Wall clock time and date at job start Mon Mar 30 2020 00:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46906 * 111.00110 * 2 1 4 4 C 1.39221 * 111.00475 * 123.95681 * 2 1 3 5 5 C 1.38790 * 120.16298 * 294.34558 * 4 2 1 6 6 C 1.38111 * 120.06512 * 180.02562 * 5 4 2 7 7 C 1.38566 * 120.40810 * 359.97211 * 6 5 4 8 8 C 1.37851 * 120.32553 * 359.74471 * 7 6 5 9 9 C 1.39658 * 119.92335 * 0.53207 * 8 7 6 10 10 C 1.47670 * 120.19599 * 179.74376 * 9 8 7 11 11 C 1.39287 * 120.34275 * 67.09688 * 10 9 8 12 12 C 1.38005 * 119.97156 * 179.97438 * 11 10 9 13 13 C 1.38984 * 120.69108 * 359.97438 * 12 11 10 14 14 C 1.36401 * 120.70641 * 359.97438 * 13 12 11 15 15 C 1.40761 * 119.99328 * 0.30301 * 14 13 12 16 16 C 1.40824 * 120.33533 * 179.69798 * 15 14 13 17 17 H 1.08001 * 119.99789 * 207.66302 * 16 15 14 18 18 C 1.40041 * 120.00052 * 27.65637 * 16 15 14 19 19 N 1.30800 * 119.99595 * 15.22606 * 18 16 15 20 20 Si 1.86798 * 120.00175 * 195.21497 * 18 16 15 21 21 H 1.48506 * 109.46810 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46817 * 120.00196 * 20 18 16 23 23 H 1.48497 * 109.47599 * 240.00621 * 20 18 16 24 24 H 1.09008 * 109.46965 * 296.04357 * 1 2 3 25 25 H 1.08999 * 109.47400 * 56.04016 * 1 2 3 26 26 H 1.09003 * 109.47294 * 176.04776 * 1 2 3 27 27 H 1.08993 * 109.47026 * 183.88263 * 3 2 1 28 28 H 1.09000 * 109.46731 * 303.88769 * 3 2 1 29 29 H 1.09003 * 109.46676 * 63.87989 * 3 2 1 30 30 H 1.07996 * 119.96868 * 0.02562 * 5 4 2 31 31 H 1.08008 * 119.79715 * 179.97438 * 6 5 4 32 32 H 1.07998 * 119.83780 * 179.97438 * 7 6 5 33 33 H 1.08001 * 120.03139 * 180.28073 * 8 7 6 34 34 H 1.07995 * 120.01713 * 359.95302 * 11 10 9 35 35 H 1.08002 * 119.65395 * 180.02562 * 12 11 10 36 36 H 1.07992 * 119.64412 * 180.02562 * 13 12 11 37 37 H 1.07999 * 120.00094 * 180.02562 * 14 13 12 38 38 H 0.97003 * 119.99485 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9680 -0.7260 1.0780 5 6 1.7561 -0.2818 2.3758 6 6 2.2526 -1.0033 3.4437 7 6 2.9636 -2.1733 3.2298 8 6 3.1786 -2.6326 1.9480 9 6 2.6878 -1.9108 0.8578 10 6 2.9196 -2.3944 -0.5181 11 6 2.3186 -3.5701 -0.9613 12 6 2.5400 -4.0147 -2.2489 13 6 3.3594 -3.3004 -3.1149 14 6 3.9611 -2.1450 -2.7105 15 6 3.7601 -1.6678 -1.4016 16 6 4.3829 -0.4792 -0.9744 17 1 4.6134 -0.3359 0.0710 18 6 4.7034 0.5169 -1.9051 19 7 4.1725 0.4904 -3.1002 20 14 5.8888 1.8835 -1.4396 21 1 6.3463 1.6867 -0.0406 22 1 7.0602 1.8546 -2.3518 23 1 5.2026 3.1953 -1.5565 24 1 -0.3633 0.4512 0.9234 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3634 -1.0252 -0.0708 27 1 3.0828 1.3432 -0.0696 28 1 1.5907 1.9160 -0.8531 29 1 1.7032 1.8728 0.9228 30 1 1.2026 0.6288 2.5507 31 1 2.0855 -0.6535 4.4518 32 1 3.3480 -2.7300 4.0717 33 1 3.7296 -3.5475 1.7870 34 1 1.6798 -4.1338 -0.2976 35 1 2.0711 -4.9268 -2.5873 36 1 3.5207 -3.6636 -4.1191 37 1 4.5952 -1.5988 -3.3930 38 1 4.3942 1.1807 -3.7447 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041663236.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:58 Heat of formation + Delta-G solvation = 45.457051 kcal Electronic energy + Delta-G solvation = -20550.936968 eV Core-core repulsion = 17743.513374 eV Total energy + Delta-G solvation = -2807.423594 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.80938 -38.86485 -37.19097 -35.40742 -33.17665 -31.33811 -30.68951 -29.53911 -28.40266 -26.91432 -25.29214 -23.84639 -22.58724 -21.78368 -21.07712 -19.02666 -17.83835 -17.20890 -16.59083 -16.30619 -15.89603 -15.79696 -15.24986 -15.03588 -14.86220 -14.40876 -14.31412 -13.76436 -13.48502 -13.24704 -13.07990 -12.96169 -12.86817 -12.75789 -12.60164 -12.39433 -12.17965 -12.07869 -11.89293 -11.37082 -11.12520 -10.93011 -9.63751 -9.40666 -9.12918 -9.01669 -8.88255 -8.46939 -6.09913 0.54538 0.58266 1.09463 1.29625 1.38375 1.48828 1.54472 2.23284 2.88343 3.00205 3.20390 3.87441 4.16752 4.22122 4.32484 4.36786 4.44949 4.53902 4.55827 4.66140 4.69776 4.72542 4.86655 4.94563 4.97275 5.02245 5.19705 5.26523 5.33020 5.43254 5.56257 5.65288 5.68784 5.83984 5.87605 6.09258 6.22295 6.26079 6.29723 6.32606 6.54067 6.78996 6.88174 7.11507 7.22873 8.47477 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.013851 B = 0.010395 C = 0.007842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.092894 B = 2693.005609 C = 3569.568408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.506 5.506 3 C 0.044 3.956 4 C 0.094 3.906 5 C -0.163 4.163 6 C -0.126 4.126 7 C -0.123 4.123 8 C -0.132 4.132 9 C 0.003 3.997 10 C -0.159 4.159 11 C -0.089 4.089 12 C -0.247 4.247 13 C -0.114 4.114 14 C -0.187 4.187 15 C 0.120 3.880 16 C -0.442 4.442 17 H 0.058 0.942 18 C 0.054 3.946 19 N -0.815 5.815 20 Si 0.944 3.056 21 H -0.263 1.263 22 H -0.269 1.269 23 H -0.264 1.264 24 H 0.038 0.962 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.032 0.968 30 H 0.126 0.874 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.574 0.998 8.871 9.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.226 5.226 3 C -0.103 4.103 4 C 0.000 4.000 5 C -0.183 4.183 6 C -0.144 4.144 7 C -0.141 4.141 8 C -0.151 4.151 9 C 0.002 3.998 10 C -0.161 4.161 11 C -0.107 4.107 12 C -0.266 4.266 13 C -0.132 4.132 14 C -0.207 4.207 15 C 0.118 3.882 16 C -0.472 4.472 17 H 0.076 0.924 18 C -0.161 4.161 19 N -0.441 5.441 20 Si 0.767 3.233 21 H -0.186 1.186 22 H -0.194 1.194 23 H -0.188 1.188 24 H 0.056 0.944 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.144 0.856 31 H 0.164 0.836 32 H 0.165 0.835 33 H 0.137 0.863 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.449 0.934 8.183 8.929 hybrid contribution 0.267 1.031 0.172 1.079 sum -3.181 1.965 8.355 9.153 Atomic orbital electron populations 1.22341 0.86126 1.01611 1.00678 1.58962 1.07578 1.13988 1.42064 1.22310 1.01447 0.87263 0.99293 1.18984 0.97955 0.94248 0.88852 1.21717 1.02493 1.01083 0.92973 1.21247 0.98698 0.95362 0.99091 1.21288 0.99334 0.97053 0.96450 1.21433 1.00770 1.00346 0.92516 1.18917 0.94726 0.93434 0.92728 1.18680 1.04291 0.98667 0.94425 1.20783 0.98923 0.95363 0.95644 1.20506 1.08033 1.02795 0.95244 1.20652 0.98427 0.95822 0.98315 1.20979 1.04519 0.96901 0.98269 1.17644 0.88405 0.91461 0.90694 1.19178 1.33811 1.00156 0.94034 0.92359 1.26324 0.95297 1.00388 0.94139 1.69885 1.35226 1.32802 1.06207 0.85733 0.79259 0.78716 0.79609 1.18649 1.19430 1.18841 0.94395 0.91234 0.92670 0.91936 0.92350 0.95007 0.85615 0.83580 0.83539 0.86258 0.87912 0.87263 0.88118 0.88532 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.32 9.39 127.69 1.20 2.52 16 2 N -0.51 -20.58 3.77 -744.16 -2.80 -23.39 16 3 C 0.04 1.67 8.97 127.69 1.15 2.82 16 4 C 0.09 3.72 4.20 38.62 0.16 3.88 16 5 C -0.16 -5.31 8.57 22.37 0.19 -5.12 16 6 C -0.13 -3.54 10.03 22.32 0.22 -3.32 16 7 C -0.12 -3.63 10.03 22.26 0.22 -3.41 16 8 C -0.13 -4.83 9.76 22.52 0.22 -4.61 16 9 C 0.00 0.12 4.33 -19.92 -0.09 0.04 16 10 C -0.16 -7.70 4.90 -19.62 -0.10 -7.79 16 11 C -0.09 -4.06 9.75 22.47 0.22 -3.84 16 12 C -0.25 -11.13 10.03 22.39 0.22 -10.90 16 13 C -0.11 -5.47 9.96 22.02 0.22 -5.25 16 14 C -0.19 -9.96 8.61 22.46 0.19 -9.77 16 15 C 0.12 6.37 5.39 -21.11 -0.11 6.25 16 16 C -0.44 -22.91 5.68 23.34 0.13 -22.78 16 17 H 0.06 3.10 7.23 -2.91 -0.02 3.08 16 18 C 0.05 2.64 4.49 85.28 0.38 3.02 16 19 N -0.82 -41.75 11.01 21.84 0.24 -41.51 16 20 Si 0.94 38.04 29.13 68.60 2.00 40.04 16 21 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 22 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 23 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 24 H 0.04 1.09 7.44 -2.38 -0.02 1.07 16 25 H 0.07 2.22 8.12 -2.39 -0.02 2.20 16 26 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.06 2.70 5.10 -2.39 -0.01 2.69 16 28 H 0.06 2.19 8.12 -2.39 -0.02 2.17 16 29 H 0.03 1.03 7.03 -2.39 -0.02 1.02 16 30 H 0.13 3.59 7.01 -2.91 -0.02 3.57 16 31 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 32 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 33 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 34 H 0.10 4.19 8.06 -2.91 -0.02 4.17 16 35 H 0.11 4.27 8.06 -2.91 -0.02 4.25 16 36 H 0.10 4.33 8.06 -2.91 -0.02 4.30 16 37 H 0.10 5.36 6.30 -2.91 -0.02 5.35 16 38 H 0.28 13.25 8.30 -92.71 -0.77 12.48 16 Total: -1.00 -58.58 310.45 4.92 -53.65 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 1.05 Total: 29.45 kcal Atomic # 6 Polarization: -62.69 SS G_CDS: 4.44 Total: -58.25 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: -2.56 Total: -64.90 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.00 Total: 40.04 kcal Total: -58.58 4.92 -53.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041663236.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.110 kcal (2) G-P(sol) polarization free energy of solvation -58.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds