Wall clock time and date at job start Mon Mar 30 2020 00:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.46792 * 2 1 4 4 C 1.46498 * 120.00159 * 270.00129 * 3 2 1 5 5 C 1.50707 * 109.46935 * 269.99897 * 4 3 2 6 6 H 1.07999 * 120.00037 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99606 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00496 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99690 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46894 * 90.00524 * 9 7 5 11 11 H 1.48494 * 109.47371 * 210.00685 * 9 7 5 12 12 H 1.48504 * 109.47295 * 330.01136 * 9 7 5 13 13 C 1.34775 * 119.99871 * 90.00163 * 3 2 1 14 14 O 1.21575 * 120.00367 * 179.97438 * 13 3 2 15 15 N 1.34777 * 119.99877 * 0.02562 * 13 3 2 16 16 C 1.38637 * 119.99832 * 180.02562 * 15 13 3 17 17 N 1.30953 * 125.70152 * 0.26417 * 16 15 13 18 18 C 1.34646 * 108.62137 * 180.17243 * 17 16 15 19 19 C 1.50706 * 126.11173 * 179.86539 * 18 17 16 20 20 C 1.34151 * 107.78003 * 359.59673 * 18 17 16 21 21 C 1.50706 * 126.37647 * 180.27418 * 20 18 17 22 22 O 1.34198 * 125.69900 * 179.97438 * 16 15 13 23 23 H 1.09000 * 109.47330 * 299.99743 * 1 2 3 24 24 H 1.08999 * 109.47066 * 59.99691 * 1 2 3 25 25 H 1.08998 * 109.47086 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47330 * 240.00257 * 2 1 3 27 27 H 1.08999 * 109.47242 * 119.99783 * 2 1 3 28 28 H 1.08992 * 109.47267 * 29.99850 * 4 3 2 29 29 H 1.08993 * 109.47028 * 150.00366 * 4 3 2 30 30 H 0.96991 * 120.00298 * 180.02562 * 8 7 5 31 31 H 0.96995 * 120.00596 * 359.97438 * 15 13 3 32 32 H 1.09001 * 109.46953 * 269.68677 * 19 18 17 33 33 H 1.09000 * 109.47318 * 29.68275 * 19 18 17 34 34 H 1.09000 * 109.47161 * 149.68905 * 19 18 17 35 35 H 1.08992 * 109.46900 * 90.00271 * 21 20 18 36 36 H 1.08998 * 109.46973 * 210.00376 * 21 20 18 37 37 H 1.09000 * 109.46537 * 330.00056 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6858 1.8352 -1.7037 6 1 4.3426 1.2304 -1.0961 7 6 4.1490 2.3899 -2.8779 8 7 3.3490 3.1259 -3.6181 9 14 5.9135 2.0971 -3.4168 10 1 5.9775 0.8757 -4.2592 11 1 6.3920 3.2643 -4.2001 12 1 6.7735 1.9181 -2.2195 13 6 2.2429 2.0166 1.1672 14 8 2.6485 3.1627 1.1673 15 7 2.0188 1.3810 2.3344 16 6 2.2494 2.0347 3.5350 17 7 2.6781 3.2652 3.6651 18 6 2.7836 3.5472 4.9775 19 6 3.2443 4.8536 5.5710 20 6 2.3996 2.4595 5.6624 21 6 2.3495 2.3191 7.1621 22 8 2.0653 1.5140 4.7581 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.5817 1.6878 -2.0283 29 1 2.0954 3.1411 -1.1383 30 1 3.6748 3.5158 -4.4442 31 1 1.6956 0.4665 2.3344 32 1 4.3245 4.8267 5.7143 33 1 2.9877 5.6700 4.8959 34 1 2.7541 5.0091 6.5321 35 1 1.3683 2.6271 7.5232 36 1 2.5275 1.2792 7.4358 37 1 3.1166 2.9496 7.6117 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049211092.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:24 Heat of formation + Delta-G solvation = 10.699843 kcal Electronic energy + Delta-G solvation = -20464.756447 eV Core-core repulsion = 17244.976404 eV Total energy + Delta-G solvation = -3219.780043 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.09901 -39.71553 -35.64333 -35.01727 -34.64127 -32.78155 -32.01014 -30.18875 -29.06847 -27.31860 -25.29628 -23.25153 -23.10807 -21.79649 -20.90090 -19.26840 -18.08044 -17.03502 -16.85647 -16.38579 -15.68576 -14.97867 -14.63442 -14.18667 -13.95839 -13.67186 -13.39681 -13.22573 -13.18479 -13.07764 -12.60443 -12.39314 -12.09483 -11.96560 -11.80290 -11.22601 -11.07683 -10.93619 -10.82065 -10.55160 -10.15788 -10.06467 -9.99613 -9.63443 -9.27255 -8.42265 -7.94417 -7.63625 -6.03307 -4.07872 1.62481 1.92947 2.93466 3.31771 3.38952 3.43286 3.49792 3.90748 4.14992 4.47405 4.78141 4.87449 5.04378 5.16591 5.25525 5.29517 5.31240 5.50917 5.58793 5.59961 5.66012 5.76461 5.83782 5.92544 6.13652 6.15679 6.39245 6.40507 6.53889 6.84820 7.21472 7.44506 7.52642 7.92957 8.09884 8.22593 8.51414 8.92258 9.16712 9.57306 11.04725 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022232 B = 0.004949 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.153134 B = 5656.816632 C = 6428.787994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.104 3.896 3 N -0.601 5.601 4 C 0.262 3.738 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.699 3.301 14 O -0.516 6.516 15 N -0.635 5.635 16 C 0.445 3.555 17 N -0.459 5.459 18 C 0.010 3.990 19 C -0.070 4.070 20 C -0.090 4.090 21 C -0.054 4.054 22 O -0.222 6.222 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.047 0.953 30 H 0.264 0.736 31 H 0.412 0.588 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.113 -5.760 17.729 19.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.020 4.020 3 N -0.338 5.338 4 C 0.143 3.857 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.400 3.600 14 O -0.385 6.385 15 N -0.298 5.298 16 C 0.146 3.854 17 N -0.196 5.196 18 C -0.111 4.111 19 C -0.127 4.127 20 C -0.143 4.143 21 C -0.111 4.111 22 O -0.110 6.110 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.251 0.749 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.690 -4.413 16.923 18.107 hybrid contribution 0.578 -1.379 0.058 1.496 sum -4.113 -5.792 16.981 18.407 Atomic orbital electron populations 1.22269 0.96516 1.01629 1.02673 1.21441 0.93710 0.84205 1.02685 1.47619 1.67314 1.13369 1.05471 1.19300 0.96393 0.93595 0.76373 1.21452 0.96946 1.32052 1.06269 0.92412 1.24910 0.97850 0.94838 0.96363 1.69922 1.35729 1.33360 1.14314 0.86491 0.84702 0.77636 0.78559 1.20673 1.21061 1.19915 1.15688 0.80204 0.85010 0.79092 1.91060 1.48198 1.15359 1.83913 1.41981 1.70246 1.17460 1.00063 1.21116 0.97436 0.86871 0.79943 1.71233 1.20792 1.10399 1.17169 1.21588 1.03139 0.97572 0.88754 1.20096 1.01115 0.91728 0.99745 1.22705 1.10977 0.88467 0.92175 1.20110 1.03252 1.03609 0.84092 1.84279 1.69734 1.42036 1.14975 0.93156 0.91569 0.91911 0.89082 0.92508 0.94430 0.93528 0.92679 0.74922 0.90773 0.90343 0.91007 0.90492 0.90872 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.16 0.38 -1.83 16 2 C 0.10 1.60 5.89 -4.04 -0.02 1.57 16 3 N -0.60 -12.74 2.46 -180.81 -0.44 -13.18 16 4 C 0.26 6.80 5.16 -5.19 -0.03 6.77 16 5 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 9 Si 0.90 22.05 29.54 -169.99 -5.02 17.02 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.70 15.60 8.24 -86.92 -0.72 14.88 16 14 O -0.52 -14.10 14.59 5.30 0.08 -14.02 16 15 N -0.63 -11.30 5.26 -17.47 -0.09 -11.40 16 16 C 0.44 8.30 8.98 -86.61 -0.78 7.52 16 17 N -0.46 -9.47 9.46 -10.57 -0.10 -9.57 16 18 C 0.01 0.16 7.10 -82.79 -0.59 -0.43 16 19 C -0.07 -0.82 10.04 36.01 0.36 -0.45 16 20 C -0.09 -1.24 7.38 -35.74 -0.26 -1.50 16 21 C -0.05 -0.44 10.03 36.01 0.36 -0.08 16 22 O -0.22 -3.50 10.80 3.93 0.04 -3.45 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 27 H 0.06 0.71 6.36 -51.93 -0.33 0.38 16 28 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 29 H 0.05 1.38 7.42 -51.93 -0.39 0.99 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.41 5.63 6.55 -40.82 -0.27 5.36 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.60 7.77 -51.93 -0.40 0.19 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.55 7.77 -51.93 -0.40 0.15 16 LS Contribution 319.74 15.07 4.82 4.82 Total: -1.00 -36.08 319.74 -6.83 -42.91 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.13 Total: -0.17 kcal Atomic # 6 Polarization: 14.56 SS G_CDS: -1.71 Total: 12.84 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: 0.10 Total: -59.96 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.12 Total: -17.47 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -36.08 -6.83 -42.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049211092.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.610 kcal (2) G-P(sol) polarization free energy of solvation -36.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds