Wall clock time and date at job start Mon Mar 30 2020 00:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00089 * 2 1 4 4 C 1.52997 * 109.47482 * 66.04415 * 3 2 1 5 5 C 1.50697 * 109.47251 * 180.02562 * 4 3 2 6 6 H 1.07996 * 120.00089 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99658 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00401 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99477 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47300 * 59.99692 * 9 7 5 11 11 H 1.48506 * 109.46943 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47134 * 299.99120 * 9 7 5 13 13 C 1.46896 * 111.00288 * 236.04295 * 2 1 3 14 14 C 1.53000 * 109.47570 * 199.81046 * 13 2 1 15 15 O 1.42910 * 109.46969 * 65.10031 * 14 13 2 16 16 C 1.35938 * 116.99633 * 180.02562 * 15 14 13 17 17 C 1.38706 * 120.03587 * 0.27963 * 16 15 14 18 18 C 1.38157 * 119.97450 * 180.25145 * 17 16 15 19 19 C 1.38454 * 120.02497 * 359.47056 * 18 17 16 20 20 F 1.35099 * 119.97079 * 180.30077 * 19 18 17 21 21 C 1.38455 * 120.06144 * 0.27495 * 19 18 17 22 22 C 1.38146 * 120.03058 * 359.97438 * 21 19 18 23 23 H 1.09002 * 109.47049 * 177.98617 * 1 2 3 24 24 H 1.08998 * 109.46650 * 297.98380 * 1 2 3 25 25 H 1.08996 * 109.46858 * 57.98798 * 1 2 3 26 26 H 1.09006 * 109.47295 * 186.04436 * 3 2 1 27 27 H 1.09004 * 109.47155 * 306.04314 * 3 2 1 28 28 H 1.09006 * 109.46873 * 300.00279 * 4 3 2 29 29 H 1.09004 * 109.47009 * 59.99809 * 4 3 2 30 30 H 0.97000 * 120.00021 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.47528 * 79.81067 * 13 2 1 32 32 H 1.09008 * 109.47102 * 319.80748 * 13 2 1 33 33 H 1.09000 * 109.46795 * 305.10395 * 14 13 2 34 34 H 1.08997 * 109.47630 * 185.10113 * 14 13 2 35 35 H 1.08007 * 120.01812 * 0.02562 * 17 16 15 36 36 H 1.07993 * 119.98465 * 179.74778 * 18 17 16 37 37 H 1.08001 * 119.98559 * 180.02562 * 21 19 18 38 38 H 1.08004 * 120.01563 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1711 3.4646 1.3179 6 1 2.7191 3.8325 0.4632 7 6 1.9658 4.2818 2.4093 8 7 1.2989 3.8335 3.4503 9 14 2.6353 6.0258 2.4091 10 1 2.0433 6.7832 1.2773 11 1 2.2819 6.6917 3.6886 12 1 4.1125 5.9889 2.2613 13 6 1.9955 -0.7660 -1.1375 14 6 3.4453 -1.1658 -0.8560 15 8 3.4844 -2.0656 0.2536 16 6 4.7069 -2.5198 0.6370 17 6 5.8452 -2.1031 -0.0374 18 6 7.0866 -2.5696 0.3500 19 6 7.1958 -3.4440 1.4179 20 9 8.4108 -3.8947 1.7996 21 6 6.0610 -3.8566 2.0953 22 6 4.8180 -3.3958 1.7067 23 1 -0.3633 -1.0271 -0.0361 24 1 -0.3632 0.4822 0.9075 25 1 -0.3633 0.5447 -0.8714 26 1 3.0798 1.3444 -0.1082 27 1 1.5612 1.9273 -0.8310 28 1 0.5472 2.0845 1.4264 29 1 2.0658 1.5016 2.1491 30 1 1.1542 4.4086 4.2179 31 1 1.9560 -0.1530 -2.0379 32 1 1.3928 -1.6628 -1.2818 33 1 4.0289 -0.2753 -0.6224 34 1 3.8647 -1.6548 -1.7352 35 1 5.7608 -1.4171 -0.8674 36 1 7.9725 -2.2485 -0.1775 37 1 6.1476 -4.5385 2.9284 38 1 3.9329 -3.7175 2.2356 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057951757.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:49 Heat of formation + Delta-G solvation = -78.184874 kcal Electronic energy + Delta-G solvation = -19655.777820 eV Core-core repulsion = 16412.223485 eV Total energy + Delta-G solvation = -3243.554335 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.79978 -41.03754 -38.95560 -37.77654 -35.17602 -32.46105 -32.06129 -30.92116 -29.70300 -27.33576 -25.80603 -24.23521 -23.41824 -22.68215 -21.30891 -19.29872 -18.58849 -18.29734 -17.54276 -17.23584 -16.56870 -16.49871 -16.08516 -15.83923 -15.64310 -15.28334 -14.89385 -14.55366 -14.33120 -14.11432 -13.97487 -13.49190 -13.40104 -13.27131 -12.99218 -12.84272 -12.56309 -12.40294 -12.32712 -11.86808 -11.70893 -11.54334 -11.29842 -11.20078 -10.53093 -10.15927 -9.13424 -9.04041 -8.19275 -6.30965 0.19266 0.24393 1.39966 1.43181 1.51016 2.27742 2.40506 2.60782 3.10130 3.14156 3.34813 3.71860 3.84162 3.99886 4.11666 4.18762 4.29148 4.35502 4.45057 4.46841 4.52231 4.68828 4.73362 4.80565 4.84509 4.93264 5.06692 5.13703 5.14866 5.17128 5.28536 5.46433 5.66557 5.74755 5.80256 6.10645 6.29477 6.34151 6.50667 6.86816 7.38309 8.92739 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016514 B = 0.004178 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.140780 B = 6700.437564 C = 7740.846859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.557 5.557 3 C 0.078 3.922 4 C 0.036 3.964 5 C -0.545 4.545 6 H 0.061 0.939 7 C 0.002 3.998 8 N -0.932 5.932 9 Si 0.965 3.035 10 H -0.265 1.265 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.054 3.946 14 C 0.062 3.938 15 O -0.312 6.312 16 C 0.113 3.887 17 C -0.188 4.188 18 C -0.112 4.112 19 C 0.033 3.967 20 F -0.149 7.149 21 C -0.111 4.111 22 C -0.138 4.138 23 H 0.084 0.916 24 H 0.046 0.954 25 H 0.029 0.971 26 H 0.062 0.938 27 H 0.025 0.975 28 H -0.006 1.006 29 H -0.014 1.014 30 H 0.263 0.737 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.160 0.840 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.546 -14.820 -10.098 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.281 5.281 3 C -0.049 4.049 4 C -0.001 4.001 5 C -0.584 4.584 6 H 0.080 0.920 7 C -0.196 4.196 8 N -0.572 5.572 9 Si 0.789 3.211 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.192 1.192 13 C -0.074 4.074 14 C -0.013 4.013 15 O -0.225 6.225 16 C 0.067 3.933 17 C -0.207 4.207 18 C -0.131 4.131 19 C 0.014 3.986 20 F -0.128 7.128 21 C -0.129 4.129 22 C -0.157 4.157 23 H 0.102 0.898 24 H 0.064 0.936 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.043 0.957 28 H 0.012 0.988 29 H 0.004 0.996 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.171 0.829 36 H 0.174 0.826 37 H 0.178 0.822 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.479 -15.061 -9.425 19.277 hybrid contribution 0.179 1.426 -0.227 1.455 sum 7.658 -13.635 -9.652 18.377 Atomic orbital electron populations 1.22313 0.86957 1.02003 1.00261 1.61937 1.08529 1.14262 1.43391 1.22028 0.98724 0.86771 0.97364 1.18902 0.94989 0.93605 0.92645 1.21613 1.35437 0.98961 1.02373 0.92041 1.25964 0.95398 1.03235 0.95029 1.70110 1.42007 1.38314 1.06785 0.85512 0.79084 0.78926 0.77582 1.18965 1.20911 1.19187 1.22250 0.94436 0.98692 0.92014 1.23079 0.98400 0.92026 0.87808 1.86186 1.25969 1.60373 1.49991 1.19404 0.85062 0.94198 0.94644 1.21351 0.91324 1.04383 1.03647 1.21166 0.99124 0.96565 0.96231 1.17772 0.80458 1.01346 0.99017 1.91458 1.42289 1.88163 1.90921 1.21151 0.90185 1.00916 1.00672 1.20506 0.98591 0.99402 0.97188 0.89769 0.93558 0.95275 0.91956 0.95697 0.98768 0.99586 0.92805 0.90921 0.88579 0.92640 0.88594 0.82937 0.82649 0.82239 0.83553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.05 9.25 127.69 1.18 2.24 16 2 N -0.56 -19.50 4.64 -922.46 -4.28 -23.78 16 3 C 0.08 3.25 4.72 86.30 0.41 3.66 16 4 C 0.04 1.95 4.90 29.85 0.15 2.09 16 5 C -0.55 -31.26 9.11 25.60 0.23 -31.02 16 6 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 7 C 0.00 0.10 5.46 84.66 0.46 0.56 16 8 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 9 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 10 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 13 C 0.05 1.34 5.39 86.30 0.46 1.80 16 14 C 0.06 1.48 4.93 71.98 0.36 1.83 16 15 O -0.31 -9.02 10.09 -92.85 -0.94 -9.95 16 16 C 0.11 2.98 6.69 22.49 0.15 3.14 16 17 C -0.19 -4.25 9.04 22.36 0.20 -4.05 16 18 C -0.11 -2.40 10.02 22.30 0.22 -2.17 16 19 C 0.03 0.77 7.30 22.37 0.16 0.93 16 20 F -0.15 -3.57 17.27 44.97 0.78 -2.80 16 21 C -0.11 -2.42 10.02 22.30 0.22 -2.19 16 22 C -0.14 -3.36 9.98 22.36 0.22 -3.14 16 23 H 0.08 2.22 7.93 -2.39 -0.02 2.20 16 24 H 0.05 1.77 6.57 -2.39 -0.02 1.76 16 25 H 0.03 0.86 8.12 -2.39 -0.02 0.84 16 26 H 0.06 2.50 6.57 -2.38 -0.02 2.49 16 27 H 0.02 1.00 8.11 -2.39 -0.02 0.98 16 28 H -0.01 -0.35 6.60 -2.38 -0.02 -0.36 16 29 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 30 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 31 H 0.07 1.56 8.00 -2.39 -0.02 1.54 16 32 H 0.10 2.07 7.80 -2.38 -0.02 2.05 16 33 H 0.06 1.46 6.17 -2.39 -0.01 1.45 16 34 H 0.10 1.59 7.67 -2.39 -0.02 1.57 16 35 H 0.15 2.82 6.30 -2.91 -0.02 2.80 16 36 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 37 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -68.54 321.14 3.35 -65.19 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 1.04 Total: 8.67 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: 4.44 Total: -26.32 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -4.00 Total: -81.16 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.94 Total: -9.95 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.78 Total: -2.80 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -68.54 3.35 -65.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057951757.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.997 kcal (2) G-P(sol) polarization free energy of solvation -68.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds