Wall clock time and date at job start Mon Mar 30 2020 00:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 111.00075 * 2 1 4 4 C 1.53000 * 109.47364 * 66.03783 * 3 2 1 5 5 C 1.50705 * 109.46861 * 180.02562 * 4 3 2 6 6 H 1.07999 * 120.00080 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99521 * 180.02562 * 5 4 3 8 8 N 1.31507 * 120.00291 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99652 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47040 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47308 * 120.00137 * 9 7 5 12 12 H 1.48499 * 109.47047 * 240.00086 * 9 7 5 13 13 C 1.46891 * 111.00283 * 236.03991 * 2 1 3 14 14 C 1.53001 * 109.47149 * 199.81085 * 13 2 1 15 15 O 1.42904 * 109.46835 * 65.10449 * 14 13 2 16 16 C 1.35954 * 116.99611 * 179.97438 * 15 14 13 17 17 C 1.38660 * 120.06687 * 359.97438 * 16 15 14 18 18 C 1.38185 * 119.97146 * 180.02562 * 17 16 15 19 19 C 1.38261 * 120.09446 * 0.02562 * 18 17 16 20 20 C 1.38261 * 120.12426 * 359.97438 * 19 18 17 21 21 C 1.38323 * 120.03172 * 0.02562 * 20 19 18 22 22 F 1.35099 * 120.04780 * 180.02562 * 21 20 19 23 23 H 1.08994 * 109.47361 * 177.98380 * 1 2 3 24 24 H 1.08998 * 109.47614 * 297.99234 * 1 2 3 25 25 H 1.09002 * 109.46701 * 57.98716 * 1 2 3 26 26 H 1.08998 * 109.47038 * 186.04555 * 3 2 1 27 27 H 1.09006 * 109.46936 * 306.04143 * 3 2 1 28 28 H 1.08997 * 109.47216 * 300.00127 * 4 3 2 29 29 H 1.08993 * 109.46802 * 60.00620 * 4 3 2 30 30 H 0.96999 * 119.99884 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47535 * 79.81189 * 13 2 1 32 32 H 1.08999 * 109.47142 * 319.81320 * 13 2 1 33 33 H 1.08993 * 109.47162 * 305.10575 * 14 13 2 34 34 H 1.09000 * 109.47123 * 185.09737 * 14 13 2 35 35 H 1.07997 * 120.01365 * 0.04506 * 17 16 15 36 36 H 1.07993 * 119.94795 * 180.27543 * 18 17 16 37 37 H 1.07994 * 119.93781 * 179.97438 * 19 18 17 38 38 H 1.07999 * 119.97773 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0576 1.3182 5 6 2.1710 3.4647 1.3178 6 1 2.7185 3.8329 0.4627 7 6 1.9657 4.2820 2.4091 8 7 1.2995 3.8334 3.4504 9 14 2.6339 6.0264 2.4084 10 1 3.3403 6.2853 1.1281 11 1 1.5110 6.9867 2.5566 12 1 3.5812 6.1940 3.5396 13 6 1.9955 -0.7660 -1.1374 14 6 3.4453 -1.1658 -0.8558 15 8 3.4843 -2.0655 0.2538 16 6 4.7069 -2.5206 0.6366 17 6 5.8445 -2.1102 -0.0416 18 6 7.0861 -2.5744 0.3489 19 6 7.1959 -3.4480 1.4148 20 6 6.0641 -3.8598 2.0939 21 6 4.8187 -3.3984 1.7074 22 9 3.7126 -3.8001 2.3711 23 1 -0.3634 -1.0270 -0.0362 24 1 -0.3634 0.4823 0.9074 25 1 -0.3633 0.5448 -0.8714 26 1 3.0798 1.3444 -0.1082 27 1 1.5612 1.9273 -0.8310 28 1 0.5471 2.0846 1.4263 29 1 2.0657 1.5018 2.1491 30 1 1.1554 4.4083 4.2183 31 1 1.9561 -0.1530 -2.0379 32 1 1.3928 -1.6627 -1.2817 33 1 4.0289 -0.2754 -0.6222 34 1 3.8647 -1.6549 -1.7350 35 1 5.7603 -1.4279 -0.8745 36 1 7.9723 -2.2510 -0.1768 37 1 8.1674 -3.8095 1.7176 38 1 6.1526 -4.5420 2.9265 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053421521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:45 Heat of formation + Delta-G solvation = -78.164476 kcal Electronic energy + Delta-G solvation = -19959.085047 eV Core-core repulsion = 16715.531597 eV Total energy + Delta-G solvation = -3243.553451 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.77711 -40.96055 -39.01615 -37.95188 -35.20340 -32.39159 -31.62682 -31.15374 -29.94916 -27.37395 -25.86143 -24.13072 -23.39270 -22.72364 -21.33869 -19.43515 -18.61092 -18.00638 -17.54635 -17.39751 -16.62497 -16.49654 -16.16158 -15.79503 -15.71647 -15.30113 -15.22154 -14.69978 -14.26703 -14.10718 -13.75364 -13.44750 -13.32981 -13.06598 -12.90757 -12.73282 -12.61393 -12.39266 -12.33529 -12.00048 -11.89890 -11.61809 -11.33842 -11.20515 -10.56366 -9.90093 -9.16802 -9.12782 -8.20838 -6.33084 0.17035 0.33485 1.39088 1.40068 1.53234 2.17936 2.39375 2.65814 3.06300 3.12613 3.31610 3.75763 3.90155 4.02195 4.13357 4.22192 4.29922 4.36379 4.40710 4.42875 4.47961 4.64047 4.68149 4.75768 4.79520 5.02023 5.03946 5.10918 5.14712 5.29576 5.44321 5.45749 5.62990 5.75759 5.79637 6.07974 6.25687 6.31395 6.44584 6.85002 7.36510 8.91910 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017357 B = 0.004495 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.815636 B = 6227.910867 C = 6864.415186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.561 5.561 3 C 0.079 3.921 4 C 0.035 3.965 5 C -0.543 4.543 6 H 0.063 0.937 7 C -0.001 4.001 8 N -0.934 5.934 9 Si 0.969 3.031 10 H -0.258 1.258 11 H -0.277 1.277 12 H -0.279 1.279 13 C 0.054 3.946 14 C 0.064 3.936 15 O -0.319 6.319 16 C 0.079 3.921 17 C -0.193 4.193 18 C -0.084 4.084 19 C -0.130 4.130 20 C -0.118 4.118 21 C 0.022 3.978 22 F -0.155 7.155 23 H 0.080 0.920 24 H 0.045 0.955 25 H 0.032 0.968 26 H 0.062 0.938 27 H 0.028 0.972 28 H -0.007 1.007 29 H -0.018 1.018 30 H 0.263 0.737 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.152 0.848 36 H 0.165 0.835 37 H 0.168 0.832 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.322 -14.699 -10.664 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.286 5.286 3 C -0.048 4.048 4 C -0.002 4.002 5 C -0.581 4.581 6 H 0.081 0.919 7 C -0.199 4.199 8 N -0.574 5.574 9 Si 0.793 3.207 10 H -0.182 1.182 11 H -0.203 1.203 12 H -0.205 1.205 13 C -0.074 4.074 14 C -0.011 4.011 15 O -0.233 6.233 16 C 0.032 3.968 17 C -0.211 4.211 18 C -0.102 4.102 19 C -0.148 4.148 20 C -0.137 4.137 21 C 0.003 3.997 22 F -0.134 7.134 23 H 0.099 0.901 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.081 0.919 27 H 0.046 0.954 28 H 0.012 0.988 29 H 0.000 1.000 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.169 0.831 36 H 0.182 0.818 37 H 0.186 0.814 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 11.164 -14.939 -9.990 21.157 hybrid contribution -0.664 1.355 -0.063 1.510 sum 10.499 -13.584 -10.053 19.895 Atomic orbital electron populations 1.22298 0.86943 1.01850 1.00361 1.61919 1.08604 1.14494 1.43536 1.22031 0.98738 0.86586 0.97446 1.18914 0.94976 0.93790 0.92547 1.21657 1.35326 0.98715 1.02418 0.91857 1.26018 0.95388 1.03475 0.94978 1.70138 1.42166 1.38297 1.06841 0.85350 0.78187 0.78614 0.78590 1.18182 1.20299 1.20459 1.22246 0.94381 0.98603 0.92135 1.23107 0.98507 0.91927 0.87584 1.86212 1.25873 1.60746 1.50440 1.19483 0.86667 0.95522 0.95113 1.21490 0.91815 1.04619 1.03202 1.21481 0.97255 0.95178 0.96276 1.21353 0.98886 0.98626 0.95973 1.21345 0.89614 1.01045 1.01657 1.17620 0.84339 1.02557 0.95233 1.91436 1.52582 1.89591 1.79777 0.90124 0.93587 0.94937 0.91917 0.95411 0.98820 0.99950 0.92794 0.90455 0.89003 0.92394 0.88403 0.83087 0.81764 0.81433 0.82435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.17 9.25 127.69 1.18 2.35 16 2 N -0.56 -21.22 4.64 -922.46 -4.28 -25.50 16 3 C 0.08 3.42 4.72 86.30 0.41 3.83 16 4 C 0.04 1.96 4.90 29.85 0.15 2.11 16 5 C -0.54 -31.66 9.11 25.60 0.23 -31.42 16 6 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 8 N -0.93 -58.88 13.29 21.45 0.28 -58.59 16 9 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 10 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 13 C 0.05 1.49 5.39 86.31 0.46 1.95 16 14 C 0.06 1.69 4.93 71.98 0.36 2.05 16 15 O -0.32 -10.83 9.95 -93.03 -0.93 -11.76 16 16 C 0.08 2.39 6.69 22.53 0.15 2.54 16 17 C -0.19 -4.35 9.04 22.36 0.20 -4.15 16 18 C -0.08 -1.43 10.04 22.26 0.22 -1.20 16 19 C -0.13 -2.15 10.04 22.28 0.22 -1.93 16 20 C -0.12 -2.59 10.02 22.30 0.22 -2.37 16 21 C 0.02 0.68 7.31 22.45 0.16 0.84 16 22 F -0.15 -5.54 17.11 44.97 0.77 -4.77 16 23 H 0.08 2.38 7.93 -2.39 -0.02 2.36 16 24 H 0.05 1.88 6.57 -2.39 -0.02 1.86 16 25 H 0.03 1.02 8.13 -2.39 -0.02 1.00 16 26 H 0.06 2.62 6.57 -2.39 -0.02 2.60 16 27 H 0.03 1.15 8.11 -2.38 -0.02 1.13 16 28 H -0.01 -0.39 6.60 -2.39 -0.02 -0.40 16 29 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 30 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 31 H 0.08 1.79 8.00 -2.39 -0.02 1.77 16 32 H 0.09 2.28 7.80 -2.39 -0.02 2.26 16 33 H 0.06 1.64 6.19 -2.39 -0.01 1.62 16 34 H 0.10 1.82 7.66 -2.39 -0.02 1.80 16 35 H 0.15 2.80 6.30 -2.91 -0.02 2.78 16 36 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 38 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -74.74 320.95 3.36 -71.38 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 1.04 Total: 7.35 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 4.44 Total: -25.00 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -4.00 Total: -84.09 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -0.93 Total: -11.76 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.77 Total: -4.77 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -74.74 3.36 -71.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053421521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.785 kcal (2) G-P(sol) polarization free energy of solvation -74.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds