Wall clock time and date at job start Mon Mar 30 2020 00:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.47130 * 2 1 4 4 C 1.46898 * 111.00084 * 297.32312 * 3 2 1 5 5 C 1.50696 * 109.46947 * 292.71421 * 4 3 2 6 6 H 1.08001 * 120.00241 * 355.02553 * 5 4 3 7 7 C 1.37879 * 120.00065 * 175.02263 * 5 4 3 8 8 N 1.31518 * 119.99978 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00242 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47087 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47114 * 120.00178 * 9 7 5 12 12 H 1.48503 * 109.47148 * 240.00586 * 9 7 5 13 13 C 1.46901 * 110.99783 * 61.27751 * 3 2 1 14 14 C 1.53001 * 109.47316 * 66.04465 * 13 3 2 15 15 O 1.42895 * 109.47334 * 64.99807 * 14 13 3 16 16 C 1.35949 * 117.00400 * 179.97438 * 15 14 13 17 17 C 1.38669 * 120.05956 * 359.97438 * 16 15 14 18 18 C 1.38179 * 119.96629 * 180.02562 * 17 16 15 19 19 C 1.38263 * 120.09654 * 359.97438 * 18 17 16 20 20 C 1.38255 * 120.12927 * 0.02562 * 19 18 17 21 21 C 1.38336 * 120.02480 * 359.97438 * 20 19 18 22 22 F 1.35101 * 120.04083 * 180.02562 * 21 20 19 23 23 H 1.08995 * 109.47329 * 59.42717 * 1 2 3 24 24 H 1.08995 * 109.47456 * 179.43081 * 1 2 3 25 25 H 1.08999 * 109.46994 * 299.42791 * 1 2 3 26 26 H 1.09003 * 109.46525 * 240.00372 * 2 1 3 27 27 H 1.09004 * 109.47005 * 120.00542 * 2 1 3 28 28 H 1.08992 * 109.47370 * 52.71754 * 4 3 2 29 29 H 1.08995 * 109.46802 * 172.71691 * 4 3 2 30 30 H 0.96998 * 120.00200 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.47127 * 306.04545 * 13 3 2 32 32 H 1.08997 * 109.47082 * 186.04250 * 13 3 2 33 33 H 1.09003 * 109.46693 * 304.99663 * 14 13 3 34 34 H 1.08998 * 109.47329 * 185.00002 * 14 13 3 35 35 H 1.08000 * 120.01687 * 0.03723 * 17 16 15 36 36 H 1.08006 * 119.95173 * 180.27100 * 18 17 16 37 37 H 1.08006 * 119.93524 * 179.97438 * 19 18 17 38 38 H 1.08000 * 119.98547 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6017 2.0912 -1.2184 5 6 2.3007 1.4917 -2.4113 6 1 3.0464 0.7232 -2.2703 7 6 1.9884 1.9242 -3.6826 8 7 1.0807 2.8604 -3.8543 9 14 2.8544 1.1807 -5.1613 10 1 3.8244 0.1543 -4.7024 11 1 1.8517 0.5485 -6.0560 12 1 3.5751 2.2477 -5.9012 13 6 1.5738 2.1010 1.2027 14 6 2.2315 1.4823 2.4378 15 8 3.6444 1.6871 2.3781 16 6 4.3836 1.1951 3.4076 17 6 3.7617 0.5299 4.4534 18 6 4.5148 0.0311 5.4991 19 6 5.8878 0.1939 5.5041 20 6 6.5119 0.8565 4.4635 21 6 5.7630 1.3579 3.4140 22 9 6.3726 2.0050 2.3967 23 1 -0.3634 0.5227 -0.8847 24 1 -0.3634 -1.0275 -0.0102 25 1 -0.3633 0.5049 0.8951 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 0.5232 1.9942 -1.3427 29 1 1.8645 3.1457 -1.1353 30 1 0.8612 3.1649 -4.7487 31 1 0.4901 2.0234 1.2909 32 1 1.8580 3.1505 1.1270 33 1 2.0201 0.4133 2.4650 34 1 1.8337 1.9543 3.3362 35 1 2.6894 0.4015 4.4505 36 1 4.0307 -0.4908 6.3113 37 1 6.4738 -0.1967 6.3230 38 1 7.5846 0.9819 4.4696 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081054101.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:01 Heat of formation + Delta-G solvation = -50.585578 kcal Electronic energy + Delta-G solvation = -20211.921431 eV Core-core repulsion = 16969.563891 eV Total energy + Delta-G solvation = -3242.357540 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.59596 -39.94328 -37.87435 -36.72481 -32.64988 -30.85027 -30.72305 -29.47593 -28.80545 -25.98325 -23.90814 -23.04554 -22.45496 -21.61374 -19.15219 -18.40986 -16.99152 -16.49775 -16.27780 -16.09658 -15.32132 -15.24097 -14.77936 -14.46927 -14.36006 -13.93201 -13.86267 -13.00428 -12.88606 -12.68145 -12.29958 -11.96290 -11.83442 -11.65121 -11.42677 -11.21336 -11.09470 -11.02936 -10.64458 -10.57649 -10.41206 -10.05354 -9.69017 -9.15420 -9.01710 -8.39840 -8.13246 -7.15355 -5.99122 -3.99336 1.05433 1.23523 3.24400 3.33867 3.41384 3.47236 3.52599 4.27853 4.45563 4.64497 4.73258 4.86084 5.05473 5.12113 5.23724 5.32487 5.36414 5.43930 5.52566 5.72049 5.84880 5.91691 5.94934 6.00462 6.10308 6.14241 6.23726 6.27625 6.38812 6.64381 6.67704 6.87692 7.31896 7.43061 7.48389 7.85419 8.13204 8.21608 8.58420 9.09162 9.64681 11.11700 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.023701 B = 0.004501 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.086695 B = 6219.484575 C = 6899.720896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.058 3.942 3 N -0.527 5.527 4 C 0.188 3.812 5 C -0.501 4.501 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.284 1.284 13 C 0.049 3.951 14 C 0.065 3.935 15 O -0.280 6.280 16 C 0.109 3.891 17 C -0.191 4.191 18 C -0.091 4.091 19 C -0.141 4.141 20 C -0.118 4.118 21 C 0.065 3.935 22 F -0.129 7.129 23 H 0.070 0.930 24 H 0.047 0.953 25 H 0.043 0.957 26 H 0.083 0.917 27 H 0.049 0.951 28 H 0.003 0.997 29 H 0.025 0.975 30 H 0.260 0.740 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.874 -5.437 19.237 20.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.071 4.071 3 N -0.251 5.251 4 C 0.064 3.936 5 C -0.540 4.540 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.541 5.541 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.210 1.210 13 C -0.080 4.080 14 C -0.010 4.010 15 O -0.192 6.192 16 C 0.061 3.939 17 C -0.209 4.209 18 C -0.110 4.110 19 C -0.159 4.159 20 C -0.137 4.137 21 C 0.046 3.954 22 F -0.108 7.108 23 H 0.089 0.911 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.021 0.979 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.381 -5.199 18.861 20.049 hybrid contribution -0.615 -0.275 -0.938 1.155 sum 3.766 -5.474 17.923 19.115 Atomic orbital electron populations 1.22413 0.99495 1.01076 1.01938 1.22022 0.91885 0.91779 1.01398 1.62337 1.58933 1.01599 1.02247 1.19800 0.94717 0.93823 0.85309 1.21192 1.21457 1.21300 0.90062 0.91848 1.24974 0.95341 0.95297 0.99022 1.69966 1.32447 1.29488 1.22174 0.86470 0.79463 0.79130 0.82559 1.19646 1.21199 1.21034 1.22139 0.96275 0.99374 0.90212 1.23067 0.78092 1.00851 0.99009 1.86374 1.19990 1.72783 1.40082 1.19222 0.90388 0.95136 0.89126 1.21197 1.00907 1.03566 0.95274 1.20972 0.93856 0.98442 0.97700 1.20842 0.94677 1.01522 0.98900 1.21006 1.00440 0.99113 0.93165 1.17066 0.87977 1.01701 0.88700 1.91536 1.82729 1.79012 1.57490 0.91123 0.93344 0.93845 0.89872 0.93249 0.97905 0.95655 0.93073 0.92982 0.90252 0.91847 0.92387 0.84695 0.85420 0.85233 0.84369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.30 9.26 37.16 0.34 -2.95 16 2 C 0.06 1.11 5.68 -3.82 -0.02 1.09 16 3 N -0.53 -11.43 4.64 -236.08 -1.10 -12.53 16 4 C 0.19 4.90 4.54 -4.98 -0.02 4.88 16 5 C -0.50 -14.28 8.39 -34.44 -0.29 -14.56 16 6 H 0.06 1.82 7.39 -52.49 -0.39 1.43 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 9 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.05 0.86 5.12 -3.82 -0.02 0.84 16 14 C 0.07 0.95 4.80 37.16 0.18 1.13 16 15 O -0.28 -4.91 9.95 -19.58 -0.19 -5.10 16 16 C 0.11 1.63 6.69 -39.18 -0.26 1.37 16 17 C -0.19 -2.21 9.04 -39.44 -0.36 -2.57 16 18 C -0.09 -0.87 10.04 -39.59 -0.40 -1.27 16 19 C -0.14 -1.32 10.04 -39.57 -0.40 -1.71 16 20 C -0.12 -1.33 10.02 -39.54 -0.40 -1.72 16 21 C 0.07 0.97 7.31 -39.30 -0.29 0.69 16 22 F -0.13 -2.24 17.11 2.25 0.04 -2.20 16 23 H 0.07 1.43 6.29 -51.93 -0.33 1.11 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.04 0.67 6.33 -51.93 -0.33 0.34 16 26 H 0.08 1.78 6.98 -51.93 -0.36 1.41 16 27 H 0.05 0.84 6.32 -51.93 -0.33 0.51 16 28 H 0.00 0.09 6.02 -51.93 -0.31 -0.23 16 29 H 0.03 0.71 7.91 -51.93 -0.41 0.30 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.05 0.84 6.05 -51.93 -0.31 0.53 16 32 H 0.08 1.46 7.92 -51.93 -0.41 1.05 16 33 H 0.06 0.87 5.83 -51.93 -0.30 0.56 16 34 H 0.06 0.68 7.66 -51.93 -0.40 0.28 16 35 H 0.14 1.33 6.30 -52.49 -0.33 1.00 16 36 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 37 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 313.85 15.07 4.73 4.73 Total: -1.00 -31.76 313.85 -7.87 -39.63 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -5.04 Total: -2.04 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -2.02 Total: -13.33 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: -0.36 Total: -38.71 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.19 Total: -5.10 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.76 -7.87 -39.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081054101.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.953 kcal (2) G-P(sol) polarization free energy of solvation -31.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds