Wall clock time and date at job start Mon Mar 30 2020 00:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.46792 * 2 1 4 4 C 1.46498 * 120.00159 * 270.00129 * 3 2 1 5 5 C 1.50707 * 109.46935 * 269.99897 * 4 3 2 6 6 H 1.07999 * 120.00037 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99606 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00496 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99690 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46894 * 90.00524 * 9 7 5 11 11 H 1.48494 * 109.47371 * 210.00685 * 9 7 5 12 12 H 1.48504 * 109.47295 * 330.01136 * 9 7 5 13 13 C 1.34775 * 119.99871 * 90.00163 * 3 2 1 14 14 O 1.21575 * 120.00367 * 179.97438 * 13 3 2 15 15 N 1.34777 * 119.99877 * 0.02562 * 13 3 2 16 16 C 1.38637 * 119.99832 * 180.02562 * 15 13 3 17 17 N 1.30953 * 125.70152 * 0.26417 * 16 15 13 18 18 C 1.34646 * 108.62137 * 180.17243 * 17 16 15 19 19 C 1.50706 * 126.11173 * 179.86539 * 18 17 16 20 20 C 1.34151 * 107.78003 * 359.59673 * 18 17 16 21 21 C 1.50706 * 126.37647 * 180.27418 * 20 18 17 22 22 O 1.34198 * 125.69900 * 179.97438 * 16 15 13 23 23 H 1.09000 * 109.47330 * 299.99743 * 1 2 3 24 24 H 1.08999 * 109.47066 * 59.99691 * 1 2 3 25 25 H 1.08998 * 109.47086 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47330 * 240.00257 * 2 1 3 27 27 H 1.08999 * 109.47242 * 119.99783 * 2 1 3 28 28 H 1.08992 * 109.47267 * 29.99850 * 4 3 2 29 29 H 1.08993 * 109.47028 * 150.00366 * 4 3 2 30 30 H 0.96991 * 120.00298 * 180.02562 * 8 7 5 31 31 H 0.96995 * 120.00596 * 359.97438 * 15 13 3 32 32 H 1.09001 * 109.46953 * 269.68677 * 19 18 17 33 33 H 1.09000 * 109.47318 * 29.68275 * 19 18 17 34 34 H 1.09000 * 109.47161 * 149.68905 * 19 18 17 35 35 H 1.08992 * 109.46900 * 90.00271 * 21 20 18 36 36 H 1.08998 * 109.46973 * 210.00376 * 21 20 18 37 37 H 1.09000 * 109.46537 * 330.00056 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6858 1.8352 -1.7037 6 1 4.3426 1.2304 -1.0961 7 6 4.1490 2.3899 -2.8779 8 7 3.3490 3.1259 -3.6181 9 14 5.9135 2.0971 -3.4168 10 1 5.9775 0.8757 -4.2592 11 1 6.3920 3.2643 -4.2001 12 1 6.7735 1.9181 -2.2195 13 6 2.2429 2.0166 1.1672 14 8 2.6485 3.1627 1.1673 15 7 2.0188 1.3810 2.3344 16 6 2.2494 2.0347 3.5350 17 7 2.6781 3.2652 3.6651 18 6 2.7836 3.5472 4.9775 19 6 3.2443 4.8536 5.5710 20 6 2.3996 2.4595 5.6624 21 6 2.3495 2.3191 7.1621 22 8 2.0653 1.5140 4.7581 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.5817 1.6878 -2.0283 29 1 2.0954 3.1411 -1.1383 30 1 3.6748 3.5158 -4.4442 31 1 1.6956 0.4665 2.3344 32 1 4.3245 4.8267 5.7143 33 1 2.9877 5.6700 4.8959 34 1 2.7541 5.0091 6.5321 35 1 1.3683 2.6271 7.5232 36 1 2.5275 1.2792 7.4358 37 1 3.1166 2.9496 7.6117 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049211092.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:24 Heat of formation + Delta-G solvation = -15.970723 kcal Electronic energy + Delta-G solvation = -20465.912970 eV Core-core repulsion = 17244.976404 eV Total energy + Delta-G solvation = -3220.936566 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.35421 -41.38493 -37.27390 -36.36957 -36.14323 -34.82169 -33.16228 -31.68015 -29.98407 -29.22469 -26.61347 -25.02200 -24.44264 -23.24483 -22.18552 -20.82741 -19.50284 -18.71925 -18.43389 -18.12407 -17.10461 -16.61228 -16.39153 -15.86327 -15.28031 -14.91659 -14.63436 -14.50814 -14.20043 -14.17440 -13.83669 -13.68282 -13.31339 -13.11817 -13.09233 -12.97021 -12.72453 -12.53085 -12.46492 -12.22035 -12.02266 -11.74142 -11.46909 -11.40686 -10.95220 -10.62631 -9.61858 -9.00091 -8.21584 -6.35820 0.39673 0.52573 1.36783 1.40495 1.50464 1.60298 2.17895 2.25610 2.40672 2.74852 3.08578 3.62632 3.82135 4.00480 4.09907 4.32500 4.37303 4.47619 4.67571 4.73125 4.80033 4.82852 4.86138 4.92955 4.99833 5.05070 5.13638 5.18919 5.34174 5.34808 5.45952 5.54703 5.64629 5.84158 6.05306 6.63055 6.72004 7.05087 7.30049 7.49519 8.85441 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022232 B = 0.004949 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.153134 B = 5656.816632 C = 6428.787994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.603 5.603 4 C 0.280 3.720 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.281 1.281 12 H -0.278 1.278 13 C 0.700 3.300 14 O -0.578 6.578 15 N -0.616 5.616 16 C 0.417 3.583 17 N -0.510 5.510 18 C -0.030 4.030 19 C -0.066 4.066 20 C -0.065 4.065 21 C -0.054 4.054 22 O -0.214 6.214 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.037 0.963 29 H -0.001 1.001 30 H 0.268 0.732 31 H 0.432 0.568 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.913 -7.696 20.050 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.027 4.027 3 N -0.339 5.339 4 C 0.159 3.841 5 C -0.583 4.583 6 H 0.070 0.930 7 C -0.188 4.188 8 N -0.566 5.566 9 Si 0.791 3.209 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.203 1.203 13 C 0.401 3.599 14 O -0.452 6.452 15 N -0.280 5.280 16 C 0.118 3.882 17 N -0.248 5.248 18 C -0.150 4.150 19 C -0.123 4.123 20 C -0.118 4.118 21 C -0.110 4.110 22 O -0.102 6.102 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.121 0.879 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.055 0.945 29 H 0.017 0.983 30 H 0.077 0.923 31 H 0.274 0.726 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.130 0.870 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.530 -6.437 19.293 20.837 hybrid contribution 0.469 -0.773 -0.511 1.038 sum -4.061 -7.210 18.782 20.524 Atomic orbital electron populations 1.22196 0.94223 1.03911 1.01822 1.21832 0.95566 0.80962 1.04319 1.47478 1.67237 1.15347 1.03802 1.18746 0.95556 0.91438 0.78402 1.21707 0.97918 1.32194 1.06509 0.93001 1.25795 1.02223 0.94400 0.96395 1.70035 1.37725 1.34059 1.14767 0.85436 0.79105 0.78299 0.78056 1.18501 1.20644 1.20278 1.15749 0.79596 0.84403 0.80146 1.91010 1.50886 1.18126 1.85155 1.41319 1.69881 1.17904 0.98906 1.20993 0.99335 0.87076 0.80757 1.71130 1.21407 1.11865 1.20419 1.22246 1.05142 1.00063 0.87508 1.20223 1.02066 0.89156 1.00822 1.23880 1.06944 0.86947 0.94032 1.20486 1.05528 1.05443 0.79556 1.84307 1.69384 1.42303 1.14160 0.92933 0.93532 0.87943 0.89295 0.89013 0.94533 0.98267 0.92341 0.72615 0.89861 0.92327 0.87025 0.88138 0.89295 0.86736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 10.24 71.98 0.74 -3.19 16 2 C 0.10 2.83 5.89 86.38 0.51 3.34 16 3 N -0.60 -26.25 2.46 -844.21 -2.07 -28.33 16 4 C 0.28 15.22 5.16 85.64 0.44 15.66 16 5 C -0.54 -31.80 9.39 25.60 0.24 -31.56 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.65 5.46 84.66 0.46 1.11 16 8 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 9 Si 0.97 45.64 29.54 68.60 2.03 47.67 16 10 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 C 0.70 32.39 8.24 179.05 1.48 33.86 16 14 O -0.58 -33.49 14.59 -3.95 -0.06 -33.55 16 15 N -0.62 -22.06 5.26 -437.64 -2.30 -24.36 16 16 C 0.42 15.66 8.98 178.95 1.61 17.27 16 17 N -0.51 -21.67 9.46 -301.69 -2.85 -24.53 16 18 C -0.03 -0.95 7.10 41.20 0.29 -0.66 16 19 C -0.07 -1.46 10.04 71.24 0.71 -0.75 16 20 C -0.07 -1.64 7.38 24.76 0.18 -1.46 16 21 C -0.05 -0.64 10.03 71.24 0.71 0.08 16 22 O -0.21 -6.43 10.80 -8.87 -0.10 -6.53 16 23 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.09 2.71 8.07 -2.39 -0.02 2.69 16 27 H 0.09 2.08 6.36 -2.39 -0.02 2.06 16 28 H 0.04 1.97 8.07 -2.39 -0.02 1.95 16 29 H 0.00 -0.05 7.42 -2.39 -0.02 -0.07 16 30 H 0.27 15.25 8.31 -92.72 -0.77 14.48 16 31 H 0.43 11.25 6.55 -92.71 -0.61 10.64 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.11 1.50 7.77 -2.39 -0.02 1.48 16 35 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.11 0.84 7.77 -2.39 -0.02 0.83 16 Total: -1.00 -84.14 319.74 2.78 -81.36 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.48 Total: 10.59 kcal Atomic # 6 Polarization: 26.33 SS G_CDS: 7.38 Total: 33.71 kcal Atomic # 7 Polarization: -126.32 SS G_CDS: -6.94 Total: -133.26 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -0.15 Total: -40.07 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -84.14 2.78 -81.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049211092.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.392 kcal (2) G-P(sol) polarization free energy of solvation -84.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds