Wall clock time and date at job start Mon Mar 30 2020 01:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33389 * 125.20441 * 2 1 4 4 C 1.38428 * 114.92202 * 180.02562 * 3 2 1 5 5 C 1.50697 * 122.54244 * 179.97438 * 4 3 2 6 6 H 1.08995 * 109.47618 * 145.02076 * 5 4 3 7 7 C 1.53003 * 109.46664 * 265.02195 * 5 4 3 8 8 N 1.46903 * 109.47082 * 25.01432 * 5 4 3 9 9 C 1.46898 * 110.99673 * 155.00305 * 8 5 4 10 10 C 1.53006 * 109.47006 * 180.02562 * 9 8 5 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47055 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00290 * 0.02562 * 12 11 10 14 14 C 1.37887 * 120.00079 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99685 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00129 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47011 * 90.00204 * 16 14 12 18 18 H 1.48498 * 109.47112 * 210.00472 * 16 14 12 19 19 H 1.48499 * 109.47134 * 330.00583 * 16 14 12 20 20 C 1.33390 * 114.92070 * 0.24236 * 4 3 2 21 21 C 1.50696 * 125.20748 * 179.75789 * 20 4 3 22 22 S 1.75881 * 125.20190 * 180.02562 * 2 1 3 23 23 H 1.08993 * 109.46977 * 89.99685 * 1 2 3 24 24 H 1.08992 * 109.47356 * 210.00324 * 1 2 3 25 25 H 1.09003 * 109.46843 * 330.00100 * 1 2 3 26 26 H 1.07998 * 122.53985 * 0.05543 * 3 2 1 27 27 H 1.08995 * 109.47200 * 59.99625 * 7 5 4 28 28 H 1.09005 * 109.46884 * 179.97438 * 7 5 4 29 29 H 1.09004 * 109.47165 * 299.99657 * 7 5 4 30 30 H 1.00897 * 110.99542 * 31.05446 * 8 5 4 31 31 H 1.09001 * 109.47392 * 60.00807 * 9 8 5 32 32 H 1.09001 * 109.47520 * 300.00529 * 9 8 5 33 33 H 1.09001 * 109.47002 * 299.99782 * 10 9 8 34 34 H 1.08993 * 109.46955 * 60.00219 * 10 9 8 35 35 H 1.09001 * 109.47289 * 299.99953 * 11 10 9 36 36 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 37 37 H 0.96999 * 119.99910 * 179.97438 * 15 14 12 38 38 H 1.09006 * 109.47012 * 89.99990 * 21 20 4 39 39 H 1.09001 * 109.47458 * 210.00451 * 21 20 4 40 40 H 1.09002 * 109.46934 * 330.00370 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 4.6624 1.9481 -0.0012 6 1 5.5272 1.6424 0.5875 7 6 5.1002 2.2367 -1.4386 8 7 4.0750 3.1605 0.5845 9 6 5.1164 4.0327 1.1437 10 6 4.4675 5.2817 1.7437 11 6 5.5521 6.1904 2.3255 12 6 4.9131 7.4209 2.9159 13 1 3.8406 7.5425 2.8801 14 6 5.6976 8.3912 3.5027 15 7 7.0037 8.2429 3.5468 16 14 4.9054 9.9161 4.2352 17 1 4.5799 9.6677 5.6626 18 1 5.8468 11.0601 4.1339 19 1 3.6598 10.2326 3.4913 20 6 3.9751 -0.4478 -0.0061 21 6 5.3860 -0.9772 -0.0131 22 16 2.5209 -1.4372 -0.0006 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.8669 2.0894 0.0009 27 1 4.2353 2.5424 -2.0274 28 1 5.8408 3.0365 -1.4391 29 1 5.5360 1.3371 -1.8733 30 1 3.3854 2.9270 1.2830 31 1 5.8076 4.3260 0.3535 32 1 5.6601 3.4968 1.9216 33 1 3.9236 5.8178 0.9659 34 1 3.7765 4.9882 2.5338 35 1 6.0965 5.6546 3.1031 36 1 6.2429 6.4839 1.5350 37 1 7.5556 8.9256 3.9593 38 1 5.7300 -1.1083 1.0129 39 1 5.4116 -1.9363 -0.5303 40 1 6.0369 -0.2698 -0.5270 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:12 Heat of formation + Delta-G solvation = -15.073327 kcal Electronic energy + Delta-G solvation = -17635.345280 eV Core-core repulsion = 14960.740843 eV Total energy + Delta-G solvation = -2674.604437 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.21676 -37.42862 -35.59646 -34.29944 -33.12209 -30.60017 -30.23802 -27.81967 -25.88089 -24.90746 -23.36131 -22.11419 -21.62400 -19.03625 -18.48818 -17.97045 -16.91349 -16.53270 -16.26063 -15.53472 -15.42021 -14.83320 -14.53110 -14.32926 -14.16188 -13.93937 -13.82121 -13.67994 -13.40582 -13.31060 -12.95340 -12.85584 -12.71425 -12.47050 -12.42112 -12.24090 -12.12375 -11.96718 -11.58496 -11.47196 -11.32460 -11.05928 -10.55032 -9.43332 -9.32209 -9.18127 -8.19900 -6.30887 0.05007 0.68866 1.03178 1.40210 1.41783 1.53173 1.74449 2.41369 3.13146 3.20853 3.80007 3.91662 4.16037 4.27535 4.28848 4.38443 4.41603 4.53310 4.55685 4.68656 4.71590 4.74501 4.78360 4.84303 4.95103 5.01574 5.05482 5.12669 5.13819 5.23739 5.29959 5.35968 5.44352 5.53060 5.61215 5.75498 5.86169 6.10986 6.27949 6.45730 6.85980 7.38254 8.92087 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.029968 B = 0.003238 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.092181 B = 8646.234174 C = 9223.413982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.186 4.186 3 C -0.139 4.139 4 C -0.114 4.114 5 C 0.145 3.855 6 H 0.048 0.952 7 C -0.129 4.129 8 N -0.682 5.682 9 C 0.073 3.927 10 C -0.091 4.091 11 C 0.026 3.974 12 C -0.543 4.543 13 H 0.059 0.941 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.263 1.263 20 C -0.186 4.186 21 C -0.085 4.085 22 S 0.097 5.903 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.142 0.858 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.343 0.657 31 H 0.064 0.936 32 H 0.021 0.979 33 H 0.053 0.947 34 H 0.048 0.952 35 H -0.010 1.010 36 H -0.008 1.008 37 H 0.264 0.736 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.336 -21.566 -9.080 25.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.303 4.303 3 C -0.168 4.168 4 C -0.126 4.126 5 C 0.033 3.967 6 H 0.066 0.934 7 C -0.187 4.187 8 N -0.314 5.314 9 C -0.056 4.056 10 C -0.129 4.129 11 C -0.012 4.012 12 C -0.581 4.581 13 H 0.077 0.923 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.790 3.210 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.187 1.187 20 C -0.304 4.304 21 C -0.144 4.144 22 S 0.362 5.638 23 H 0.102 0.898 24 H 0.096 0.904 25 H 0.101 0.899 26 H 0.160 0.840 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.161 0.839 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.008 0.992 36 H 0.010 0.990 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.513 -22.736 -9.630 26.460 hybrid contribution 0.585 2.031 1.295 2.479 sum -8.928 -20.705 -8.335 24.039 Atomic orbital electron populations 1.20413 0.86183 1.03879 1.03536 1.24728 1.01083 0.95200 1.09311 1.20018 0.92337 0.99962 1.04498 1.18871 0.94804 0.93726 1.05227 1.20127 0.93357 0.86403 0.96800 0.93367 1.21722 1.01078 1.01422 0.94497 1.60622 1.15438 1.16752 1.38541 1.21878 0.93524 0.93316 0.96881 1.21361 0.98043 0.94800 0.98713 1.18965 0.94133 0.93808 0.94294 1.21704 0.93810 1.05197 1.37420 0.92264 1.26004 0.95363 1.02000 0.96574 1.70099 1.05392 1.36154 1.45778 0.85433 0.78444 0.78243 0.78850 1.19722 1.20665 1.18741 1.24479 1.00219 0.95688 1.10019 1.20443 0.88767 1.01878 1.03290 1.83974 0.96065 1.09402 1.74370 0.89829 0.90439 0.89923 0.83989 0.92606 0.92944 0.91132 0.83864 0.91725 0.96083 0.92811 0.93293 0.99157 0.98961 0.92763 0.90383 0.89924 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 10.38 71.24 0.74 -0.42 16 2 C -0.19 -3.72 6.51 24.59 0.16 -3.56 16 3 C -0.14 -3.20 8.88 21.22 0.19 -3.01 16 4 C -0.11 -2.70 4.81 -20.92 -0.10 -2.80 16 5 C 0.14 3.69 2.29 44.17 0.10 3.79 16 6 H 0.05 1.25 7.18 -2.39 -0.02 1.24 16 7 C -0.13 -3.07 9.34 71.98 0.67 -2.39 16 8 N -0.68 -20.14 5.77 -495.44 -2.86 -23.01 16 9 C 0.07 2.58 5.48 86.31 0.47 3.06 16 10 C -0.09 -3.87 5.41 30.60 0.17 -3.71 16 11 C 0.03 1.39 4.97 29.85 0.15 1.54 16 12 C -0.54 -31.69 9.11 25.60 0.23 -31.45 16 13 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 14 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 15 N -0.93 -57.71 13.29 21.45 0.28 -57.43 16 16 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 20 C -0.19 -3.89 6.50 24.59 0.16 -3.73 16 21 C -0.09 -1.38 9.79 71.23 0.70 -0.69 16 22 S 0.10 1.82 23.31 -56.49 -1.32 0.50 16 23 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.14 3.36 7.40 -2.91 -0.02 3.34 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.05 1.32 7.45 -2.38 -0.02 1.30 16 29 H 0.07 1.39 7.26 -2.39 -0.02 1.38 16 30 H 0.34 9.82 7.43 -89.70 -0.67 9.15 16 31 H 0.06 2.33 7.44 -2.39 -0.02 2.31 16 32 H 0.02 0.75 8.06 -2.39 -0.02 0.73 16 33 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 35 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 36 H -0.01 -0.47 8.14 -2.38 -0.02 -0.48 16 37 H 0.26 15.25 8.31 -92.71 -0.77 14.47 16 38 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 1.27 6.49 -2.39 -0.02 1.26 16 Total: -1.00 -64.82 338.35 2.57 -62.25 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.34 Total: 13.78 kcal Atomic # 6 Polarization: -47.13 SS G_CDS: 4.10 Total: -43.03 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -2.58 Total: -80.43 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -1.32 Total: 0.50 kcal Total: -64.82 2.57 -62.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.174 kcal (2) G-P(sol) polarization free energy of solvation -64.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds