 59.99904 * 15 13 10 36 36 H 0.96998 * 120.00364 * 335.00076 * 16 13 10 37 37 H 0.96993 * 120.00204 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4607 0.7208 0.0005 5 6 3.6494 -0.6007 0.0069 6 6 2.3992 -1.1696 0.0007 7 6 2.0401 -2.5992 0.0009 8 8 0.8706 -2.9323 0.0006 9 7 3.0080 -3.5371 0.0014 10 6 2.6512 -4.9580 0.0022 11 1 1.7462 -5.1056 -0.5873 12 6 2.4048 -5.4212 1.4394 13 6 3.7949 -5.7714 -0.6070 14 1 3.9118 -5.5040 -1.6572 15 6 5.0929 -5.4679 0.1441 16 7 3.4901 -7.2002 -0.4979 17 6 4.0515 -8.0889 -1.3755 18 1 4.7192 -7.7367 -2.1478 19 6 3.7631 -9.4428 -1.2718 20 7 2.9497 -9.8722 -0.3303 21 14 4.5283 -10.6552 -2.4693 22 1 6.0079 -10.5939 -2.3579 23 1 4.0646 -12.0286 -2.1473 24 1 4.1213 -10.3067 -3.8543 25 1 -0.3634 0.0008 1.0277 26 1 -0.3633 0.8896 -0.5145 27 1 -0.3633 -0.8904 -0.5131 28 1 4.5966 -1.1194 0.0133 29 1 3.9409 -3.2713 0.0020 30 1 3.3099 -5.2736 2.0288 31 1 1.5901 -4.8417 1.8734 32 1 2.1390 -6.4782 1.4399 33 1 5.9077 -6.0478 -0.2896 34 1 5.3196 -4.4049 0.0629 35 1 4.9760 -5.7354 1.1943 36 1 2.8907 -7.5166 0.1960 37 1 2.7479 -10.8182 -0.2580 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717436683.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:41 Heat of formation + Delta-G solvation = 33.195050 kcal Electronic energy + Delta-G solvation = -20225.802295 eV Core-core repulsion = 17006.997717 eV Total energy + Delta-G solvation = -3218.804578 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.11454 -39.72901 -37.00226 -34.63143 -34.06803 -32.60415 -31.52805 -29.47086 -28.76068 -28.27599 -25.16698 -24.34970 -22.98931 -21.50776 -20.59608 -19.37464 -18.33936 -17.93181 -17.44114 -16.65865 -15.78422 -15.06336 -14.75279 -14.52048 -14.27038 -13.87899 -13.48154 -13.44837 -13.29089 -12.86369 -12.64061 -12.52026 -12.04993 -11.70838 -11.51990 -11.36063 -10.98692 -10.85834 -10.55198 -10.33686 -10.13147 -10.06246 -10.01763 -9.96796 -9.70001 -8.99107 -8.92225 -7.05786 -5.82553 -3.12599 0.86535 1.60061 2.70755 3.18375 3.19462 3.40842 3.45685 3.46474 3.84903 4.08895 4.54693 4.64372 4.82113 5.10230 5.27651 5.37943 5.39483 5.42595 5.53458 5.56470 5.59151 5.75343 5.97134 6.00403 6.07792 6.21551 6.32246 6.37707 6.55112 6.64724 6.82313 7.00477 7.51727 7.63915 7.97462 8.20291 8.35794 9.47113 10.01624 10.36337 11.39857 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038180 B = 0.003744 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.193173 B = 7477.331037 C = 7755.988216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.069 3.931 3 N -0.363 5.363 4 O 0.095 5.905 5 C -0.009 4.009 6 C -0.248 4.248 7 C 0.591 3.409 8 O -0.528 6.528 9 N -0.711 5.711 10 C 0.137 3.863 11 H 0.091 0.909 12 C -0.160 4.160 13 C 0.168 3.832 14 H 0.052 0.948 15 C -0.169 4.169 16 N -0.719 5.719 17 C -0.244 4.244 18 H 0.071 0.929 19 C -0.010 4.010 20 N -0.931 5.931 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.285 1.285 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.226 0.774 29 H 0.396 0.604 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.031 0.969 35 H 0.054 0.946 36 H 0.387 0.613 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.493 18.542 2.409 18.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 N -0.071 5.071 4 O 0.036 5.964 5 C -0.092 4.092 6 C -0.256 4.256 7 C 0.376 3.624 8 O -0.405 6.405 9 N -0.363 5.363 10 C 0.033 3.967 11 H 0.109 0.891 12 C -0.218 4.218 13 C 0.057 3.943 14 H 0.070 0.930 15 C -0.229 4.229 16 N -0.362 5.362 17 C -0.375 4.375 18 H 0.089 0.911 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.212 1.212 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.116 0.884 28 H 0.242 0.758 29 H 0.231 0.769 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.223 0.777 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.544 19.472 2.269 19.611 hybrid contribution 0.844 -1.599 -0.362 1.844 sum 1.389 17.873 1.907 18.028 Atomic orbital electron populations 1.20282 0.84842 1.04457 1.03944 1.24896 0.99026 0.86328 0.99086 1.73674 0.89267 1.23621 1.20506 1.84561 1.21586 1.23051 1.67176 1.26431 1.00379 0.84066 0.98286 1.22495 0.92777 0.95946 1.14340 1.16850 0.85811 0.82910 0.76836 1.90796 1.18198 1.81812 1.49733 1.46095 1.08890 1.06887 1.74458 1.21405 1.00089 0.77518 0.97719 0.89095 1.22150 1.01284 1.02561 0.95819 1.20362 0.90745 0.86211 0.96992 0.92968 1.22552 1.00688 0.97958 1.01722 1.42437 1.56359 0.99349 1.38083 1.19173 1.21985 0.87849 1.08494 0.91149 1.24745 0.99970 0.97016 0.98907 1.69643 1.39124 1.14513 1.34615 0.86259 0.78669 0.80577 0.80597 1.21253 1.21663 1.21211 0.89764 0.90517 0.88419 0.75791 0.76860 0.92473 0.93008 0.90319 0.92256 0.95047 0.92712 0.77733 0.93326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.15 36.01 0.37 -0.44 16 2 C 0.07 0.83 7.58 -79.77 -0.60 0.23 16 3 N -0.36 -4.35 12.01 34.78 0.42 -3.93 16 4 O 0.10 0.96 11.06 18.64 0.21 1.16 16 5 C -0.01 -0.08 11.85 30.41 0.36 0.28 16 6 C -0.25 -2.87 6.47 -102.89 -0.67 -3.54 16 7 C 0.59 8.27 7.78 -12.53 -0.10 8.17 16 8 O -0.53 -9.21 15.36 5.27 0.08 -9.13 16 9 N -0.71 -9.08 4.98 -54.89 -0.27 -9.36 16 10 C 0.14 2.22 2.62 -67.93 -0.18 2.04 16 11 H 0.09 1.71 7.58 -51.93 -0.39 1.31 16 12 C -0.16 -2.57 9.00 37.16 0.33 -2.23 16 13 C 0.17 3.04 2.93 -67.93 -0.20 2.84 16 14 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 15 C -0.17 -2.61 9.01 37.16 0.33 -2.28 16 16 N -0.72 -16.98 5.03 -53.42 -0.27 -17.25 16 17 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 18 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -27.36 13.06 55.49 0.72 -26.63 16 21 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.10 1.11 7.11 -51.93 -0.37 0.74 16 28 H 0.23 0.77 7.68 -52.49 -0.40 0.37 16 29 H 0.40 3.84 5.76 -40.82 -0.24 3.60 16 30 H 0.06 0.84 6.57 -51.93 -0.34 0.50 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.42 6.29 -51.93 -0.33 1.10 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.03 0.35 6.29 -51.93 -0.33 0.03 16 35 H 0.05 0.86 6.56 -51.93 -0.34 0.52 16 36 H 0.39 9.69 5.77 -40.82 -0.24 9.45 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 311.59 15.07 4.70 4.70 Total: -1.00 -32.12 311.59 -4.66 -36.78 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -4.63 Total: 8.80 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -0.60 Total: -1.93 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 0.60 Total: -57.17 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.29 Total: -7.97 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.12 -4.66 -36.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717436683.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.979 kcal (2) G-P(sol) polarization free energy of solvation -32.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds