Wall clock time and date at job start Mon Mar 30 2020 00:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34665 * 125.79995 * 2 1 4 4 H 0.96996 * 124.85191 * 0.02562 * 3 2 1 5 5 C 1.36451 * 110.29248 * 180.29842 * 3 2 1 6 6 C 1.34480 * 108.85719 * 359.74908 * 5 3 2 7 7 C 1.36769 * 125.80144 * 179.87243 * 2 1 3 8 8 C 1.47263 * 126.94007 * 359.97438 * 7 2 1 9 9 O 1.21622 * 119.99895 * 359.71244 * 8 7 2 10 10 N 1.34779 * 119.99789 * 179.71396 * 8 7 2 11 11 C 1.46494 * 119.99921 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47283 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47269 * 305.00317 * 12 11 10 14 14 O 1.42903 * 109.46459 * 65.00211 * 12 11 10 15 15 C 1.53001 * 109.47376 * 185.00021 * 12 11 10 16 16 N 1.46497 * 109.46900 * 180.02562 * 15 12 11 17 17 C 1.36940 * 119.99699 * 180.02562 * 16 15 12 18 18 H 1.08003 * 120.00008 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99902 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00041 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99798 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47344 * 90.00426 * 21 19 17 23 23 H 1.48507 * 109.46989 * 209.99999 * 21 19 17 24 24 H 1.48500 * 109.47285 * 330.00003 * 21 19 17 25 25 H 1.09007 * 109.47080 * 270.13469 * 1 2 3 26 26 H 1.09008 * 109.47142 * 30.13037 * 1 2 3 27 27 H 1.08999 * 109.47488 * 150.13369 * 1 2 3 28 28 H 1.07995 * 125.56492 * 179.76993 * 5 3 2 29 29 H 1.08005 * 126.83502 * 180.02562 * 6 5 3 30 30 H 0.96999 * 119.99691 * 0.02562 * 10 8 7 31 31 H 1.09005 * 109.47040 * 60.00167 * 11 10 8 32 32 H 1.08999 * 109.47079 * 299.99869 * 11 10 8 33 33 H 0.96700 * 114.00311 * 60.00313 * 14 12 11 34 34 H 1.08999 * 109.47164 * 300.00361 * 15 12 11 35 35 H 1.08997 * 109.47124 * 60.00063 * 15 12 11 36 36 H 0.96996 * 120.00310 * 359.97438 * 16 15 12 37 37 H 0.97001 * 119.99921 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9734 2.0074 0.0004 5 6 3.6096 0.7274 -0.0067 6 6 3.6881 -0.6151 -0.0055 7 6 2.3071 -1.1093 0.0025 8 6 1.8702 -2.5156 0.0061 9 8 0.6839 -2.7838 0.0125 10 7 2.7849 -3.5054 0.0024 11 6 2.3503 -4.9044 0.0066 12 6 3.5766 -5.8194 0.0005 13 1 4.2154 -5.5653 -0.8453 14 8 4.3059 -5.6465 1.2172 15 6 3.1252 -7.2763 -0.1209 16 7 4.2994 -8.1524 -0.1261 17 6 4.1411 -9.5088 -0.2274 18 1 3.1506 -9.9327 -0.3038 19 6 5.2536 -10.3390 -0.2329 20 7 6.4607 -9.8223 -0.1413 21 14 5.0376 -12.1892 -0.3717 22 1 5.0460 -12.5825 -1.8037 23 1 6.1507 -12.8719 0.3356 24 1 3.7446 -12.5842 0.2426 25 1 -0.3633 0.0024 1.0277 26 1 -0.3634 0.8889 -0.5159 27 1 -0.3634 -0.8911 -0.5117 28 1 4.4497 1.4060 -0.0117 29 1 4.5889 -1.2110 -0.0093 30 1 3.7310 -3.2914 -0.0023 31 1 1.7470 -5.1001 -0.8799 32 1 1.7567 -5.0978 0.9001 33 1 3.7981 -5.8551 2.0132 34 1 2.4865 -7.5305 0.7250 35 1 2.5689 -7.4082 -1.0488 36 1 5.1889 -7.7717 -0.0586 37 1 7.2381 -10.4024 -0.1455 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732638968.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:42 Heat of formation + Delta-G solvation = -38.562388 kcal Electronic energy + Delta-G solvation = -19526.340270 eV Core-core repulsion = 16304.424056 eV Total energy + Delta-G solvation = -3221.916214 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.41760 -39.13421 -37.42941 -34.27720 -33.90181 -31.74969 -31.50581 -31.06942 -28.94982 -26.65326 -25.28735 -23.03457 -21.87977 -21.32481 -20.80004 -19.42878 -17.89130 -17.12143 -16.61014 -15.89797 -15.80644 -15.17709 -14.99276 -14.44338 -14.13482 -13.92757 -13.67051 -13.41648 -13.20320 -12.96372 -12.86409 -12.74556 -12.53346 -12.23860 -11.78687 -11.74190 -10.92445 -10.79728 -10.53838 -10.14074 -9.89616 -9.75261 -9.40921 -9.12480 -8.89498 -8.84461 -8.36475 -6.90231 -5.73040 -3.02469 1.63509 2.23290 2.87004 3.45918 3.46946 3.51480 3.52959 3.58650 4.58733 4.60527 4.75449 4.80994 4.93837 4.97071 5.10958 5.32431 5.35673 5.41853 5.59480 5.66490 5.69685 5.74740 5.89581 6.02269 6.06821 6.25781 6.53355 6.55979 6.60649 6.71579 6.74649 7.18870 7.71466 7.72455 8.02756 8.43681 8.45399 9.56893 10.14196 10.50249 11.49378 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.048496 B = 0.003014 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.228520 B = 9289.083414 C = 9736.792950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.103 3.897 3 N -0.555 5.555 4 H 0.415 0.585 5 C -0.020 4.020 6 C -0.166 4.166 7 C -0.234 4.234 8 C 0.588 3.412 9 O -0.557 6.557 10 N -0.717 5.717 11 C 0.092 3.908 12 C 0.089 3.911 13 H 0.103 0.897 14 O -0.552 6.552 15 C 0.126 3.874 16 N -0.726 5.726 17 C -0.243 4.243 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.930 5.930 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.169 0.831 29 H 0.147 0.853 30 H 0.404 0.596 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.373 0.627 34 H 0.023 0.977 35 H 0.029 0.971 36 H 0.389 0.611 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.238 24.446 0.752 25.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.015 4.015 3 N -0.151 5.151 4 H 0.251 0.749 5 C -0.147 4.147 6 C -0.190 4.190 7 C -0.244 4.244 8 C 0.377 3.623 9 O -0.437 6.437 10 N -0.368 5.368 11 C -0.032 4.032 12 C 0.029 3.971 13 H 0.121 0.879 14 O -0.357 6.357 15 C -0.002 4.002 16 N -0.371 5.371 17 C -0.374 4.374 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.579 5.579 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.121 0.879 28 H 0.186 0.814 29 H 0.165 0.835 30 H 0.239 0.761 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.220 0.780 34 H 0.041 0.959 35 H 0.046 0.954 36 H 0.224 0.776 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.675 24.361 0.336 25.862 hybrid contribution 0.267 -0.556 0.274 0.675 sum -8.408 23.805 0.610 25.254 Atomic orbital electron populations 1.20576 0.87015 1.04172 1.03449 1.20351 0.93724 0.85659 1.01786 1.41599 1.06303 1.08344 1.58815 0.74897 1.21721 0.85614 0.96496 1.10841 1.22108 0.95950 0.93722 1.07197 1.20167 0.93270 0.92132 1.18825 1.17347 0.85284 0.84100 0.75550 1.90720 1.16709 1.84534 1.51769 1.45690 1.10079 1.05704 1.75293 1.22063 0.97741 0.80415 1.03004 1.22383 0.91947 0.94381 0.88359 0.87872 1.86569 1.43050 1.90651 1.15442 1.21199 0.91821 0.88381 0.98833 1.42238 1.03345 1.02778 1.88734 1.19228 0.92764 0.82785 1.42590 0.91221 1.24760 0.95246 0.98040 1.02892 1.69681 0.96957 1.33995 1.57218 0.86179 0.76900 0.85491 0.77541 1.21712 1.21753 1.20763 0.90480 0.91977 0.87942 0.81357 0.83533 0.76109 0.90569 0.91181 0.77966 0.95933 0.95372 0.77639 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 9.88 36.01 0.36 -0.47 16 2 C 0.10 1.04 7.17 -81.88 -0.59 0.46 16 3 N -0.55 -3.97 5.90 -9.11 -0.05 -4.02 16 4 H 0.41 1.52 8.96 -40.82 -0.37 1.16 16 5 C -0.02 -0.15 11.89 -16.82 -0.20 -0.35 16 6 C -0.17 -1.65 10.56 -37.50 -0.40 -2.04 16 7 C -0.23 -2.87 6.29 -103.35 -0.65 -3.52 16 8 C 0.59 8.55 7.81 -12.59 -0.10 8.46 16 9 O -0.56 -9.51 14.82 5.26 0.08 -9.43 16 10 N -0.72 -9.56 5.50 -61.44 -0.34 -9.89 16 11 C 0.09 1.30 5.31 -4.04 -0.02 1.28 16 12 C 0.09 1.43 3.09 -26.73 -0.08 1.35 16 13 H 0.10 1.70 8.14 -51.93 -0.42 1.27 16 14 O -0.55 -9.15 13.03 -35.23 -0.46 -9.60 16 15 C 0.13 2.51 5.92 -4.04 -0.02 2.49 16 16 N -0.73 -18.70 5.49 -59.91 -0.33 -19.03 16 17 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 18 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -28.66 13.06 55.49 0.72 -27.93 16 21 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 26 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 27 H 0.10 1.13 6.47 -51.93 -0.34 0.79 16 28 H 0.17 0.74 8.06 -52.49 -0.42 0.31 16 29 H 0.15 1.26 7.70 -52.48 -0.40 0.86 16 30 H 0.40 4.85 7.59 -40.82 -0.31 4.54 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.37 5.23 9.05 45.56 0.41 5.65 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.39 10.71 7.54 -40.82 -0.31 10.40 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 320.58 15.07 4.83 4.83 Total: -1.00 -35.40 320.58 -6.76 -42.16 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -4.24 Total: 15.15 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.95 Total: 0.11 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: 0.00 Total: -60.88 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.38 Total: -19.04 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.40 -6.76 -42.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732638968.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.598 kcal (2) G-P(sol) polarization free energy of solvation -35.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds