Wall clock time and date at job start Mon Mar 30 2020 00:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99965 * 2 1 3 5 5 C 1.35243 * 126.69230 * 119.99825 * 4 2 1 6 6 C 1.42027 * 103.96005 * 180.02562 * 5 4 2 7 7 N 1.39483 * 126.89778 * 179.97438 * 6 5 4 8 8 C 1.34775 * 119.99864 * 359.97438 * 7 6 5 9 9 O 1.21575 * 119.99975 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99776 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99635 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.47163 * 324.99861 * 11 10 8 13 13 C 1.52995 * 109.47068 * 85.00496 * 11 10 8 14 14 C 1.50698 * 109.46646 * 205.00056 * 11 10 8 15 15 H 1.08004 * 120.00052 * 0.02562 * 14 11 10 16 16 C 1.37879 * 119.99816 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00151 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 120.00024 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47302 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47023 * 120.00596 * 18 16 14 21 21 H 1.48500 * 109.47339 * 240.00659 * 18 16 14 22 22 N 1.30730 * 106.20686 * 0.02562 * 6 5 4 23 23 O 1.20917 * 111.47530 * 359.70369 * 22 6 5 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 28 28 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 29 29 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 31 31 H 1.08006 * 128.02285 * 0.03011 * 5 4 2 32 32 H 0.96997 * 119.99688 * 180.02562 * 7 6 5 33 33 H 0.96997 * 119.99776 * 0.02562 * 10 8 7 34 34 H 1.09004 * 109.47238 * 299.99614 * 13 11 10 35 35 H 1.08991 * 109.47547 * 59.99502 * 13 11 10 36 36 H 1.09000 * 109.47342 * 180.02562 * 13 11 10 37 37 H 0.96995 * 120.00091 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8130 -1.8143 1.2641 6 6 2.9904 -2.0663 2.6506 7 7 3.7234 -3.1041 3.2260 8 6 4.3552 -3.9989 2.4408 9 8 4.2866 -3.9012 1.2309 10 7 5.0639 -5.0015 2.9968 11 6 5.7511 -5.9738 2.1432 12 1 5.1571 -6.1547 1.2474 13 6 7.1215 -5.4231 1.7439 14 6 5.9295 -7.2664 2.8972 15 1 5.5668 -7.3549 3.9106 16 6 6.5547 -8.3364 2.2928 17 7 6.9959 -8.2288 1.0586 18 14 6.7764 -9.9384 3.2276 19 1 6.1975 -9.8018 4.5882 20 1 6.0839 -11.0341 2.5031 21 1 8.2238 -10.2530 3.3344 22 7 2.3280 -1.1308 3.2791 23 8 1.7963 -0.3688 2.5054 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 3.2095 -2.3744 0.4301 32 1 3.7778 -3.1823 4.1913 33 1 5.1189 -5.0792 3.9621 34 1 6.9926 -4.4881 1.1986 35 1 7.7155 -5.2422 2.6397 36 1 7.6327 -6.1463 1.1085 37 1 7.4361 -8.9814 0.6335 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274848246.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:01 Heat of formation + Delta-G solvation = 3.255114 kcal Electronic energy + Delta-G solvation = -20067.578158 eV Core-core repulsion = 16847.475287 eV Total energy + Delta-G solvation = -3220.102871 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.90673 -41.31876 -37.39485 -36.95108 -36.26212 -34.54781 -33.16677 -31.57464 -30.54667 -28.00363 -27.35139 -25.07852 -24.18158 -23.37198 -21.80515 -21.29845 -19.90783 -18.65776 -18.14068 -18.02889 -17.61953 -16.83156 -16.43273 -16.16404 -15.68673 -15.24651 -14.96786 -14.44092 -14.33997 -14.10212 -13.85744 -13.16645 -12.99605 -12.97158 -12.78032 -12.65061 -12.64089 -12.32566 -12.28152 -12.15361 -12.11815 -11.74580 -11.33068 -11.11425 -10.63318 -10.45025 -10.12303 -9.62896 -8.18995 -6.35941 0.42499 1.11442 1.23242 1.45126 1.47334 1.58465 2.15016 2.19245 2.40620 3.09727 3.13667 3.34384 3.81694 3.99509 4.05677 4.17542 4.36007 4.62537 4.72019 4.84817 4.87006 4.93041 4.98987 5.01762 5.06739 5.15454 5.31496 5.35048 5.39016 5.40442 5.55702 5.57760 5.76987 6.03610 6.08368 6.70415 7.00582 7.28952 7.31475 7.50009 8.87717 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.041722 B = 0.003580 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.955240 B = 7819.895860 C = 8041.686123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.013 4.013 3 C -0.146 4.146 4 C 0.002 3.998 5 C -0.249 4.249 6 C 0.258 3.742 7 N -0.636 5.636 8 C 0.704 3.296 9 O -0.609 6.609 10 N -0.706 5.706 11 C 0.289 3.711 12 H 0.006 0.994 13 C -0.136 4.136 14 C -0.548 4.548 15 H 0.074 0.926 16 C 0.017 3.983 17 N -0.915 5.915 18 Si 0.973 3.027 19 H -0.261 1.261 20 H -0.284 1.284 21 H -0.279 1.279 22 N -0.410 5.410 23 O 0.096 5.904 24 H 0.092 0.908 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.111 0.889 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.174 0.826 32 H 0.426 0.574 33 H 0.406 0.594 34 H 0.014 0.986 35 H 0.040 0.960 36 H 0.070 0.930 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.928 15.734 0.900 18.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.033 4.033 3 C -0.203 4.203 4 C -0.062 4.062 5 C -0.273 4.273 6 C 0.008 3.992 7 N -0.292 5.292 8 C 0.403 3.597 9 O -0.488 6.488 10 N -0.359 5.359 11 C 0.185 3.815 12 H 0.024 0.976 13 C -0.195 4.195 14 C -0.586 4.586 15 H 0.092 0.908 16 C -0.184 4.184 17 N -0.553 5.553 18 Si 0.798 3.202 19 H -0.185 1.185 20 H -0.210 1.210 21 H -0.204 1.204 22 N -0.129 5.129 23 O 0.038 5.962 24 H 0.111 0.889 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.129 0.871 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.191 0.809 32 H 0.264 0.736 33 H 0.241 0.759 34 H 0.033 0.967 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.059 15.946 0.937 18.877 hybrid contribution 0.776 -1.605 0.512 1.855 sum -9.283 14.341 1.449 17.145 Atomic orbital electron populations 1.21885 0.91825 1.02575 1.04071 1.20047 0.97684 0.96633 0.88891 1.21881 1.01199 0.93183 1.04070 1.24929 0.97726 0.95742 0.87848 1.22713 1.06806 1.01309 0.96455 1.20444 0.96233 0.91229 0.91316 1.41400 1.51296 1.25821 1.10678 1.15933 0.78903 0.79944 0.84937 1.90803 1.67784 1.76446 1.13734 1.45452 1.51939 1.27442 1.11028 1.18359 0.88769 0.84932 0.89396 0.97567 1.21937 0.99322 0.98202 1.00002 1.21545 1.39330 0.96721 1.01000 0.90768 1.25757 0.94552 1.02320 0.95739 1.70043 1.39045 1.32557 1.13660 0.85282 0.77800 0.78344 0.78799 1.18503 1.20976 1.20432 1.73993 1.16914 1.05616 1.16349 1.84702 1.55974 1.41937 1.13561 0.88882 0.92993 0.91748 0.87075 0.91749 0.92937 0.88892 0.80879 0.73618 0.75893 0.96725 0.94072 0.91154 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.18 71.98 0.66 -1.29 16 2 C -0.01 -0.22 3.34 -11.54 -0.04 -0.26 16 3 C -0.15 -1.93 9.18 71.98 0.66 -1.27 16 4 C 0.00 0.04 5.98 24.99 0.15 0.19 16 5 C -0.25 -8.22 9.78 22.52 0.22 -8.00 16 6 C 0.26 8.79 8.18 134.11 1.10 9.88 16 7 N -0.64 -21.13 5.43 -323.25 -1.75 -22.89 16 8 C 0.70 28.79 8.49 179.05 1.52 30.31 16 9 O -0.61 -29.26 13.28 -3.95 -0.05 -29.31 16 10 N -0.71 -28.86 5.07 -461.41 -2.34 -31.20 16 11 C 0.29 14.61 2.56 44.24 0.11 14.72 16 12 H 0.01 0.38 7.58 -2.38 -0.02 0.36 16 13 C -0.14 -6.73 9.26 71.98 0.67 -6.06 16 14 C -0.55 -28.30 8.73 25.60 0.22 -28.08 16 15 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 16 C 0.02 0.88 5.30 84.66 0.45 1.33 16 17 N -0.91 -51.27 11.32 21.45 0.24 -51.03 16 18 Si 0.97 41.23 29.54 68.60 2.03 43.26 16 19 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 20 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 21 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 22 N -0.41 -12.98 12.10 -56.30 -0.68 -13.66 16 23 O 0.10 2.68 11.19 71.18 0.80 3.47 16 24 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.11 1.73 8.12 -2.39 -0.02 1.71 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.17 6.40 6.22 -2.91 -0.02 6.38 16 32 H 0.43 11.16 8.84 -92.71 -0.82 10.34 16 33 H 0.41 13.73 8.55 -92.71 -0.79 12.94 16 34 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 37 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -65.62 315.78 3.45 -62.17 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: -0.51 Total: 27.70 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 5.72 Total: 11.48 kcal Atomic # 7 Polarization: -114.23 SS G_CDS: -4.53 Total: -118.77 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: 0.74 Total: -25.84 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -65.62 3.45 -62.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274848246.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.426 kcal (2) G-P(sol) polarization free energy of solvation -65.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds