Wall clock time and date at job start Mon Mar 30 2020 00:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36939 * 120.00380 * 2 1 4 4 H 1.07995 * 120.00856 * 174.22898 * 3 2 1 5 5 C 1.38813 * 119.99187 * 354.23316 * 3 2 1 6 6 N 1.31620 * 120.00345 * 5.10620 * 5 3 2 7 7 Si 1.86807 * 119.99823 * 185.10979 * 5 3 2 8 8 H 1.48505 * 109.46958 * 94.99164 * 7 5 3 9 9 H 1.48498 * 109.47199 * 214.99592 * 7 5 3 10 10 H 1.48495 * 109.46929 * 334.99854 * 7 5 3 11 11 C 1.46500 * 120.00105 * 179.97438 * 2 1 3 12 12 C 1.50697 * 109.47444 * 274.61708 * 11 2 1 13 13 C 1.38038 * 120.06137 * 5.15738 * 12 11 2 14 14 C 1.38296 * 120.12126 * 179.72437 * 13 12 11 15 15 C 1.38348 * 120.24461 * 0.26887 * 14 13 12 16 16 C 1.37988 * 120.11966 * 0.03100 * 15 14 13 17 17 C 1.39319 * 120.06168 * 185.45138 * 12 11 2 18 18 C 1.48387 * 120.12402 * 0.02562 * 17 12 11 19 19 C 1.39343 * 120.11736 * 303.55918 * 18 17 12 20 20 C 1.38020 * 119.87283 * 179.74423 * 19 18 17 21 21 C 1.38324 * 120.12520 * 0.50201 * 20 19 18 22 22 C 1.38325 * 120.23917 * 359.77678 * 21 20 19 23 23 C 1.38015 * 120.12111 * 359.96644 * 22 21 20 24 24 H 1.09004 * 109.46778 * 184.64263 * 1 2 3 25 25 H 1.09003 * 109.47635 * 304.63757 * 1 2 3 26 26 H 1.08999 * 109.47396 * 64.64288 * 1 2 3 27 27 H 0.97004 * 119.99561 * 180.02562 * 6 5 3 28 28 H 1.09008 * 109.47246 * 154.61602 * 11 2 1 29 29 H 1.08999 * 109.47294 * 34.62249 * 11 2 1 30 30 H 1.07995 * 119.94047 * 359.97438 * 13 12 11 31 31 H 1.08002 * 119.87995 * 180.25708 * 14 13 12 32 32 H 1.08000 * 119.93752 * 180.02562 * 15 14 13 33 33 H 1.08005 * 120.06021 * 179.97438 * 16 15 14 34 34 H 1.07997 * 120.06402 * 359.97438 * 19 18 17 35 35 H 1.08006 * 119.93892 * 180.23675 * 20 19 18 36 36 H 1.07998 * 119.88120 * 179.74441 * 21 20 19 37 37 H 1.08003 * 119.93748 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.05653 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2255 1.1883 0.0940 5 6 1.4608 2.3849 -0.1208 6 7 0.1447 2.3894 -0.1342 7 14 2.4018 3.9923 -0.2645 8 1 2.5594 4.3471 -1.6979 9 1 1.6526 5.0685 0.4324 10 1 3.7414 3.8390 0.3576 11 6 2.1974 -1.2687 0.0006 12 6 2.3496 -1.7604 1.4169 13 6 1.7382 -1.0838 2.4532 14 6 1.8723 -1.5371 3.7528 15 6 2.6237 -2.6669 4.0227 16 6 3.2444 -3.3475 2.9952 17 6 3.1127 -2.8951 1.6836 18 6 3.7782 -3.6225 0.5747 19 6 3.0275 -4.1024 -0.4966 20 6 3.6524 -4.7737 -1.5280 21 6 5.0198 -4.9795 -1.4945 22 6 5.7691 -4.5103 -0.4306 23 6 5.1552 -3.8331 0.6035 24 1 -0.3633 -1.0244 0.0832 25 1 -0.3634 0.5841 0.8455 26 1 -0.3634 0.4401 -0.9286 27 1 -0.3366 3.2274 -0.2190 28 1 3.1832 -1.1193 -0.4401 29 1 1.6468 -2.0065 -0.5830 30 1 1.1506 -0.2011 2.2482 31 1 1.3888 -1.0071 4.5601 32 1 2.7248 -3.0169 5.0394 33 1 3.8312 -4.2291 3.2070 34 1 1.9592 -3.9461 -0.5217 35 1 3.0720 -5.1428 -2.3608 36 1 5.5042 -5.5089 -2.3017 37 1 6.8364 -4.6741 -0.4093 38 1 5.7413 -3.4668 1.4334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065586712.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:10 Heat of formation + Delta-G solvation = 81.411634 kcal Electronic energy + Delta-G solvation = -19648.715273 eV Core-core repulsion = 16842.850786 eV Total energy + Delta-G solvation = -2805.864487 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.64929 -38.01772 -35.54748 -32.61982 -31.78715 -30.76500 -29.70857 -28.65514 -26.14854 -25.58511 -23.08903 -22.51733 -21.66161 -20.55830 -19.97798 -17.04563 -16.74474 -15.96428 -15.23879 -15.01704 -14.67838 -14.23466 -14.02091 -13.53563 -13.30817 -13.16926 -13.02920 -12.77185 -12.53375 -12.11141 -11.64779 -11.35424 -11.20622 -11.00148 -10.83718 -10.73509 -10.52717 -10.33383 -10.17250 -10.01206 -9.74902 -8.92253 -8.80123 -8.54605 -8.16031 -7.86572 -6.93243 -5.62512 -3.06289 1.24373 1.54151 1.96260 2.01936 3.40438 3.46686 3.48069 3.91296 4.31940 4.51371 4.88698 5.06028 5.07878 5.23474 5.35483 5.37595 5.48563 5.57470 5.62990 5.69184 5.77292 5.94395 6.08282 6.12605 6.21238 6.39406 6.41867 6.48044 6.60158 6.63789 6.69619 6.74769 6.79626 6.92810 7.09850 7.13565 7.38052 7.58463 7.66742 7.73739 7.95249 8.39211 9.29091 9.90768 10.33790 11.36641 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.017619 B = 0.006020 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.818422 B = 4649.695726 C = 5367.937925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.609 5.609 3 C -0.243 4.243 4 H 0.073 0.927 5 C -0.004 4.004 6 N -0.919 5.919 7 Si 0.907 3.093 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.281 1.281 11 C 0.185 3.815 12 C -0.075 4.075 13 C -0.089 4.089 14 C -0.125 4.125 15 C -0.138 4.138 16 C -0.115 4.115 17 C -0.068 4.068 18 C -0.027 4.027 19 C -0.104 4.104 20 C -0.119 4.119 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.110 4.110 24 H -0.010 1.010 25 H 0.049 0.951 26 H 0.037 0.963 27 H 0.249 0.751 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.144 0.856 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.420 -14.088 2.459 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.331 5.331 3 C -0.372 4.372 4 H 0.091 0.909 5 C -0.200 4.200 6 N -0.567 5.567 7 Si 0.737 3.263 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.207 1.207 11 C 0.057 3.943 12 C -0.078 4.078 13 C -0.107 4.107 14 C -0.143 4.143 15 C -0.156 4.156 16 C -0.133 4.133 17 C -0.069 4.069 18 C -0.027 4.027 19 C -0.122 4.122 20 C -0.137 4.137 21 C -0.146 4.146 22 C -0.140 4.140 23 C -0.128 4.128 24 H 0.009 0.991 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.162 0.838 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.289 -13.909 2.425 15.456 hybrid contribution 0.520 0.977 0.050 1.108 sum 6.809 -12.932 2.475 14.823 Atomic orbital electron populations 1.21069 0.81526 0.92987 1.01914 1.44054 1.02403 1.00396 1.86286 1.19335 0.91195 0.83693 1.42936 0.90895 1.24844 0.95680 0.97794 1.01714 1.70221 1.04902 1.24734 1.56874 0.86181 0.78810 0.83641 0.77655 1.21632 1.21767 1.20665 1.19824 0.96584 0.88037 0.89821 1.21472 0.93955 0.92743 0.99619 1.21394 0.98285 0.99829 0.91164 1.21255 0.99311 0.96605 0.97102 1.20900 0.99663 0.96806 0.98271 1.20963 1.00677 0.99813 0.91892 1.18644 0.99879 0.96195 0.92171 1.18825 0.93034 0.96740 0.94149 1.21299 1.00135 0.97467 0.93332 1.21070 0.94813 0.99380 0.98457 1.21122 0.94242 1.00771 0.98423 1.21029 0.99579 0.98925 0.94481 1.21205 0.93806 0.98934 0.98867 0.99141 0.93218 0.94435 0.93994 0.92060 0.92971 0.83831 0.86818 0.86954 0.86948 0.85751 0.86138 0.86470 0.86329 0.86179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.20 7.96 59.84 0.48 4.68 16 2 N -0.61 -15.21 1.80 -182.50 -0.33 -15.53 16 3 C -0.24 -6.65 9.74 -15.06 -0.15 -6.79 16 4 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 5 C 0.00 -0.12 5.46 -17.43 -0.10 -0.22 16 6 N -0.92 -26.47 9.44 55.49 0.52 -25.94 16 7 Si 0.91 22.13 29.56 -169.99 -5.02 17.11 16 8 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 C 0.19 3.90 4.58 -5.20 -0.02 3.88 16 12 C -0.07 -1.46 5.88 -104.29 -0.61 -2.07 16 13 C -0.09 -1.78 9.15 -39.63 -0.36 -2.14 16 14 C -0.12 -2.11 10.04 -39.52 -0.40 -2.51 16 15 C -0.14 -2.08 10.03 -39.63 -0.40 -2.48 16 16 C -0.12 -1.76 9.62 -39.25 -0.38 -2.14 16 17 C -0.07 -1.16 5.40 -104.90 -0.57 -1.72 16 18 C -0.03 -0.42 4.83 -104.90 -0.51 -0.93 16 19 C -0.10 -1.50 8.32 -39.25 -0.33 -1.83 16 20 C -0.12 -1.48 10.03 -39.63 -0.40 -1.88 16 21 C -0.13 -1.48 10.04 -39.52 -0.40 -1.87 16 22 C -0.12 -1.46 10.03 -39.63 -0.40 -1.86 16 23 C -0.11 -1.51 9.62 -39.26 -0.38 -1.88 16 24 H -0.01 -0.22 7.89 -51.93 -0.41 -0.63 16 25 H 0.05 1.33 6.62 -51.93 -0.34 0.98 16 26 H 0.04 1.01 7.14 -51.93 -0.37 0.64 16 27 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.06 1.33 7.88 -51.92 -0.41 0.92 16 29 H 0.05 1.03 6.26 -51.93 -0.33 0.70 16 30 H 0.14 3.29 5.89 -52.49 -0.31 2.98 16 31 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 32 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 34 H 0.12 1.78 6.93 -52.49 -0.36 1.41 16 35 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 314.02 15.07 4.73 4.73 Total: -1.00 -29.38 314.02 -10.04 -39.42 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.04 Total: 1.98 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -4.91 Total: -21.77 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.20 Total: -41.48 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.38 -10.04 -39.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065586712.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.835 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds