Wall clock time and date at job start Mon Mar 30 2020 00:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36057 * 116.99945 * 2 1 4 4 C 1.38637 * 119.98767 * 359.72083 * 3 2 1 5 5 C 1.38137 * 120.04633 * 180.27581 * 4 3 2 6 6 C 1.38868 * 120.01756 * 0.02562 * 5 4 3 7 7 N 1.39928 * 120.01192 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00242 * 180.02562 * 7 6 5 9 9 C 1.46503 * 120.00099 * 0.02562 * 7 6 5 10 10 C 1.53004 * 109.46658 * 89.99917 * 9 7 6 11 11 C 1.53007 * 109.46863 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47232 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99760 * 359.97438 * 12 11 10 14 14 C 1.37869 * 119.99865 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99842 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 120.00443 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47056 * 89.99646 * 16 14 12 18 18 H 1.48494 * 109.46997 * 210.00221 * 16 14 12 19 19 H 1.48497 * 109.46696 * 329.99801 * 16 14 12 20 20 C 1.38837 * 119.97814 * 0.02562 * 6 5 4 21 21 C 1.38290 * 119.95893 * 359.97438 * 20 6 5 22 22 F 1.35100 * 120.01519 * 179.97438 * 21 20 6 23 23 H 1.08994 * 109.47302 * 299.99785 * 1 2 3 24 24 H 1.08999 * 109.47353 * 60.00491 * 1 2 3 25 25 H 1.09004 * 109.46884 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.97630 * 0.25808 * 4 3 2 27 27 H 1.07998 * 119.99152 * 179.97438 * 5 4 3 28 28 H 1.09000 * 109.47656 * 89.99980 * 8 7 6 29 29 H 1.08999 * 109.47495 * 210.00248 * 8 7 6 30 30 H 1.09007 * 109.46859 * 329.99967 * 8 7 6 31 31 H 1.09001 * 109.47314 * 209.99488 * 9 7 6 32 32 H 1.08999 * 109.46941 * 330.00544 * 9 7 6 33 33 H 1.08994 * 109.47202 * 299.99573 * 10 9 7 34 34 H 1.08999 * 109.46932 * 60.00622 * 10 9 7 35 35 H 1.09006 * 109.46936 * 299.99998 * 11 10 9 36 36 H 1.08995 * 109.46821 * 59.99727 * 11 10 9 37 37 H 0.97001 * 120.00299 * 180.02562 * 15 14 12 38 38 H 1.08002 * 120.02364 * 180.02562 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2123 0.0000 4 6 1.2913 2.3748 -0.0059 5 6 1.9172 3.6062 -0.0116 6 6 3.3039 3.6808 -0.0121 7 7 3.9377 4.9282 -0.0185 8 6 5.4006 5.0066 -0.0195 9 6 3.1385 6.1560 -0.0241 10 6 2.8610 6.5904 1.4165 11 6 2.0257 7.8723 1.4107 12 6 1.7528 8.3005 2.8296 13 1 2.1364 7.7165 3.6531 14 6 1.0135 9.4378 3.0763 15 7 0.7750 9.8112 4.3146 16 14 0.3494 10.4475 1.6519 17 1 -0.9998 9.9511 1.2800 18 1 0.2583 11.8735 2.0562 19 1 1.2620 10.3206 0.4874 20 6 4.0612 2.5171 -0.0073 21 6 3.4336 1.2848 -0.0015 22 9 4.1694 0.1517 0.0026 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2128 2.3176 -0.0062 27 1 1.3279 4.5113 -0.0166 28 1 5.7631 5.0210 -1.0474 29 1 5.7161 5.9172 0.4897 30 1 5.8113 4.1398 0.4984 31 1 3.6859 6.9436 -0.5419 32 1 2.1941 5.9724 -0.5365 33 1 2.3135 5.8029 1.9344 34 1 3.8053 6.7740 1.9289 35 1 2.5727 8.6600 0.8926 36 1 1.0814 7.6883 0.8983 37 1 0.2545 10.6112 4.4883 38 1 5.1397 2.5742 -0.0073 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121694811.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:13 Heat of formation + Delta-G solvation = -73.759548 kcal Electronic energy + Delta-G solvation = -19860.597740 eV Core-core repulsion = 16617.235301 eV Total energy + Delta-G solvation = -3243.362439 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.82740 -41.03106 -39.44719 -36.99943 -35.44603 -33.63852 -31.80604 -30.44260 -29.34127 -28.27385 -26.38106 -24.57615 -23.39693 -22.22829 -21.51610 -19.45266 -18.91900 -18.02511 -17.86663 -17.06947 -17.05670 -16.37238 -15.99118 -15.68363 -15.63852 -15.45240 -15.26313 -15.12222 -14.69196 -13.80698 -13.71344 -13.55596 -13.29545 -13.24202 -12.95298 -12.74880 -12.63061 -12.44722 -12.20375 -11.97369 -11.75606 -11.64993 -11.41851 -11.33377 -10.74682 -10.23990 -9.83433 -8.27741 -8.02820 -6.32537 0.14819 0.47587 1.38873 1.41093 1.52875 2.13415 2.38464 2.39605 2.66522 3.08263 3.29847 3.73893 4.02446 4.04611 4.21075 4.26812 4.34431 4.43553 4.44373 4.50618 4.62910 4.70864 4.74236 4.78398 4.80389 4.93078 4.96260 5.02117 5.08459 5.18914 5.27951 5.53794 5.56028 5.60560 5.68034 6.26313 6.34879 6.36567 6.55262 6.76555 7.32329 8.89685 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.023212 B = 0.004074 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.966188 B = 6870.793991 C = 7579.911926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.020 3.980 4 C -0.125 4.125 5 C -0.174 4.174 6 C 0.209 3.791 7 N -0.630 5.630 8 C 0.086 3.914 9 C 0.128 3.872 10 C -0.109 4.109 11 C -0.009 4.009 12 C -0.534 4.534 13 H 0.023 0.977 14 C 0.000 4.000 15 N -0.956 5.956 16 Si 0.955 3.045 17 H -0.265 1.265 18 H -0.288 1.288 19 H -0.239 1.239 20 C -0.203 4.203 21 C 0.094 3.906 22 F -0.144 7.144 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.118 0.882 26 H 0.159 0.841 27 H 0.139 0.861 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.040 0.960 34 H 0.043 0.957 35 H 0.026 0.974 36 H 0.025 0.975 37 H 0.265 0.735 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.038 -15.377 -14.568 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C -0.027 4.027 4 C -0.144 4.144 5 C -0.196 4.196 6 C 0.105 3.895 7 N -0.340 5.340 8 C -0.056 4.056 9 C 0.006 3.994 10 C -0.148 4.148 11 C -0.047 4.047 12 C -0.572 4.572 13 H 0.041 0.959 14 C -0.196 4.196 15 N -0.597 5.597 16 Si 0.778 3.222 17 H -0.190 1.190 18 H -0.214 1.214 19 H -0.162 1.162 20 C -0.227 4.227 21 C 0.074 3.926 22 F -0.123 7.123 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.136 0.864 26 H 0.176 0.824 27 H 0.157 0.843 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.045 0.955 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.187 -15.314 -14.483 21.317 hybrid contribution -0.422 0.531 0.426 0.801 sum 2.765 -14.783 -14.058 20.586 Atomic orbital electron populations 1.23321 0.76456 1.05474 1.02238 1.86064 1.23403 1.25811 1.90006 1.18846 0.90636 0.86157 1.07072 1.21104 1.01043 0.90142 1.02141 1.20859 0.92837 0.98608 1.07324 1.17613 0.91618 0.85487 0.94752 1.46686 1.06024 1.02100 1.79154 1.21813 0.78419 1.03199 1.02153 1.21562 0.96451 0.85512 0.95911 1.21722 0.99079 0.97057 0.96915 1.19473 0.95996 0.94685 0.94525 1.21518 1.33067 1.09461 0.93130 0.95857 1.26107 0.96079 0.98775 0.98638 1.70094 1.41579 1.26176 1.21855 0.85587 0.79708 0.77089 0.79825 1.19047 1.21402 1.16164 1.20480 1.01268 0.88746 1.12187 1.16852 0.86293 0.82309 1.07178 1.91438 1.76998 1.49508 1.94319 0.92040 0.91474 0.86392 0.82359 0.84315 0.91668 0.90998 0.90907 0.89211 0.89889 0.94155 0.93811 0.95531 0.95691 0.92580 0.82798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.34 -8.51 10.36 -94.19 -0.98 -9.49 16 3 C 0.02 0.53 6.69 22.52 0.15 0.68 16 4 C -0.13 -2.97 9.03 22.34 0.20 -2.77 16 5 C -0.17 -4.49 9.21 22.40 0.21 -4.28 16 6 C 0.21 5.50 6.55 38.14 0.25 5.75 16 7 N -0.63 -15.82 3.01 -722.03 -2.18 -18.00 16 8 C 0.09 1.69 10.19 127.77 1.30 2.99 16 9 C 0.13 3.47 5.16 86.38 0.45 3.92 16 10 C -0.11 -3.98 5.48 30.60 0.17 -3.82 16 11 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 12 C -0.53 -30.49 9.66 25.60 0.25 -30.24 16 13 H 0.02 1.49 7.99 -2.91 -0.02 1.47 16 14 C 0.00 0.01 5.47 84.65 0.46 0.47 16 15 N -0.96 -60.10 13.96 21.44 0.30 -59.80 16 16 Si 0.96 42.86 27.47 68.60 1.88 44.74 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 18 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.24 -9.60 6.54 99.48 0.65 -8.95 16 20 C -0.20 -5.18 9.18 22.43 0.21 -4.97 16 21 C 0.09 2.63 7.31 22.44 0.16 2.79 16 22 F -0.14 -4.22 17.11 44.97 0.77 -3.45 16 23 H 0.06 0.87 7.67 -2.39 -0.02 0.85 16 24 H 0.07 0.85 7.65 -2.39 -0.02 0.83 16 25 H 0.12 1.27 8.14 -2.39 -0.02 1.26 16 26 H 0.16 2.87 6.29 -2.91 -0.02 2.86 16 27 H 0.14 3.48 6.14 -2.91 -0.02 3.46 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.40 8.07 -2.39 -0.02 1.38 16 30 H 0.07 1.30 6.20 -2.38 -0.01 1.29 16 31 H 0.09 2.15 8.07 -2.39 -0.02 2.13 16 32 H 0.08 2.08 6.20 -2.39 -0.01 2.07 16 33 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.03 1.11 7.20 -2.38 -0.02 1.10 16 36 H 0.02 1.03 7.57 -2.39 -0.02 1.02 16 37 H 0.27 15.53 8.31 -92.71 -0.77 14.75 16 38 H 0.15 3.30 6.14 -2.91 -0.02 3.29 16 Total: -1.00 -69.93 316.50 5.84 -64.09 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 1.00 Total: 10.24 kcal Atomic # 6 Polarization: -33.37 SS G_CDS: 5.04 Total: -28.33 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -1.88 Total: -77.80 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.98 Total: -9.49 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.77 Total: -3.45 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.88 Total: 44.74 kcal Total: -69.93 5.84 -64.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121694811.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.669 kcal (2) G-P(sol) polarization free energy of solvation -69.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds