Wall clock time and date at job start Mon Mar 30 2020 01:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33691 * 126.27862 * 2 1 4 4 C 1.30616 * 108.99524 * 180.02562 * 3 2 1 5 5 O 1.33664 * 109.15704 * 359.97438 * 4 3 2 6 6 C 1.35347 * 107.68277 * 0.02562 * 5 4 3 7 7 C 1.46720 * 126.64058 * 179.97438 * 6 5 4 8 8 O 1.21684 * 120.00196 * 172.63254 * 7 6 5 9 9 N 1.34777 * 119.99879 * 352.63318 * 7 6 5 10 10 C 1.46492 * 120.00278 * 3.62228 * 9 7 6 11 11 C 1.46503 * 119.99754 * 183.63044 * 9 7 6 12 12 H 1.09000 * 109.46977 * 359.97438 * 11 9 7 13 13 C 1.52991 * 109.47473 * 119.99742 * 11 9 7 14 14 C 1.53004 * 109.46683 * 239.99780 * 11 9 7 15 15 N 1.46495 * 109.47308 * 54.99843 * 14 11 9 16 16 C 1.36939 * 120.00245 * 179.97438 * 15 14 11 17 17 H 1.07998 * 119.99607 * 359.97438 * 16 15 14 18 18 C 1.38813 * 120.00255 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99746 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99933 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47037 * 90.00367 * 20 18 16 22 22 H 1.48503 * 109.46850 * 210.00411 * 20 18 16 23 23 H 1.48498 * 109.46880 * 329.99833 * 20 18 16 24 24 H 1.08995 * 109.47497 * 89.97224 * 1 2 3 25 25 H 1.09003 * 109.47216 * 209.97511 * 1 2 3 26 26 H 1.09002 * 109.47015 * 329.97515 * 1 2 3 27 27 H 1.08006 * 125.41819 * 180.02562 * 4 3 2 28 28 H 1.09004 * 109.47066 * 83.96703 * 10 9 7 29 29 H 1.09004 * 109.47419 * 203.96139 * 10 9 7 30 30 H 1.08997 * 109.47415 * 323.96464 * 10 9 7 31 31 H 1.09000 * 109.47129 * 59.99777 * 13 11 9 32 32 H 1.09001 * 109.47280 * 179.97438 * 13 11 9 33 33 H 1.08999 * 109.47070 * 299.99526 * 13 11 9 34 34 H 1.08999 * 109.46914 * 174.99560 * 14 11 9 35 35 H 1.08992 * 109.46871 * 294.99446 * 14 11 9 36 36 H 0.97008 * 120.00402 * 0.02562 * 15 14 11 37 37 H 0.97004 * 119.99751 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2981 1.0777 0.0000 4 6 3.5453 0.6897 -0.0006 5 8 3.5890 -0.6462 -0.0004 6 6 2.3136 -1.0993 -0.0002 7 6 1.8825 -2.5018 -0.0005 8 8 0.7048 -2.7764 0.1348 9 7 2.7910 -3.4859 -0.1506 10 6 4.2169 -3.1602 -0.2339 11 6 2.3526 -4.8815 -0.2308 12 1 1.2665 -4.9263 -0.1505 13 6 2.7904 -5.4776 -1.5700 14 6 2.9815 -5.6800 0.9129 15 7 2.6602 -5.0392 2.1904 16 6 3.1185 -5.5798 3.3621 17 1 3.7166 -6.4789 3.3443 18 6 2.8145 -4.9723 4.5726 19 7 2.0852 -3.8768 4.5942 20 14 3.4404 -5.7094 6.1708 21 1 4.7679 -5.1294 6.4970 22 1 2.4841 -5.4035 7.2650 23 1 3.5666 -7.1814 6.0209 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3633 0.8898 0.5142 27 1 4.4044 1.3442 -0.0003 28 1 4.6253 -3.0572 0.7715 29 1 4.7419 -3.9580 -0.7592 30 1 4.3445 -2.2230 -0.7756 31 1 3.8766 -5.4328 -1.6500 32 1 2.4646 -6.5161 -1.6294 33 1 2.3424 -4.9087 -2.3847 34 1 2.5868 -6.6960 0.9066 35 1 4.0633 -5.7097 0.7832 36 1 2.1220 -4.2322 2.2065 37 1 1.8724 -3.4525 5.4402 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753687487.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:05 Heat of formation + Delta-G solvation = 9.534137 kcal Electronic energy + Delta-G solvation = -21122.872903 eV Core-core repulsion = 17903.042312 eV Total energy + Delta-G solvation = -3219.830592 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.34539 -39.58427 -36.58732 -35.20686 -33.95795 -32.16590 -31.20304 -30.06635 -27.73279 -26.69056 -25.62595 -23.89188 -22.62949 -21.95182 -20.63960 -19.27122 -17.40308 -17.12258 -16.84622 -16.59712 -15.95813 -14.94248 -14.69761 -14.49806 -13.82531 -13.65221 -13.25449 -13.19231 -12.98394 -12.81056 -12.50035 -12.30121 -12.06217 -11.95580 -11.83893 -11.49351 -11.01057 -10.84083 -10.78490 -10.69336 -10.47930 -10.04844 -9.78655 -9.69272 -8.87033 -8.85100 -8.30510 -6.89566 -5.72082 -3.01966 0.99203 2.51404 2.57524 3.28239 3.36302 3.44155 3.48960 3.51435 4.09686 4.59269 4.72982 4.85876 5.15734 5.33012 5.36843 5.44771 5.52484 5.58937 5.60414 5.76276 5.80934 5.94125 5.97856 6.02681 6.08501 6.14946 6.20275 6.34423 6.42073 6.47208 6.69186 6.90552 7.48139 7.68371 7.71049 8.30389 8.45039 9.56454 10.14809 10.49831 11.49888 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017088 B = 0.006504 C = 0.005525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.136367 B = 4303.790892 C = 5066.724144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.071 3.929 3 N -0.494 5.494 4 C 0.185 3.815 5 O -0.183 6.183 6 C -0.095 4.095 7 C 0.608 3.392 8 O -0.513 6.513 9 N -0.585 5.585 10 C 0.078 3.922 11 C 0.126 3.874 12 H 0.103 0.897 13 C -0.156 4.156 14 C 0.144 3.856 15 N -0.728 5.728 16 C -0.242 4.242 17 H 0.069 0.931 18 C -0.013 4.013 19 N -0.928 5.928 20 Si 0.906 3.094 21 H -0.291 1.291 22 H -0.291 1.291 23 H -0.282 1.282 24 H 0.076 0.924 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.252 0.748 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.030 0.970 35 H 0.021 0.979 36 H 0.386 0.614 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.813 5.791 -14.339 15.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.053 4.053 3 N -0.224 5.224 4 C -0.040 4.040 5 O -0.069 6.069 6 C -0.150 4.150 7 C 0.395 3.605 8 O -0.390 6.390 9 N -0.316 5.316 10 C -0.065 4.065 11 C 0.023 3.977 12 H 0.121 0.879 13 C -0.214 4.214 14 C 0.016 3.984 15 N -0.373 5.373 16 C -0.373 4.373 17 H 0.087 0.913 18 C -0.209 4.209 19 N -0.576 5.576 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 H 0.095 0.905 25 H 0.118 0.882 26 H 0.094 0.906 27 H 0.268 0.732 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.039 0.961 36 H 0.220 0.780 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.144 6.086 -14.144 15.716 hybrid contribution 0.826 -0.564 1.113 1.497 sum 3.970 5.522 -13.031 14.699 Atomic orbital electron populations 1.20397 0.85488 1.04795 1.03199 1.21991 0.98321 0.86359 0.98602 1.70300 1.01371 1.31634 1.19091 1.28258 0.97530 0.80244 0.97945 1.84718 1.29619 1.23721 1.68836 1.22990 0.81173 0.96378 1.14478 1.16358 0.85563 0.81367 0.77239 1.90839 1.16325 1.81391 1.50460 1.47549 1.06983 1.06406 1.70692 1.21914 0.80717 1.00936 1.02946 1.21500 1.01687 0.79196 0.95300 0.87856 1.22077 1.01708 1.01264 0.96383 1.21009 0.96779 0.94715 0.85942 1.42303 1.63505 1.31520 0.99960 1.19199 1.26499 1.07043 0.84567 0.91255 1.24761 1.00697 0.97803 0.97650 1.69692 1.42246 1.20518 1.25176 0.86205 0.77894 0.78359 0.83806 1.21832 1.21776 1.20766 0.90494 0.88163 0.90635 0.73235 0.91483 0.90740 0.90952 0.92259 0.91069 0.92524 0.95220 0.96141 0.77959 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 9.96 36.01 0.36 -0.83 16 2 C 0.07 1.16 7.16 -82.46 -0.59 0.57 16 3 N -0.49 -7.36 11.26 -10.88 -0.12 -7.48 16 4 C 0.19 2.20 13.21 52.25 0.69 2.88 16 5 O -0.18 -2.63 7.51 4.41 0.03 -2.60 16 6 C -0.10 -1.63 6.79 -36.84 -0.25 -1.88 16 7 C 0.61 11.51 7.34 -12.83 -0.09 11.42 16 8 O -0.51 -10.85 14.11 5.20 0.07 -10.78 16 9 N -0.58 -10.05 2.24 -175.47 -0.39 -10.44 16 10 C 0.08 1.12 8.77 59.84 0.52 1.64 16 11 C 0.13 2.13 2.79 -67.93 -0.19 1.94 16 12 H 0.10 1.95 6.90 -51.93 -0.36 1.59 16 13 C -0.16 -1.93 9.18 37.15 0.34 -1.59 16 14 C 0.14 2.90 5.56 -4.04 -0.02 2.88 16 15 N -0.73 -19.00 5.43 -59.91 -0.33 -19.32 16 16 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -29.09 13.06 55.49 0.72 -28.36 16 20 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.10 1.65 6.35 -51.93 -0.33 1.32 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.25 1.47 8.06 -52.48 -0.42 1.05 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.07 0.90 6.44 -51.93 -0.33 0.56 16 30 H 0.07 0.92 5.43 -51.93 -0.28 0.64 16 31 H 0.06 0.66 6.67 -51.93 -0.35 0.32 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.02 0.40 7.84 -51.93 -0.41 0.00 16 36 H 0.39 10.99 7.07 -40.82 -0.29 10.70 16 37 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 310.46 15.07 4.68 4.68 Total: -1.00 -35.00 310.46 -4.69 -39.69 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -4.85 Total: 7.29 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 0.52 Total: 9.52 kcal Atomic # 7 Polarization: -65.49 SS G_CDS: -0.12 Total: -65.60 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.11 Total: -13.37 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.00 -4.69 -39.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753687487.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.220 kcal (2) G-P(sol) polarization free energy of solvation -35.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds