Wall clock time and date at job start Mon Mar 30 2020 00:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 111.00075 * 2 1 4 4 C 1.53000 * 109.47364 * 66.03783 * 3 2 1 5 5 C 1.50705 * 109.46861 * 180.02562 * 4 3 2 6 6 H 1.07999 * 120.00080 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99521 * 180.02562 * 5 4 3 8 8 N 1.31507 * 120.00291 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99652 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47040 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47308 * 120.00137 * 9 7 5 12 12 H 1.48499 * 109.47047 * 240.00086 * 9 7 5 13 13 C 1.46891 * 111.00283 * 236.03991 * 2 1 3 14 14 C 1.53001 * 109.47149 * 199.81085 * 13 2 1 15 15 O 1.42904 * 109.46835 * 65.10449 * 14 13 2 16 16 C 1.35954 * 116.99611 * 179.97438 * 15 14 13 17 17 C 1.38660 * 120.06687 * 359.97438 * 16 15 14 18 18 C 1.38185 * 119.97146 * 180.02562 * 17 16 15 19 19 C 1.38261 * 120.09446 * 0.02562 * 18 17 16 20 20 C 1.38261 * 120.12426 * 359.97438 * 19 18 17 21 21 C 1.38323 * 120.03172 * 0.02562 * 20 19 18 22 22 F 1.35099 * 120.04780 * 180.02562 * 21 20 19 23 23 H 1.08994 * 109.47361 * 177.98380 * 1 2 3 24 24 H 1.08998 * 109.47614 * 297.99234 * 1 2 3 25 25 H 1.09002 * 109.46701 * 57.98716 * 1 2 3 26 26 H 1.08998 * 109.47038 * 186.04555 * 3 2 1 27 27 H 1.09006 * 109.46936 * 306.04143 * 3 2 1 28 28 H 1.08997 * 109.47216 * 300.00127 * 4 3 2 29 29 H 1.08993 * 109.46802 * 60.00620 * 4 3 2 30 30 H 0.96999 * 119.99884 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47535 * 79.81189 * 13 2 1 32 32 H 1.08999 * 109.47142 * 319.81320 * 13 2 1 33 33 H 1.08993 * 109.47162 * 305.10575 * 14 13 2 34 34 H 1.09000 * 109.47123 * 185.09737 * 14 13 2 35 35 H 1.07997 * 120.01365 * 0.04506 * 17 16 15 36 36 H 1.07993 * 119.94795 * 180.27543 * 18 17 16 37 37 H 1.07994 * 119.93781 * 179.97438 * 19 18 17 38 38 H 1.07999 * 119.97773 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0576 1.3182 5 6 2.1710 3.4647 1.3178 6 1 2.7185 3.8329 0.4627 7 6 1.9657 4.2820 2.4091 8 7 1.2995 3.8334 3.4504 9 14 2.6339 6.0264 2.4084 10 1 3.3403 6.2853 1.1281 11 1 1.5110 6.9867 2.5566 12 1 3.5812 6.1940 3.5396 13 6 1.9955 -0.7660 -1.1374 14 6 3.4453 -1.1658 -0.8558 15 8 3.4843 -2.0655 0.2538 16 6 4.7069 -2.5206 0.6366 17 6 5.8445 -2.1102 -0.0416 18 6 7.0861 -2.5744 0.3489 19 6 7.1959 -3.4480 1.4148 20 6 6.0641 -3.8598 2.0939 21 6 4.8187 -3.3984 1.7074 22 9 3.7126 -3.8001 2.3711 23 1 -0.3634 -1.0270 -0.0362 24 1 -0.3634 0.4823 0.9074 25 1 -0.3633 0.5448 -0.8714 26 1 3.0798 1.3444 -0.1082 27 1 1.5612 1.9273 -0.8310 28 1 0.5471 2.0846 1.4263 29 1 2.0657 1.5018 2.1491 30 1 1.1554 4.4083 4.2183 31 1 1.9561 -0.1530 -2.0379 32 1 1.3928 -1.6627 -1.2817 33 1 4.0289 -0.2754 -0.6222 34 1 3.8647 -1.6549 -1.7350 35 1 5.7603 -1.4279 -0.8745 36 1 7.9723 -2.2510 -0.1768 37 1 8.1674 -3.8095 1.7176 38 1 6.1526 -4.5420 2.9265 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053421521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:46 Heat of formation + Delta-G solvation = -57.064732 kcal Electronic energy + Delta-G solvation = -19958.170094 eV Core-core repulsion = 16715.531597 eV Total energy + Delta-G solvation = -3242.638497 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.62756 -39.95127 -37.82885 -36.68875 -33.08477 -30.96421 -30.71957 -29.63120 -28.77023 -25.59717 -24.41831 -22.79526 -22.44654 -21.31311 -19.76942 -18.40895 -17.03209 -16.58877 -16.42743 -16.13403 -15.30400 -15.13603 -14.58447 -14.51149 -14.36277 -14.33701 -13.82338 -13.38750 -12.76955 -12.67371 -12.35196 -12.15909 -11.97352 -11.81896 -11.44982 -11.27704 -11.09367 -10.97363 -10.84491 -10.67437 -10.49989 -9.80664 -9.37704 -9.08878 -8.99663 -8.32004 -8.14329 -7.71716 -5.97808 -4.00525 1.07624 1.24817 3.17489 3.31575 3.38847 3.42301 3.54588 4.27142 4.34634 4.52008 4.65940 4.75514 5.03662 5.12237 5.15870 5.21407 5.36439 5.38064 5.42751 5.62249 5.81165 5.84048 5.93166 5.97303 6.00725 6.12345 6.25055 6.30443 6.41157 6.52458 6.64010 6.97098 7.39160 7.51549 7.56413 7.79907 7.91714 8.10922 8.44612 9.07059 9.63015 11.13630 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017357 B = 0.004495 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.815636 B = 6227.910867 C = 6864.415186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.538 5.538 3 C 0.060 3.940 4 C 0.028 3.972 5 C -0.522 4.522 6 H 0.053 0.947 7 C 0.059 3.941 8 N -0.892 5.892 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.054 3.946 14 C 0.065 3.935 15 O -0.285 6.285 16 C 0.109 3.891 17 C -0.187 4.187 18 C -0.090 4.090 19 C -0.139 4.139 20 C -0.118 4.118 21 C 0.066 3.934 22 F -0.131 7.131 23 H 0.056 0.944 24 H 0.079 0.921 25 H 0.018 0.982 26 H 0.058 0.942 27 H 0.020 0.980 28 H 0.018 0.982 29 H 0.025 0.975 30 H 0.260 0.740 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.876 -14.953 -8.780 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.262 5.262 3 C -0.066 4.066 4 C -0.010 4.010 5 C -0.561 4.561 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.531 5.531 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 C -0.075 4.075 14 C -0.010 4.010 15 O -0.198 6.198 16 C 0.062 3.938 17 C -0.206 4.206 18 C -0.108 4.108 19 C -0.157 4.157 20 C -0.137 4.137 21 C 0.046 3.954 22 F -0.110 7.110 23 H 0.075 0.925 24 H 0.097 0.903 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.038 0.962 28 H 0.036 0.964 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.154 0.846 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.710 -15.175 -8.083 19.274 hybrid contribution 0.040 1.522 -0.660 1.659 sum 8.750 -13.654 -8.742 18.423 Atomic orbital electron populations 1.22350 0.87503 1.00530 1.01420 1.62047 1.07814 1.15886 1.40438 1.22427 0.98378 0.85191 1.00618 1.19086 0.96989 0.93979 0.90916 1.21220 1.35196 0.97774 1.01910 0.92837 1.24991 0.95299 0.98426 0.95561 1.69983 1.40828 1.36297 1.05982 0.86559 0.78753 0.84847 0.77964 1.19811 1.21023 1.20969 1.22104 0.93811 0.98518 0.93029 1.22993 0.99051 0.92209 0.86784 1.86278 1.24365 1.59947 1.49161 1.19142 0.86245 0.94384 0.94032 1.21202 0.91915 1.04496 1.03018 1.20988 0.96922 0.96346 0.96590 1.20858 0.98052 0.99840 0.96981 1.20998 0.90358 1.01207 1.01127 1.17030 0.83735 1.00607 0.94059 1.91513 1.51195 1.89123 1.79161 0.92490 0.90270 0.96382 0.92400 0.96167 0.96401 0.95679 0.93038 0.92838 0.90408 0.91251 0.92090 0.84614 0.85309 0.85155 0.84334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.25 60.07 0.56 1.08 16 2 N -0.54 -10.10 4.64 -242.92 -1.13 -11.22 16 3 C 0.06 1.29 4.72 -3.82 -0.02 1.27 16 4 C 0.03 0.74 4.90 -27.88 -0.14 0.60 16 5 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 6 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -27.30 13.29 55.43 0.74 -26.57 16 9 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.05 0.78 5.39 -3.83 -0.02 0.76 16 14 C 0.07 0.90 4.93 37.16 0.18 1.08 16 15 O -0.29 -4.75 9.95 -19.60 -0.19 -4.94 16 16 C 0.11 1.64 6.69 -39.18 -0.26 1.38 16 17 C -0.19 -2.27 9.04 -39.45 -0.36 -2.63 16 18 C -0.09 -0.91 10.04 -39.59 -0.40 -1.31 16 19 C -0.14 -1.37 10.04 -39.56 -0.40 -1.76 16 20 C -0.12 -1.36 10.02 -39.54 -0.40 -1.75 16 21 C 0.07 0.97 7.31 -39.30 -0.29 0.69 16 22 F -0.13 -2.20 17.11 2.25 0.04 -2.16 16 23 H 0.06 0.85 7.93 -51.93 -0.41 0.44 16 24 H 0.08 1.53 6.57 -51.93 -0.34 1.19 16 25 H 0.02 0.29 8.13 -51.93 -0.42 -0.13 16 26 H 0.06 1.21 6.57 -51.93 -0.34 0.86 16 27 H 0.02 0.42 8.11 -51.93 -0.42 0.00 16 28 H 0.02 0.50 6.60 -51.93 -0.34 0.15 16 29 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 31 H 0.05 0.69 8.00 -51.93 -0.42 0.28 16 32 H 0.08 1.04 7.80 -51.93 -0.40 0.63 16 33 H 0.07 1.01 6.19 -51.93 -0.32 0.68 16 34 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 35 H 0.14 1.41 6.30 -52.49 -0.33 1.08 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 320.95 15.07 4.84 4.84 Total: -1.00 -32.74 320.95 -8.06 -40.80 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -5.38 Total: -3.28 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -1.94 Total: -14.28 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.39 Total: -37.79 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.19 Total: -4.94 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.74 -8.06 -40.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053421521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.263 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds