Wall clock time and date at job start Mon Mar 30 2020 00:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35771 * 117.00523 * 2 1 4 4 C 1.35590 * 126.08250 * 178.12300 * 3 2 1 5 5 C 1.41060 * 107.79284 * 180.13988 * 4 3 2 6 6 C 1.47724 * 125.98175 * 179.86147 * 5 4 3 7 7 O 1.21572 * 119.99555 * 5.76378 * 6 5 4 8 8 N 1.34775 * 120.00003 * 185.76331 * 6 5 4 9 9 C 1.46497 * 120.00156 * 5.46288 * 8 6 5 10 10 C 1.46503 * 119.99811 * 185.46039 * 8 6 5 11 11 H 1.09005 * 109.46915 * 359.97438 * 10 8 6 12 12 C 1.52993 * 109.47122 * 240.00223 * 10 8 6 13 13 C 1.50695 * 109.47400 * 119.99862 * 10 8 6 14 14 H 1.08006 * 119.99625 * 35.01027 * 13 10 8 15 15 C 1.37870 * 120.00568 * 215.01329 * 13 10 8 16 16 N 1.31516 * 120.00671 * 184.92208 * 15 13 10 17 17 Si 1.86806 * 119.99799 * 4.92329 * 15 13 10 18 18 H 1.48494 * 109.47447 * 84.86186 * 17 15 13 19 19 H 1.48507 * 109.47169 * 204.86601 * 17 15 13 20 20 H 1.48503 * 109.46852 * 324.86167 * 17 15 13 21 21 N 1.31864 * 108.04135 * 359.60264 * 5 4 3 22 22 N 1.35838 * 126.08190 * 357.82419 * 3 2 1 23 23 C 1.46506 * 125.95185 * 0.02562 * 22 3 2 24 24 H 1.09006 * 109.46663 * 52.50710 * 1 2 3 25 25 H 1.08997 * 109.47152 * 172.50592 * 1 2 3 26 26 H 1.09002 * 109.47169 * 292.51265 * 1 2 3 27 27 H 1.07991 * 126.10779 * 0.02562 * 4 3 2 28 28 H 1.09003 * 109.46934 * 275.49068 * 9 8 6 29 29 H 1.08991 * 109.47312 * 35.49133 * 9 8 6 30 30 H 1.09006 * 109.47177 * 155.49878 * 9 8 6 31 31 H 1.09002 * 109.47344 * 294.88192 * 12 10 8 32 32 H 1.09006 * 109.47509 * 174.88556 * 12 10 8 33 33 H 1.09002 * 109.47613 * 54.88325 * 12 10 8 34 34 H 0.97001 * 120.00064 * 179.97438 * 16 15 13 35 35 H 1.08996 * 109.47212 * 277.08156 * 23 22 3 36 36 H 1.09009 * 109.46635 * 37.07338 * 23 22 3 37 37 H 1.08995 * 109.47268 * 157.07149 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 3.3839 1.4239 0.0359 5 6 3.5978 2.8181 0.0247 6 6 4.9103 3.4951 0.0569 7 8 5.9332 2.8413 -0.0086 8 7 4.9739 4.8375 0.1590 9 6 3.7488 5.6158 0.3582 10 6 6.2680 5.5184 0.0707 11 1 7.0572 4.7810 -0.0763 12 6 6.5273 6.2907 1.3657 13 6 6.2530 6.4773 -1.0917 14 1 5.3448 7.0038 -1.3456 15 6 7.3984 6.6824 -1.8311 16 7 7.4129 7.5895 -2.7833 17 14 8.9300 5.6720 -1.4804 18 1 8.8528 4.3845 -2.2163 19 1 10.1314 6.4241 -1.9234 20 1 9.0232 5.4042 -0.0227 21 7 2.4212 3.4113 -0.0253 22 7 1.4314 2.4206 -0.0417 23 6 -0.0146 2.6503 -0.0941 24 1 -0.3633 0.6256 -0.8154 25 1 -0.3633 -1.0189 -0.1340 26 1 -0.3633 0.3935 0.9494 27 1 4.1495 0.6630 0.0692 28 1 3.2797 5.8082 -0.6067 29 1 3.0611 5.0552 0.9912 30 1 3.9942 6.5632 0.8381 31 1 5.7906 7.0877 1.4672 32 1 7.5278 6.7225 1.3372 33 1 6.4483 5.6126 2.2154 34 1 8.2190 7.7340 -3.3032 35 1 -0.3591 2.5644 -1.1246 36 1 -0.5229 1.9083 0.5219 37 1 -0.2377 3.6488 0.2817 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274625651.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:14 Heat of formation + Delta-G solvation = 40.111743 kcal Electronic energy + Delta-G solvation = -20728.520031 eV Core-core repulsion = 17510.015384 eV Total energy + Delta-G solvation = -3218.504647 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.55654 -39.11754 -38.05627 -35.39085 -33.53745 -32.58487 -30.73529 -29.57731 -27.98083 -26.43883 -26.10735 -25.18682 -23.19949 -21.47276 -20.31904 -18.66778 -17.58610 -16.93534 -16.82440 -16.16236 -15.65155 -15.28218 -14.92684 -14.76670 -14.33805 -14.02230 -13.89558 -13.24420 -13.09258 -12.89233 -12.52157 -12.28853 -12.19500 -11.78135 -11.60090 -11.48467 -11.31198 -10.99325 -10.66831 -10.41299 -10.33104 -9.75069 -9.35905 -9.16174 -9.07333 -8.55891 -8.35771 -7.60528 -6.12073 -4.14075 1.58688 2.15421 2.37211 2.77258 3.36501 3.43565 3.51039 3.81899 3.97128 4.18669 4.43581 4.48127 4.60112 4.79546 4.89031 4.93498 5.17333 5.26328 5.34722 5.52262 5.91365 5.97487 6.01834 6.22078 6.32661 6.46220 6.47745 6.59972 6.68603 6.97861 7.12302 7.25360 7.43129 7.56969 7.68060 8.18856 8.52878 8.89153 8.93653 9.50297 10.99840 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.032521 B = 0.004906 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.776206 B = 5706.125448 C = 5965.709057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.290 6.290 3 C 0.261 3.739 4 C -0.235 4.235 5 C 0.072 3.928 6 C 0.582 3.418 7 O -0.543 6.543 8 N -0.571 5.571 9 C 0.091 3.909 10 C 0.222 3.778 11 H 0.066 0.934 12 C -0.147 4.147 13 C -0.523 4.523 14 H 0.079 0.921 15 C 0.080 3.920 16 N -0.892 5.892 17 Si 0.873 3.127 18 H -0.270 1.270 19 H -0.288 1.288 20 H -0.262 1.262 21 N -0.242 5.242 22 N -0.403 5.403 23 C 0.080 3.920 24 H 0.064 0.936 25 H 0.106 0.894 26 H 0.061 0.939 27 H 0.163 0.837 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.028 0.972 34 H 0.266 0.734 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.972 -11.257 7.327 21.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.197 6.197 3 C 0.095 3.905 4 C -0.265 4.265 5 C -0.096 4.096 6 C 0.366 3.634 7 O -0.420 6.420 8 N -0.301 5.301 9 C -0.053 4.053 10 C 0.122 3.878 11 H 0.083 0.917 12 C -0.206 4.206 13 C -0.562 4.562 14 H 0.097 0.903 15 C -0.124 4.124 16 N -0.529 5.529 17 Si 0.700 3.300 18 H -0.195 1.195 19 H -0.214 1.214 20 H -0.186 1.186 21 N -0.073 5.073 22 N -0.200 5.200 23 C -0.061 4.061 24 H 0.082 0.918 25 H 0.124 0.876 26 H 0.080 0.920 27 H 0.181 0.819 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.952 -10.669 7.101 21.251 hybrid contribution 0.635 -1.067 -0.078 1.244 sum -16.317 -11.736 7.024 21.291 Atomic orbital electron populations 1.23610 0.78372 1.05029 1.01372 1.86288 1.21311 1.21972 1.90116 1.19549 0.91076 0.78848 1.00990 1.20360 0.91775 0.95850 1.18543 1.22211 0.93236 0.92865 1.01284 1.17022 0.85494 0.82522 0.78338 1.90740 1.34150 1.64968 1.52139 1.48272 1.10011 1.04492 1.67287 1.21735 0.86019 0.96180 1.01350 1.19409 0.81339 0.92445 0.94588 0.91665 1.22219 1.01475 0.99692 0.97187 1.21124 0.98975 1.23688 1.12365 0.90303 1.24955 0.98643 0.94640 0.94180 1.69890 1.29040 1.32418 1.21512 0.86914 0.82441 0.80856 0.79826 1.19531 1.21367 1.18642 1.78079 0.95195 1.09744 1.24235 1.49257 1.06955 1.03181 1.60610 1.22439 0.75173 1.05290 1.03207 0.91791 0.87567 0.92047 0.81921 0.92680 0.91485 0.91187 0.93031 0.92447 0.95284 0.92403 0.90604 0.89029 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.41 101.05 0.95 1.02 16 2 O -0.29 -3.33 10.57 -19.02 -0.20 -3.53 16 3 C 0.26 3.70 7.78 -16.72 -0.13 3.57 16 4 C -0.24 -4.01 10.60 -39.46 -0.42 -4.43 16 5 C 0.07 1.38 6.73 -82.91 -0.56 0.82 16 6 C 0.58 13.23 7.67 -12.39 -0.09 13.14 16 7 O -0.54 -13.85 16.25 5.30 0.09 -13.76 16 8 N -0.57 -12.89 2.75 -176.43 -0.49 -13.38 16 9 C 0.09 1.71 8.35 59.85 0.50 2.21 16 10 C 0.22 5.55 2.28 -69.09 -0.16 5.40 16 11 H 0.07 1.77 4.06 -51.93 -0.21 1.56 16 12 C -0.15 -3.18 9.06 37.15 0.34 -2.84 16 13 C -0.52 -14.74 8.82 -34.45 -0.30 -15.05 16 14 H 0.08 2.36 7.67 -52.48 -0.40 1.96 16 15 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 16 N -0.89 -27.15 13.96 55.43 0.77 -26.37 16 17 Si 0.87 22.45 26.99 -169.99 -4.59 17.87 16 18 H -0.27 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 20 H -0.26 -6.48 6.82 56.52 0.39 -6.10 16 21 N -0.24 -4.09 9.32 33.34 0.31 -3.78 16 22 N -0.40 -5.35 4.03 -68.18 -0.28 -5.62 16 23 C 0.08 0.59 9.59 59.85 0.57 1.17 16 24 H 0.06 0.32 5.86 -51.93 -0.30 0.01 16 25 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.28 6.53 -51.93 -0.34 -0.06 16 27 H 0.16 2.67 8.06 -52.49 -0.42 2.25 16 28 H 0.05 1.06 8.13 -51.93 -0.42 0.64 16 29 H 0.07 1.13 5.95 -51.93 -0.31 0.82 16 30 H 0.07 1.25 6.54 -51.93 -0.34 0.91 16 31 H 0.05 1.04 6.87 -51.93 -0.36 0.68 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.08 0.46 7.61 -51.93 -0.40 0.07 16 36 H 0.09 0.42 4.66 -51.92 -0.24 0.18 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 303.46 15.07 4.57 4.57 Total: -1.00 -35.12 303.46 -3.79 -38.91 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -4.59 Total: -2.11 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 0.60 Total: 7.21 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.32 Total: -49.15 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.11 Total: -17.30 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.59 Total: 17.87 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.12 -3.79 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274625651.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.026 kcal (2) G-P(sol) polarization free energy of solvation -35.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds