Wall clock time and date at job start Mon Mar 30 2020 01:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00115 * 2 1 4 4 C 1.52999 * 109.47077 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46828 * 179.97438 * 4 3 2 6 6 C 1.35039 * 124.88415 * 125.00511 * 5 4 3 7 7 C 1.35367 * 107.23065 * 179.71118 * 6 5 4 8 8 C 1.41505 * 105.49959 * 0.26394 * 7 6 5 9 9 C 1.47712 * 126.51381 * 179.97438 * 8 7 6 10 10 O 1.21576 * 119.99774 * 353.45513 * 9 8 7 11 11 N 1.34770 * 119.99984 * 173.45259 * 9 8 7 12 12 C 1.46507 * 120.00094 * 3.52481 * 11 9 8 13 13 C 1.46495 * 120.00337 * 183.51993 * 11 9 8 14 14 C 1.50708 * 109.47293 * 90.00055 * 13 11 9 15 15 H 1.08000 * 119.99417 * 0.02562 * 14 13 11 16 16 C 1.37875 * 120.00088 * 180.02562 * 14 13 11 17 17 N 1.31512 * 119.99710 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00207 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47253 * 90.00054 * 18 16 14 20 20 H 1.48501 * 109.47231 * 209.99688 * 18 16 14 21 21 H 1.48498 * 109.47278 * 330.00368 * 18 16 14 22 22 N 1.28473 * 124.88994 * 305.19388 * 5 4 3 23 23 H 1.09000 * 109.46875 * 60.00077 * 1 2 3 24 24 H 1.08998 * 109.47004 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47185 * 300.00189 * 1 2 3 26 26 H 1.09008 * 109.46956 * 59.99787 * 3 2 1 27 27 H 1.08996 * 109.47188 * 300.00299 * 3 2 1 28 28 H 1.09009 * 109.46590 * 60.00799 * 4 3 2 29 29 H 1.08998 * 109.47401 * 300.00241 * 4 3 2 30 30 H 1.08006 * 126.38071 * 359.97438 * 6 5 4 31 31 H 1.07993 * 127.24597 * 180.27971 * 7 6 5 32 32 H 1.08998 * 109.47021 * 84.08113 * 12 11 9 33 33 H 1.08998 * 109.46902 * 204.08912 * 12 11 9 34 34 H 1.09000 * 109.46466 * 324.08197 * 12 11 9 35 35 H 1.09004 * 109.47812 * 209.99936 * 13 11 9 36 36 H 1.09005 * 109.47013 * 330.00483 * 13 11 9 37 37 H 0.96997 * 119.99980 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0256 2.9706 0.9074 7 6 5.3401 4.2424 0.5668 8 6 4.5761 4.5239 -0.5906 9 6 4.5651 5.7908 -1.3499 10 8 5.1681 6.7581 -0.9270 11 7 3.8867 5.8745 -2.5114 12 6 3.0971 4.7338 -2.9823 13 6 3.9387 7.1060 -3.3030 14 6 5.0902 7.0318 -4.2724 15 1 5.7200 6.1548 -4.2966 16 6 5.3397 8.0835 -5.1284 17 7 6.3449 8.0189 -5.9739 18 14 4.2500 9.6001 -5.0870 19 1 4.8034 10.5811 -4.1191 20 1 4.2019 10.2122 -6.4391 21 1 2.8784 9.2130 -4.6697 22 7 3.8757 3.4408 -0.8618 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8574 0.6436 -0.8893 29 1 3.8568 0.6439 0.8908 30 1 5.4199 2.4157 1.7460 31 1 6.0292 4.9030 1.0718 32 1 2.1143 4.7530 -2.5112 33 1 2.9826 4.7933 -4.0646 34 1 3.6071 3.8065 -2.7214 35 1 3.0061 7.2229 -3.8551 36 1 4.0773 7.9592 -2.6390 37 1 6.5202 8.7587 -6.5763 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189102719.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:37 Heat of formation + Delta-G solvation = -7.118000 kcal Electronic energy + Delta-G solvation = -20141.213420 eV Core-core repulsion = 16920.660737 eV Total energy + Delta-G solvation = -3220.552683 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.65867 -40.40193 -38.95091 -36.71441 -35.04476 -34.60307 -31.88682 -30.93688 -29.93448 -27.63150 -27.21191 -25.68043 -24.10989 -22.71117 -22.11631 -20.24283 -19.15754 -18.49683 -17.78832 -17.50761 -17.11199 -16.97541 -16.67329 -16.20872 -15.92784 -15.31115 -14.94091 -14.72645 -14.48506 -14.26969 -13.95538 -13.78405 -13.72800 -13.24724 -13.01252 -12.95473 -12.55997 -12.43706 -12.29245 -12.06087 -11.76223 -11.54943 -11.02735 -10.83489 -10.74012 -10.21577 -10.06411 -9.42815 -8.34749 -6.41043 0.56701 1.21755 1.33227 1.37554 1.38298 1.47138 2.21796 2.31606 2.49146 2.82210 2.99068 3.39707 3.76650 3.86694 4.01025 4.11365 4.25302 4.45800 4.48587 4.51691 4.63019 4.66015 4.69911 4.73323 4.77334 4.81561 4.86482 4.91822 5.00564 5.34952 5.42650 5.60511 5.89115 6.05172 6.22133 6.56316 6.59635 6.88617 7.17697 7.32367 8.82493 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.026623 B = 0.004277 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.485743 B = 6544.396013 C = 7122.475633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.053 3.947 4 C 0.121 3.879 5 N -0.281 5.281 6 C 0.016 3.984 7 C -0.207 4.207 8 C -0.035 4.035 9 C 0.580 3.420 10 O -0.586 6.586 11 N -0.593 5.593 12 C 0.085 3.915 13 C 0.223 3.777 14 C -0.542 4.542 15 H 0.025 0.975 16 C 0.012 3.988 17 N -0.944 5.944 18 Si 0.952 3.048 19 H -0.273 1.273 20 H -0.272 1.272 21 H -0.238 1.238 22 N -0.266 5.266 23 H 0.045 0.955 24 H 0.105 0.895 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.107 0.893 29 H 0.150 0.850 30 H 0.236 0.764 31 H 0.160 0.840 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.025 0.975 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.509 -18.451 15.721 27.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.024 4.024 4 C 0.002 3.998 5 N -0.070 5.070 6 C -0.127 4.127 7 C -0.235 4.235 8 C -0.193 4.193 9 C 0.367 3.633 10 O -0.465 6.465 11 N -0.323 5.323 12 C -0.057 4.057 13 C 0.101 3.899 14 C -0.580 4.580 15 H 0.043 0.957 16 C -0.186 4.186 17 N -0.584 5.584 18 Si 0.774 3.226 19 H -0.198 1.198 20 H -0.197 1.197 21 H -0.161 1.161 22 N -0.103 5.103 23 H 0.064 0.936 24 H 0.123 0.877 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.125 0.875 29 H 0.167 0.833 30 H 0.252 0.748 31 H 0.177 0.823 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.878 -18.607 15.013 27.156 hybrid contribution 0.556 1.483 -0.046 1.585 sum -12.321 -17.123 14.967 25.866 Atomic orbital electron populations 1.22964 0.78805 1.04248 1.00884 1.87744 1.21852 1.26716 1.95681 1.22569 0.92602 0.85447 1.01830 1.21985 0.92569 0.76956 1.08249 1.45857 1.30872 1.11942 1.18347 1.23472 0.95951 0.95022 0.98215 1.21990 1.05308 0.98114 0.98060 1.21813 1.03555 0.93548 1.00415 1.17580 0.78627 0.86321 0.80748 1.90691 1.46367 1.39003 1.70457 1.47804 1.47321 1.16705 1.20478 1.22085 0.95298 0.88468 0.99852 1.19448 0.96710 0.83703 0.90016 1.21527 1.13895 1.03571 1.19010 0.95661 1.25881 0.96740 1.01874 0.94113 1.70050 1.31108 1.33925 1.23344 0.85659 0.80412 0.78484 0.78071 1.19849 1.19665 1.16129 1.73629 1.23230 0.97722 1.15716 0.93595 0.87699 0.93049 0.92195 0.92703 0.87491 0.83254 0.74815 0.82281 0.91280 0.91481 0.89037 0.92758 0.95731 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.40 -5.80 10.70 -148.98 -1.59 -7.39 16 3 C 0.05 0.76 6.04 71.98 0.43 1.19 16 4 C 0.12 1.50 6.77 86.38 0.58 2.09 16 5 N -0.28 -5.82 3.41 -347.94 -1.19 -7.01 16 6 C 0.02 0.30 11.40 83.54 0.95 1.25 16 7 C -0.21 -6.07 10.81 22.41 0.24 -5.83 16 8 C -0.03 -1.30 6.82 42.46 0.29 -1.01 16 9 C 0.58 27.67 7.68 86.75 0.67 28.34 16 10 O -0.59 -32.43 16.49 -3.96 -0.07 -32.50 16 11 N -0.59 -27.77 2.86 -854.70 -2.44 -30.21 16 12 C 0.09 3.10 9.63 127.77 1.23 4.33 16 13 C 0.22 11.70 4.23 85.64 0.36 12.06 16 14 C -0.54 -33.63 9.94 25.60 0.25 -33.38 16 15 H 0.02 1.76 8.06 -2.91 -0.02 1.73 16 16 C 0.01 0.73 5.47 84.65 0.46 1.20 16 17 N -0.94 -61.29 13.96 21.45 0.30 -60.99 16 18 Si 0.95 45.64 27.47 68.60 1.88 47.52 16 19 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 22 N -0.27 -7.95 8.19 -48.18 -0.39 -8.34 16 23 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 24 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.05 0.96 8.08 -2.39 -0.02 0.94 16 28 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.15 0.74 8.04 -2.39 -0.02 0.72 16 30 H 0.24 1.65 8.06 -2.91 -0.02 1.62 16 31 H 0.16 4.59 8.06 -2.91 -0.02 4.57 16 32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.07 2.43 8.03 -2.39 -0.02 2.41 16 34 H 0.09 3.19 5.36 -2.39 -0.01 3.18 16 35 H 0.05 2.59 7.13 -2.39 -0.02 2.57 16 36 H 0.02 1.36 6.80 -2.38 -0.02 1.34 16 37 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 Total: -1.00 -84.82 318.40 4.23 -80.59 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 1.00 Total: 6.55 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 6.73 Total: 11.77 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -3.72 Total: -106.54 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -1.66 Total: -39.89 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.88 Total: 47.52 kcal Total: -84.82 4.23 -80.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189102719.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.469 kcal (2) G-P(sol) polarization free energy of solvation -84.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds