Wall clock time and date at job start Mon Mar 30 2020 01:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 C 1.33386 * 125.20563 * 89.71372 * 3 2 1 5 5 C 1.38429 * 114.91814 * 179.85823 * 4 3 2 6 6 C 1.33382 * 114.92415 * 0.43727 * 5 4 3 7 7 C 1.50701 * 125.20346 * 179.79342 * 6 5 4 8 8 H 1.08999 * 109.47128 * 19.99436 * 7 6 5 9 9 C 1.53002 * 109.46822 * 259.99603 * 7 6 5 10 10 N 1.46900 * 109.47083 * 139.99638 * 7 6 5 11 11 C 1.46905 * 111.00161 * 204.99618 * 10 7 6 12 12 C 1.52995 * 109.47228 * 180.02562 * 11 10 7 13 13 C 1.53003 * 109.47166 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47341 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99930 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99943 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00143 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99908 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47200 * 60.00281 * 18 16 14 20 20 H 1.48500 * 109.47166 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47156 * 300.00396 * 18 16 14 22 22 S 1.75883 * 109.59202 * 359.76481 * 6 5 4 23 23 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 26 26 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 27 27 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 28 28 H 1.07996 * 122.54096 * 0.02562 * 4 3 2 29 29 H 1.08003 * 122.53429 * 180.20223 * 5 4 3 30 30 H 1.08999 * 109.47133 * 299.99830 * 9 7 6 31 31 H 1.08994 * 109.47026 * 60.00158 * 9 7 6 32 32 H 1.09005 * 109.47191 * 180.02562 * 9 7 6 33 33 H 1.00902 * 111.00041 * 81.04450 * 10 7 6 34 34 H 1.08995 * 109.47022 * 300.00298 * 11 10 7 35 35 H 1.09007 * 109.46528 * 60.00016 * 11 10 7 36 36 H 1.08995 * 109.47324 * 300.00067 * 12 11 10 37 37 H 1.09000 * 109.47172 * 60.00140 * 12 11 10 38 38 H 1.09002 * 109.47115 * 300.00500 * 13 12 11 39 39 H 1.09000 * 109.47108 * 59.99921 * 13 12 11 40 40 H 0.97004 * 119.99969 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2836 2.1476 1.0899 5 6 2.7418 3.4303 0.8427 6 6 2.8539 3.7481 -0.4479 7 6 3.3240 5.0785 -0.9772 8 1 3.8818 5.6019 -0.2008 9 6 2.1143 5.9191 -1.3907 10 7 4.1918 4.8627 -2.1427 11 6 5.1167 5.9892 -2.3262 12 6 6.0015 5.7290 -3.5469 13 6 6.9653 6.9020 -3.7376 14 6 7.8372 6.6455 -4.9396 15 1 7.7158 5.7369 -5.5107 16 6 8.7892 7.5712 -5.3109 17 7 8.9366 8.6777 -4.6157 18 14 9.8695 7.2535 -6.8012 19 1 9.0173 7.1112 -8.0091 20 1 10.8049 8.3919 -6.9862 21 1 10.6455 6.0045 -6.5930 22 16 2.3699 2.3769 -1.4372 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5137 0.8901 27 1 1.8934 -0.5139 -0.8900 28 1 2.1430 1.7635 2.0894 29 1 2.9861 4.1225 1.6349 30 1 1.5564 5.3956 -2.1672 31 1 1.4704 6.0791 -0.5260 32 1 2.4543 6.8812 -1.7741 33 1 3.6454 4.7041 -2.9760 34 1 4.5471 6.9057 -2.4795 35 1 5.7420 6.0940 -1.4394 36 1 6.5712 4.8124 -3.3941 37 1 5.3760 5.6245 -4.4334 38 1 6.3959 7.8189 -3.8902 39 1 7.5908 7.0061 -2.8510 40 1 9.6066 9.3288 -4.8767 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167266102.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:45 Heat of formation + Delta-G solvation = -0.193585 kcal Electronic energy + Delta-G solvation = -17269.330965 eV Core-core repulsion = 14595.371762 eV Total energy + Delta-G solvation = -2673.959203 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.48413 -36.97768 -34.35372 -33.41369 -31.87800 -29.49071 -27.88553 -25.97142 -24.74905 -22.75986 -22.19444 -21.48891 -20.22907 -18.81423 -16.85603 -16.31687 -15.63828 -15.08526 -14.76875 -14.46327 -14.33131 -14.10350 -13.98080 -13.20139 -13.01017 -12.89370 -12.30481 -12.25481 -12.15565 -11.80640 -11.73754 -11.56238 -11.37448 -11.34659 -11.04652 -10.81690 -10.57780 -10.55267 -10.51426 -9.68832 -9.33342 -9.05950 -8.48855 -8.39612 -8.32147 -8.18033 -5.97505 -3.99523 1.01793 1.64572 2.08824 2.73469 3.35455 3.39374 3.42339 4.30986 4.49723 4.58091 4.77231 4.82843 5.04270 5.06927 5.19854 5.25934 5.38243 5.46624 5.53158 5.57876 5.64487 5.65827 5.73427 5.84073 5.89129 5.90505 6.03711 6.15920 6.30869 6.32886 6.50416 6.72766 6.77078 7.14806 7.29416 7.56091 7.70402 7.85483 8.02869 8.46254 9.07449 9.64312 11.13942 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.035715 B = 0.003001 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.797737 B = 9329.537931 C = 9743.296377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.051 4.051 3 C -0.193 4.193 4 C -0.135 4.135 5 C -0.149 4.149 6 C -0.146 4.146 7 C 0.148 3.852 8 H 0.094 0.906 9 C -0.178 4.178 10 N -0.684 5.684 11 C 0.060 3.940 12 C -0.107 4.107 13 C 0.023 3.977 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 S 0.122 5.878 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.338 0.662 34 H 0.027 0.973 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.050 -13.334 11.232 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.090 4.090 3 C -0.310 4.310 4 C -0.166 4.166 5 C -0.179 4.179 6 C -0.264 4.264 7 C 0.036 3.964 8 H 0.112 0.888 9 C -0.237 4.237 10 N -0.314 5.314 11 C -0.068 4.068 12 C -0.145 4.145 13 C -0.015 4.015 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 S 0.387 5.613 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.150 0.850 29 H 0.152 0.848 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.156 0.844 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.032 0.968 39 H 0.034 0.966 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.563 -13.805 10.020 24.484 hybrid contribution 0.214 0.938 0.450 1.062 sum -17.349 -12.867 10.470 24.004 Atomic orbital electron populations 1.21787 0.94588 1.01728 1.02375 1.20046 0.95917 0.90068 1.03004 1.24506 1.09304 1.00849 0.96388 1.19950 1.03522 0.94162 0.98926 1.19969 1.04949 0.97200 0.95772 1.24535 1.06183 0.99409 0.96286 1.20008 0.92562 0.89111 0.94702 0.88779 1.22514 0.98583 1.00576 1.02037 1.60679 1.21018 1.43827 1.05915 1.22169 0.94015 0.90036 1.00571 1.21624 0.97395 1.01290 0.94189 1.19055 0.93316 0.92255 0.96849 1.21221 1.17817 1.04626 1.12082 0.92721 1.25026 0.97394 0.95178 0.96923 1.69955 1.34697 1.09293 1.39707 0.86654 0.80384 0.77685 0.83254 1.20268 1.21319 1.20215 1.84230 1.63347 1.04914 1.08836 0.92499 0.92245 0.92435 0.90337 0.90942 0.84961 0.84770 0.92319 0.91892 0.91646 0.84376 0.95465 0.91318 0.92501 0.93649 0.96825 0.96583 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.90 37.16 0.37 -0.66 16 2 C -0.05 -0.42 6.43 -27.88 -0.18 -0.59 16 3 C -0.19 -2.05 5.76 -36.01 -0.21 -2.26 16 4 C -0.14 -1.44 10.05 -41.21 -0.41 -1.85 16 5 C -0.15 -1.71 10.04 -41.21 -0.41 -2.12 16 6 C -0.15 -1.82 5.46 -36.00 -0.20 -2.01 16 7 C 0.15 1.88 3.02 -68.86 -0.21 1.68 16 8 H 0.09 1.20 7.78 -51.93 -0.40 0.80 16 9 C -0.18 -1.97 9.14 37.16 0.34 -1.63 16 10 N -0.68 -10.18 6.01 -107.95 -0.65 -10.83 16 11 C 0.06 1.04 5.48 -3.82 -0.02 1.02 16 12 C -0.11 -2.24 5.41 -26.73 -0.14 -2.39 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 14 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 18 Si 0.89 21.98 29.54 -169.99 -5.02 16.95 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 S 0.12 1.44 23.06 -107.50 -2.48 -1.04 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 30 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.75 7.45 -51.93 -0.39 0.36 16 33 H 0.34 4.82 8.47 -39.29 -0.33 4.49 16 34 H 0.03 0.46 7.44 -51.93 -0.39 0.07 16 35 H 0.07 1.21 8.06 -51.93 -0.42 0.80 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 344.35 15.07 5.19 5.19 Total: -1.00 -30.49 344.35 -10.81 -41.31 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.97 Total: -0.88 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: -1.63 Total: -24.12 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.09 Total: -37.41 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.48 Total: -1.04 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.49 -10.81 -41.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167266102.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.115 kcal (2) G-P(sol) polarization free energy of solvation -30.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds