Wall clock time and date at job start Mon Mar 30 2020 01:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33389 * 125.20441 * 2 1 4 4 C 1.38428 * 114.92202 * 180.02562 * 3 2 1 5 5 C 1.50697 * 122.54244 * 179.97438 * 4 3 2 6 6 H 1.08995 * 109.47618 * 145.02076 * 5 4 3 7 7 C 1.53003 * 109.46664 * 265.02195 * 5 4 3 8 8 N 1.46903 * 109.47082 * 25.01432 * 5 4 3 9 9 C 1.46898 * 110.99673 * 155.00305 * 8 5 4 10 10 C 1.53006 * 109.47006 * 180.02562 * 9 8 5 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47055 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00290 * 0.02562 * 12 11 10 14 14 C 1.37887 * 120.00079 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99685 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00129 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47011 * 90.00204 * 16 14 12 18 18 H 1.48498 * 109.47112 * 210.00472 * 16 14 12 19 19 H 1.48499 * 109.47134 * 330.00583 * 16 14 12 20 20 C 1.33390 * 114.92070 * 0.24236 * 4 3 2 21 21 C 1.50696 * 125.20748 * 179.75789 * 20 4 3 22 22 S 1.75881 * 125.20190 * 180.02562 * 2 1 3 23 23 H 1.08993 * 109.46977 * 89.99685 * 1 2 3 24 24 H 1.08992 * 109.47356 * 210.00324 * 1 2 3 25 25 H 1.09003 * 109.46843 * 330.00100 * 1 2 3 26 26 H 1.07998 * 122.53985 * 0.05543 * 3 2 1 27 27 H 1.08995 * 109.47200 * 59.99625 * 7 5 4 28 28 H 1.09005 * 109.46884 * 179.97438 * 7 5 4 29 29 H 1.09004 * 109.47165 * 299.99657 * 7 5 4 30 30 H 1.00897 * 110.99542 * 31.05446 * 8 5 4 31 31 H 1.09001 * 109.47392 * 60.00807 * 9 8 5 32 32 H 1.09001 * 109.47520 * 300.00529 * 9 8 5 33 33 H 1.09001 * 109.47002 * 299.99782 * 10 9 8 34 34 H 1.08993 * 109.46955 * 60.00219 * 10 9 8 35 35 H 1.09001 * 109.47289 * 299.99953 * 11 10 9 36 36 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 37 37 H 0.96999 * 119.99910 * 179.97438 * 15 14 12 38 38 H 1.09006 * 109.47012 * 89.99990 * 21 20 4 39 39 H 1.09001 * 109.47458 * 210.00451 * 21 20 4 40 40 H 1.09002 * 109.46934 * 330.00370 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 4.6624 1.9481 -0.0012 6 1 5.5272 1.6424 0.5875 7 6 5.1002 2.2367 -1.4386 8 7 4.0750 3.1605 0.5845 9 6 5.1164 4.0327 1.1437 10 6 4.4675 5.2817 1.7437 11 6 5.5521 6.1904 2.3255 12 6 4.9131 7.4209 2.9159 13 1 3.8406 7.5425 2.8801 14 6 5.6976 8.3912 3.5027 15 7 7.0037 8.2429 3.5468 16 14 4.9054 9.9161 4.2352 17 1 4.5799 9.6677 5.6626 18 1 5.8468 11.0601 4.1339 19 1 3.6598 10.2326 3.4913 20 6 3.9751 -0.4478 -0.0061 21 6 5.3860 -0.9772 -0.0131 22 16 2.5209 -1.4372 -0.0006 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.8669 2.0894 0.0009 27 1 4.2353 2.5424 -2.0274 28 1 5.8408 3.0365 -1.4391 29 1 5.5360 1.3371 -1.8733 30 1 3.3854 2.9270 1.2830 31 1 5.8076 4.3260 0.3535 32 1 5.6601 3.4968 1.9216 33 1 3.9236 5.8178 0.9659 34 1 3.7765 4.9882 2.5338 35 1 6.0965 5.6546 3.1031 36 1 6.2429 6.4839 1.5350 37 1 7.5556 8.9256 3.9593 38 1 5.7300 -1.1083 1.0129 39 1 5.4116 -1.9363 -0.5303 40 1 6.0369 -0.2698 -0.5270 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:12 Heat of formation + Delta-G solvation = 1.521180 kcal Electronic energy + Delta-G solvation = -17634.625688 eV Core-core repulsion = 14960.740843 eV Total energy + Delta-G solvation = -2673.884845 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.27367 -36.12768 -33.94370 -33.06167 -31.51874 -29.53652 -29.16728 -26.08074 -24.97416 -23.54488 -21.93304 -20.98645 -20.05774 -18.10757 -17.12953 -16.31175 -15.67833 -15.16874 -14.61223 -14.43704 -14.14772 -13.69040 -13.53573 -13.34770 -13.15302 -13.04901 -12.60790 -12.20910 -12.14701 -11.99472 -11.77961 -11.69446 -11.37786 -11.24944 -11.06063 -10.81655 -10.61120 -10.47501 -10.43505 -9.66133 -9.30799 -9.02954 -8.50560 -8.38209 -8.31706 -8.14266 -5.96977 -3.98841 0.88981 1.50064 1.87310 2.63542 3.34078 3.40076 3.44031 4.39179 4.51206 4.66752 4.72186 5.00324 5.11735 5.21693 5.32600 5.33619 5.37112 5.38844 5.47411 5.59935 5.66634 5.78091 5.81258 5.84950 5.96369 6.00512 6.14120 6.26024 6.33216 6.41715 6.47539 6.75667 6.83451 7.17281 7.39933 7.66641 7.71921 7.87194 8.03760 8.47189 9.08419 9.64943 11.14519 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.029968 B = 0.003238 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.092181 B = 8646.234174 C = 9223.413982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.184 4.184 3 C -0.119 4.119 4 C -0.098 4.098 5 C 0.142 3.858 6 H 0.050 0.950 7 C -0.133 4.133 8 N -0.684 5.684 9 C 0.059 3.941 10 C -0.106 4.106 11 C 0.022 3.978 12 C -0.518 4.518 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.180 4.180 21 C -0.083 4.083 22 S 0.075 5.925 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.148 0.852 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.339 0.661 31 H 0.068 0.932 32 H 0.024 0.976 33 H 0.056 0.944 34 H 0.044 0.956 35 H 0.013 0.987 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.059 -20.790 -8.961 24.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.301 4.301 3 C -0.149 4.149 4 C -0.110 4.110 5 C 0.030 3.970 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.316 5.316 9 C -0.070 4.070 10 C -0.144 4.144 11 C -0.016 4.016 12 C -0.556 4.556 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.297 4.297 21 C -0.142 4.142 22 S 0.340 5.660 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.166 0.834 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.158 0.842 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.223 -21.943 -9.502 25.286 hybrid contribution 0.188 1.869 1.277 2.271 sum -8.035 -20.074 -8.225 23.134 Atomic orbital electron populations 1.20311 0.87910 1.03074 1.02601 1.24364 0.99751 0.95333 1.10607 1.19998 0.92167 0.99731 1.02966 1.18926 0.94888 0.93598 1.03636 1.20143 0.93148 0.86975 0.96726 0.93202 1.21753 1.01564 1.00854 0.94961 1.60690 1.16232 1.15793 1.38870 1.22182 0.93325 0.94235 0.97218 1.21615 0.99681 0.94284 0.98854 1.19063 0.93358 0.93466 0.95666 1.21265 0.93370 1.04040 1.36972 0.92683 1.25035 0.94831 0.98422 0.96268 1.69968 1.03827 1.34832 1.45014 0.86596 0.79190 0.82741 0.79498 1.20721 1.21251 1.19844 1.24169 0.98848 0.95757 1.10922 1.20357 0.89982 1.01131 1.02734 1.84063 0.96826 1.10064 1.75028 0.90909 0.91595 0.90368 0.83404 0.91953 0.92095 0.92962 0.84221 0.91385 0.95793 0.92544 0.93724 0.96851 0.96579 0.93062 0.90832 0.91458 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.38 36.00 0.37 -0.27 16 2 C -0.18 -1.97 6.51 -36.00 -0.23 -2.20 16 3 C -0.12 -1.42 8.88 -41.21 -0.37 -1.79 16 4 C -0.10 -1.21 4.81 -106.25 -0.51 -1.72 16 5 C 0.14 1.86 2.29 -68.86 -0.16 1.70 16 6 H 0.05 0.67 7.18 -51.93 -0.37 0.29 16 7 C -0.13 -1.63 9.34 37.16 0.35 -1.28 16 8 N -0.68 -10.22 5.77 -107.95 -0.62 -10.84 16 9 C 0.06 1.04 5.48 -3.82 -0.02 1.01 16 10 C -0.11 -2.24 5.41 -26.73 -0.14 -2.38 16 11 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 12 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 13 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 16 Si 0.89 21.95 29.54 -169.99 -5.02 16.92 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 C -0.18 -2.01 6.50 -36.00 -0.23 -2.24 16 21 C -0.08 -0.75 9.79 36.00 0.35 -0.40 16 22 S 0.08 0.78 23.31 -107.50 -2.51 -1.73 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.15 1.77 7.40 -52.49 -0.39 1.38 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.78 7.45 -51.93 -0.39 0.39 16 29 H 0.05 0.55 7.26 -51.93 -0.38 0.17 16 30 H 0.34 4.93 7.43 -39.29 -0.29 4.64 16 31 H 0.07 1.21 7.44 -51.93 -0.39 0.83 16 32 H 0.02 0.42 8.06 -51.93 -0.42 0.01 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.69 6.49 -51.93 -0.34 0.35 16 LS Contribution 338.35 15.07 5.10 5.10 Total: -1.00 -30.48 338.35 -10.19 -40.67 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.73 Total: -0.63 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -1.15 Total: -22.89 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.11 Total: -37.44 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.51 Total: -1.73 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.48 -10.19 -40.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.191 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds