Wall clock time and date at job start Mon Mar 30 2020 01:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99856 * 2 1 4 4 C 1.53001 * 109.47049 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47091 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47373 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47267 * 179.97438 * 6 5 4 8 8 O 1.21304 * 120.00152 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99798 * 180.27214 * 7 6 5 10 10 C 1.40595 * 119.99764 * 179.72414 * 9 7 6 11 11 C 1.40646 * 126.08311 * 359.69131 * 10 9 7 12 12 N 1.30914 * 108.38784 * 179.87895 * 11 10 9 13 13 N 1.40065 * 108.40439 * 0.38138 * 12 11 10 14 14 C 1.37327 * 126.06489 * 179.73676 * 13 12 11 15 15 H 1.08003 * 119.99416 * 174.15969 * 14 13 12 16 16 C 1.38979 * 120.00372 * 354.16004 * 14 13 12 17 17 N 1.31300 * 119.99795 * 5.93274 * 16 14 13 18 18 Si 1.86793 * 120.00339 * 185.93961 * 16 14 13 19 19 H 1.48508 * 109.47464 * 94.97550 * 18 16 14 20 20 H 1.48497 * 109.47452 * 214.97875 * 18 16 14 21 21 H 1.48508 * 109.47127 * 334.97858 * 18 16 14 22 22 C 1.35686 * 126.08204 * 180.02562 * 10 9 7 23 23 H 1.09001 * 109.47077 * 299.99300 * 1 2 3 24 24 H 1.08995 * 109.47565 * 59.99501 * 1 2 3 25 25 H 1.09002 * 109.46841 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46699 * 60.00672 * 3 2 1 27 27 H 1.08993 * 109.47376 * 300.00407 * 3 2 1 28 28 H 1.08998 * 109.46869 * 60.00717 * 4 3 2 29 29 H 1.08993 * 109.47316 * 300.00385 * 4 3 2 30 30 H 1.08996 * 109.47208 * 59.99772 * 5 4 3 31 31 H 1.09007 * 109.47159 * 300.00373 * 5 4 3 32 32 H 1.09004 * 109.47302 * 59.99802 * 6 5 4 33 33 H 1.08998 * 109.47099 * 300.00386 * 6 5 4 34 34 H 0.97001 * 120.00137 * 359.73317 * 9 7 6 35 35 H 1.07998 * 125.80732 * 0.02562 * 11 10 9 36 36 H 0.96997 * 119.99732 * 180.02562 * 17 16 14 37 37 H 1.07995 * 126.24184 * 359.92839 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5825 0.0000 6 6 5.6829 2.4618 -0.0013 7 6 6.2958 3.8385 -0.0013 8 8 5.5828 4.8199 -0.0008 9 7 7.6361 3.9794 -0.0079 10 6 8.2079 5.2638 -0.0137 11 6 7.5064 6.4828 -0.0196 12 7 8.3771 7.4604 -0.0214 13 7 9.6636 6.9066 -0.0255 14 6 10.8451 7.6067 -0.0334 15 1 11.7843 7.0817 0.0592 16 6 10.8320 8.9906 -0.1606 17 7 9.6906 9.6395 -0.1559 18 14 12.4382 9.9274 -0.3383 19 1 12.7237 10.1521 -1.7782 20 1 12.3272 11.2362 0.3544 21 1 13.5410 9.1387 0.2677 22 6 9.5347 5.5479 -0.0211 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6886 1.8463 0.8901 27 1 1.6885 1.8464 -0.8899 28 1 3.8566 0.6441 -0.8909 29 1 3.8574 0.6436 0.8890 30 1 3.8364 3.1228 0.8904 31 1 3.8357 3.1240 -0.8895 32 1 6.0039 1.9215 -0.8920 33 1 6.0052 1.9201 0.8880 34 1 8.2063 3.1946 -0.0087 35 1 6.4321 6.5936 -0.0201 36 1 9.6815 10.6053 -0.2450 37 1 10.3413 4.8298 -0.0224 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139327066.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:40 Heat of formation + Delta-G solvation = -15.012031 kcal Electronic energy + Delta-G solvation = -19176.084823 eV Core-core repulsion = 15955.189830 eV Total energy + Delta-G solvation = -3220.894994 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.88840 -38.68974 -38.13620 -34.85958 -34.08487 -33.11172 -30.41533 -29.92303 -27.76220 -26.66871 -24.95596 -23.79167 -21.50233 -20.86663 -19.98325 -19.35324 -17.47623 -16.53206 -16.52945 -16.36700 -15.45414 -15.43329 -15.19753 -15.10219 -14.15452 -14.03145 -13.37746 -13.28383 -12.89676 -12.66053 -12.62579 -11.76633 -11.69581 -11.62616 -11.49447 -11.38757 -11.25132 -11.09571 -10.90950 -10.71215 -10.51678 -10.10168 -9.91310 -9.14924 -9.10016 -8.77359 -8.03012 -6.66293 -6.54362 -4.20751 2.87688 3.05646 3.07397 3.11281 3.41391 3.70789 3.73615 3.94039 4.45373 4.75903 4.77626 4.77860 5.00271 5.02862 5.05100 5.12193 5.20791 5.24571 5.29298 5.36052 5.61894 5.65152 5.72682 5.79331 6.16021 6.26710 6.29517 6.50317 6.90128 6.94417 6.99572 7.16967 7.28036 7.88717 8.22894 8.33288 8.66891 8.92469 9.40838 9.69901 10.42060 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.081779 B = 0.002657 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.304376 B =10534.437564 C =10835.376077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.396 6.396 3 C 0.059 3.941 4 C -0.118 4.118 5 C -0.101 4.101 6 C -0.134 4.134 7 C 0.496 3.504 8 O -0.539 6.539 9 N -0.628 5.628 10 C -0.059 4.059 11 C -0.034 4.034 12 N -0.262 5.262 13 N -0.144 5.144 14 C -0.324 4.324 15 H 0.116 0.884 16 C 0.046 3.954 17 N -0.770 5.770 18 Si 0.934 3.066 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.264 1.264 22 C -0.084 4.084 23 H 0.041 0.959 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.397 0.603 35 H 0.176 0.824 36 H 0.274 0.726 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.966 -15.654 0.023 18.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.315 6.315 3 C -0.017 4.017 4 C -0.156 4.156 5 C -0.139 4.139 6 C -0.174 4.174 7 C 0.282 3.718 8 O -0.416 6.416 9 N -0.270 5.270 10 C -0.165 4.165 11 C -0.210 4.210 12 N -0.093 5.093 13 N 0.088 4.912 14 C -0.456 4.456 15 H 0.133 0.867 16 C -0.171 4.171 17 N -0.397 5.397 18 Si 0.758 3.242 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.188 1.188 22 C -0.235 4.235 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.229 0.771 35 H 0.192 0.808 36 H 0.085 0.915 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.301 -13.606 0.018 16.482 hybrid contribution 0.763 -0.739 -0.079 1.065 sum -8.538 -14.345 -0.061 16.694 Atomic orbital electron populations 1.22725 0.81147 1.02594 1.00036 1.87853 1.19651 1.28507 1.95467 1.22590 0.94344 0.84292 1.00485 1.21541 0.92868 0.97885 1.03271 1.21218 0.93104 0.95541 1.04033 1.21570 0.96689 0.95089 1.04053 1.20465 0.81951 0.91323 0.78044 1.90589 1.60806 1.40301 1.49942 1.42586 1.06160 1.06703 1.71549 1.17315 0.91287 0.84504 1.23392 1.24109 1.00094 0.88709 1.08082 1.78238 0.85992 1.19388 1.25660 1.44541 1.05407 1.01908 1.39354 1.19863 0.82675 0.90159 1.52933 0.86652 1.25644 0.98965 0.96964 0.95542 1.70229 1.25253 1.08935 1.35288 0.85816 0.80358 0.79045 0.78940 1.19664 1.20126 1.18799 1.21275 0.95209 0.87050 1.19977 0.94084 0.94090 0.89760 0.93128 0.93133 0.91097 0.91102 0.90888 0.90895 0.89215 0.89219 0.77063 0.80754 0.91511 0.83744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.40 -4.15 10.70 -35.23 -0.38 -4.52 16 3 C 0.06 0.56 5.94 37.16 0.22 0.78 16 4 C -0.12 -1.09 5.58 -26.73 -0.15 -1.24 16 5 C -0.10 -1.11 4.50 -26.73 -0.12 -1.24 16 6 C -0.13 -1.49 5.70 -27.89 -0.16 -1.65 16 7 C 0.50 8.44 7.80 -10.99 -0.09 8.35 16 8 O -0.54 -11.44 13.13 5.54 0.07 -11.37 16 9 N -0.63 -11.09 5.47 -10.00 -0.05 -11.14 16 10 C -0.06 -1.39 6.90 -83.84 -0.58 -1.97 16 11 C -0.03 -0.92 10.85 -17.03 -0.18 -1.11 16 12 N -0.26 -7.73 10.42 30.80 0.32 -7.41 16 13 N -0.14 -4.01 3.74 -11.41 -0.04 -4.06 16 14 C -0.32 -8.68 10.24 -14.82 -0.15 -8.83 16 15 H 0.12 2.76 7.84 -52.48 -0.41 2.35 16 16 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 17 N -0.77 -21.79 11.84 55.49 0.66 -21.13 16 18 Si 0.93 19.10 29.55 -169.99 -5.02 14.08 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 22 C -0.08 -2.01 11.49 -16.39 -0.19 -2.20 16 23 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 24 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 31 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.40 5.31 8.83 -40.82 -0.36 4.95 16 35 H 0.18 4.64 5.92 -52.49 -0.31 4.33 16 36 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.15 2.86 8.06 -52.49 -0.42 2.44 16 LS Contribution 320.11 15.07 4.82 4.82 Total: -1.00 -34.34 320.11 -5.29 -39.63 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.29 Total: 7.75 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -0.38 Total: -6.64 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.88 Total: -43.75 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.30 Total: -15.89 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.34 -5.29 -39.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139327066.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.618 kcal (2) G-P(sol) polarization free energy of solvation -34.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds