Wall clock time and date at job start Mon Mar 30 2020 00:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 2 15 15 C 1.52995 * 109.47398 * 179.97438 * 14 13 12 16 16 O 1.42898 * 109.47364 * 180.02562 * 15 14 13 17 17 C 1.35943 * 117.00296 * 180.02562 * 16 15 14 18 18 C 1.38711 * 120.02725 * 359.72972 * 17 16 15 19 19 C 1.38157 * 119.96536 * 179.78994 * 18 17 16 20 20 C 1.38452 * 120.03103 * 0.48144 * 19 18 17 21 21 F 1.35103 * 119.97023 * 179.72294 * 20 19 18 22 22 C 1.38452 * 120.06074 * 359.74789 * 20 19 18 23 23 C 1.38152 * 120.03111 * 0.02562 * 22 20 19 24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.00892 * 110.99877 * 38.95708 * 12 2 1 29 29 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 30 30 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 31 31 H 1.08993 * 109.47298 * 300.00353 * 14 13 12 32 32 H 1.09009 * 109.46890 * 59.99830 * 14 13 12 33 33 H 1.09002 * 109.47487 * 300.00403 * 15 14 13 34 34 H 1.09001 * 109.46695 * 60.00322 * 15 14 13 35 35 H 1.07996 * 120.01765 * 359.97438 * 18 17 16 36 36 H 1.07993 * 119.98273 * 180.20346 * 19 18 17 37 37 H 1.08003 * 119.98480 * 180.02562 * 22 20 19 38 38 H 1.08004 * 120.01814 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5329 3.5746 15 6 2.6609 0.4203 4.7694 16 8 3.1402 -0.2853 5.9159 17 6 3.2584 0.4217 7.0710 18 6 2.9253 1.7679 7.0980 19 6 3.0418 2.4842 8.2736 20 6 3.5003 1.8613 9.4220 21 9 3.6191 2.5643 10.5696 22 6 3.8377 0.5188 9.3952 23 6 3.7177 -0.2010 8.2222 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7088 1.1611 -3.4845 28 1 1.4496 -1.4978 1.4101 29 1 2.7588 1.0463 2.1182 30 1 1.0870 0.6164 2.5525 31 1 1.9183 -1.3563 3.8031 32 1 3.5904 -0.9270 3.3692 33 1 3.3378 1.2435 4.5407 34 1 1.6657 0.8146 4.9749 35 1 2.5721 2.2552 6.2012 36 1 2.7794 3.5315 8.2957 37 1 4.1948 0.0341 10.2918 38 1 3.9814 -1.2482 8.2014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068614788.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:48 Heat of formation + Delta-G solvation = -85.309604 kcal Electronic energy + Delta-G solvation = -18957.593211 eV Core-core repulsion = 15713.729924 eV Total energy + Delta-G solvation = -3243.863287 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.82668 -41.09922 -38.55023 -37.86417 -35.13338 -33.20396 -32.20631 -30.51780 -29.40609 -27.24111 -25.93388 -24.06854 -23.09863 -22.25636 -22.03740 -19.31796 -18.40865 -18.25422 -17.60165 -17.34968 -16.73790 -16.54159 -16.15398 -15.67575 -15.50191 -15.14474 -14.96344 -14.56760 -14.21229 -14.02749 -13.73427 -13.49990 -13.37466 -13.07786 -12.88235 -12.77336 -12.44418 -12.35399 -12.18861 -12.05894 -11.78114 -11.73297 -11.49224 -11.03674 -10.48147 -10.19573 -9.12540 -8.97313 -8.09628 -6.20586 0.15310 0.18839 1.44134 1.44700 1.55486 2.08836 2.45215 2.55871 3.18933 3.31651 3.60705 3.71766 3.82085 3.94501 4.08169 4.19777 4.22846 4.34404 4.43005 4.52784 4.66858 4.67557 4.78569 4.89037 4.90898 5.07562 5.11520 5.13581 5.16379 5.20376 5.27334 5.43961 5.70160 5.70759 5.82856 6.27688 6.35642 6.64516 6.83690 6.94973 7.49555 8.95897 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.054655 B = 0.002495 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.184831 B =11218.386098 C =11441.160656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.215 3.785 3 H 0.004 0.996 4 C -0.516 4.516 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.278 1.278 10 H -0.269 1.269 11 H -0.284 1.284 12 N -0.691 5.691 13 C 0.066 3.934 14 C -0.103 4.103 15 C 0.064 3.936 16 O -0.323 6.323 17 C 0.109 3.891 18 C -0.187 4.187 19 C -0.114 4.114 20 C 0.037 3.963 21 F -0.149 7.149 22 C -0.110 4.110 23 C -0.132 4.132 24 H 0.061 0.939 25 H 0.032 0.968 26 H 0.027 0.973 27 H 0.261 0.739 28 H 0.334 0.666 29 H 0.059 0.941 30 H 0.027 0.973 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.163 0.837 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.339 1.007 22.546 22.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.106 3.894 3 H 0.022 0.978 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.563 5.563 8 Si 0.787 3.213 9 H -0.204 1.204 10 H -0.194 1.194 11 H -0.209 1.209 12 N -0.321 5.321 13 C -0.063 4.063 14 C -0.141 4.141 15 C -0.011 4.011 16 O -0.237 6.237 17 C 0.064 3.936 18 C -0.206 4.206 19 C -0.133 4.133 20 C 0.018 3.982 21 F -0.128 7.128 22 C -0.128 4.128 23 C -0.150 4.150 24 H 0.080 0.920 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.151 0.849 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.180 0.820 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.977 1.027 22.237 22.613 hybrid contribution -0.850 0.307 -0.720 1.156 sum 3.126 1.334 21.517 21.784 Atomic orbital electron populations 1.22248 0.99900 0.99345 1.00197 1.18946 0.90122 0.92782 0.87540 0.97848 1.21480 1.30369 1.12507 0.91121 0.92711 1.25729 0.95482 0.95929 1.01937 1.70006 1.38018 1.24316 1.23997 0.85515 0.77912 0.79073 0.78849 1.20377 1.19352 1.20927 1.60621 1.58108 1.09771 1.03601 1.21754 0.98836 0.95597 0.90136 1.21333 1.03111 0.98307 0.91309 1.22830 0.99819 0.95351 0.83132 1.86057 1.81211 1.39365 1.17080 1.19343 0.96429 0.90994 0.86867 1.21367 1.05839 0.93379 0.99986 1.21168 0.99375 1.01774 0.90971 1.17819 1.06519 0.91172 0.82681 1.91470 1.94348 1.78900 1.48112 1.21189 1.00015 0.92047 0.99589 1.20537 1.02951 1.01904 0.89614 0.92000 0.94868 0.95373 0.93000 0.84930 0.92200 0.95468 0.90764 0.90889 0.90834 0.90635 0.83166 0.82893 0.81956 0.82802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.40 8.94 71.98 0.64 -6.76 16 2 C 0.21 10.68 2.57 44.17 0.11 10.79 16 3 H 0.00 0.20 7.80 -2.38 -0.02 0.18 16 4 C -0.52 -28.52 8.84 25.60 0.23 -28.29 16 5 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.40 5.30 84.66 0.45 0.85 16 7 N -0.92 -52.89 11.32 21.45 0.24 -52.65 16 8 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 12 N -0.69 -28.12 6.23 -495.44 -3.09 -31.21 16 13 C 0.07 2.13 5.48 86.30 0.47 2.61 16 14 C -0.10 -2.61 5.84 30.59 0.18 -2.43 16 15 C 0.06 1.34 4.74 71.98 0.34 1.68 16 16 O -0.32 -7.35 10.14 -92.91 -0.94 -8.29 16 17 C 0.11 2.22 6.69 22.49 0.15 2.37 16 18 C -0.19 -3.36 9.04 22.36 0.20 -3.16 16 19 C -0.11 -1.94 10.02 22.30 0.22 -1.72 16 20 C 0.04 0.68 7.30 22.37 0.16 0.84 16 21 F -0.15 -2.94 17.27 44.97 0.78 -2.16 16 22 C -0.11 -1.73 10.02 22.30 0.22 -1.51 16 23 C -0.13 -2.28 9.98 22.36 0.22 -2.05 16 24 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 25 H 0.03 1.48 8.13 -2.39 -0.02 1.46 16 26 H 0.03 1.15 7.45 -2.39 -0.02 1.13 16 27 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 28 H 0.33 12.68 8.47 -89.70 -0.76 11.92 16 29 H 0.06 2.00 8.06 -2.39 -0.02 1.98 16 30 H 0.03 0.84 7.44 -2.39 -0.02 0.83 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.07 1.41 7.65 -2.39 -0.02 1.40 16 34 H 0.08 1.39 7.67 -2.39 -0.02 1.37 16 35 H 0.15 2.27 6.30 -2.91 -0.02 2.26 16 36 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -61.24 322.19 2.92 -58.32 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.30 Total: 16.98 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: 3.61 Total: -26.78 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -2.85 Total: -83.85 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.94 Total: -8.29 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.78 Total: -2.16 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -61.24 2.92 -58.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068614788.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.990 kcal (2) G-P(sol) polarization free energy of solvation -61.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds