Wall clock time and date at job start Mon Mar 30 2020 00:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47371 * 2 1 4 4 C 1.37094 * 120.00072 * 96.46916 * 3 2 1 5 5 H 1.08001 * 119.99778 * 169.96698 * 4 3 2 6 6 C 1.38952 * 119.99907 * 349.96454 * 4 3 2 7 7 N 1.31409 * 119.99793 * 334.60555 * 6 4 3 8 8 Si 1.86799 * 119.99731 * 154.60803 * 6 4 3 9 9 H 1.48504 * 109.47058 * 94.99703 * 8 6 4 10 10 H 1.48500 * 109.47056 * 214.99998 * 8 6 4 11 11 H 1.48501 * 109.47299 * 334.99733 * 8 6 4 12 12 C 1.34783 * 119.99991 * 276.47248 * 3 2 1 13 13 O 1.21288 * 119.99555 * 4.90278 * 12 3 2 14 14 C 1.50697 * 120.00039 * 184.90759 * 12 3 2 15 15 H 1.08995 * 109.47069 * 49.54181 * 14 12 3 16 16 O 1.42900 * 109.46916 * 169.54600 * 14 12 3 17 17 C 1.42900 * 113.99713 * 269.99713 * 16 14 12 18 18 C 1.50705 * 109.46798 * 289.54361 * 14 12 3 19 19 C 1.39867 * 126.03883 * 281.22640 * 18 14 12 20 20 N 1.30840 * 108.20000 * 179.73938 * 19 18 14 21 21 N 1.40082 * 108.20729 * 0.02562 * 20 19 18 22 22 C 1.46497 * 126.03852 * 179.97438 * 21 20 19 23 23 C 1.34951 * 107.92519 * 359.97438 * 21 20 19 24 24 H 1.08998 * 109.47217 * 185.50482 * 1 2 3 25 25 H 1.09004 * 109.47244 * 305.50291 * 1 2 3 26 26 H 1.08997 * 109.47146 * 65.50841 * 1 2 3 27 27 H 1.09000 * 109.47132 * 239.99888 * 2 1 3 28 28 H 1.09003 * 109.47218 * 119.99887 * 2 1 3 29 29 H 0.97003 * 119.99235 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47307 * 60.00077 * 17 16 14 31 31 H 1.08999 * 109.47154 * 180.02562 * 17 16 14 32 32 H 1.09006 * 109.47385 * 300.00097 * 17 16 14 33 33 H 1.08002 * 125.89573 * 359.71950 * 19 18 14 34 34 H 1.08998 * 109.47039 * 89.97077 * 22 21 20 35 35 H 1.09002 * 109.47245 * 209.97339 * 22 21 20 36 36 H 1.09001 * 109.47147 * 329.97618 * 22 21 20 37 37 H 1.08002 * 126.12713 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3730 1.9829 1.1797 5 1 2.8823 2.9352 1.1684 6 6 2.0771 1.3675 2.3899 7 7 1.0735 0.5229 2.4694 8 14 3.1059 1.7410 3.9037 9 1 2.4513 2.8139 4.6946 10 1 3.2261 0.5163 4.7349 11 1 4.4581 2.1896 3.4848 12 6 2.1190 2.0604 -1.1598 13 8 1.7224 1.5609 -2.1914 14 6 2.7243 3.4404 -1.1748 15 1 3.6743 3.4262 -0.6407 16 8 2.9436 3.8497 -2.5263 17 6 4.2280 3.4923 -3.0406 18 6 1.7847 4.4084 -0.5029 19 6 0.6415 4.9764 -1.0744 20 7 0.0852 5.7580 -0.1847 21 7 0.8584 5.7124 0.9825 22 6 0.5891 6.4424 2.2238 23 6 1.8951 4.8772 0.7616 24 1 -0.3633 -1.0229 0.0986 25 1 -0.3634 0.5968 0.8366 26 1 -0.3633 0.4260 -0.9352 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.8673 0.0931 3.3142 30 1 4.3430 2.4088 -3.0100 31 1 4.3162 3.8384 -4.0704 32 1 5.0048 3.9574 -2.4336 33 1 0.2805 4.8005 -2.0770 34 1 -0.0409 5.8346 2.8733 35 1 1.5302 6.6590 2.7294 36 1 0.0776 7.3766 1.9923 37 1 2.6733 4.6276 1.4677 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281977980.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:38 Heat of formation + Delta-G solvation = 25.892545 kcal Electronic energy + Delta-G solvation = -21701.715427 eV Core-core repulsion = 18482.594189 eV Total energy + Delta-G solvation = -3219.121238 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.74557 -38.69551 -36.73204 -34.77936 -32.92210 -31.56734 -31.09941 -29.31811 -27.66030 -25.84597 -25.13196 -24.45612 -21.85040 -20.59386 -20.10198 -19.01673 -17.21583 -16.93671 -15.83975 -15.38178 -14.94848 -14.72048 -14.56275 -14.09060 -13.78200 -13.66525 -13.29216 -12.70297 -12.60058 -12.33779 -12.24151 -12.08593 -11.89160 -11.51198 -11.20603 -11.11690 -10.87548 -10.67646 -10.47764 -10.31713 -9.93969 -9.71220 -9.60598 -8.93603 -8.81212 -8.40709 -7.81220 -7.52190 -6.42094 -3.85823 2.42809 2.97073 3.00334 3.13329 3.14436 3.33501 3.89230 4.01634 4.29586 4.89142 5.00252 5.07211 5.35983 5.38638 5.61054 5.64219 5.65791 5.80730 5.84011 6.07471 6.08891 6.20426 6.35847 6.57058 6.62860 6.78461 6.89269 7.05961 7.18352 7.28524 7.39957 7.47510 7.71339 7.74692 7.80516 8.23346 8.42066 9.05025 9.56205 9.97609 10.57276 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.013222 B = 0.010592 C = 0.007633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.147071 B = 2642.989368 C = 3667.448959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.138 3.862 3 N -0.435 5.435 4 C -0.334 4.334 5 H 0.100 0.900 6 C 0.038 3.962 7 N -0.848 5.848 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.280 1.280 11 H -0.268 1.268 12 C 0.439 3.561 13 O -0.595 6.595 14 C 0.170 3.830 15 H 0.075 0.925 16 O -0.363 6.363 17 C 0.036 3.964 18 C -0.216 4.216 19 C 0.079 3.921 20 N -0.313 5.313 21 N -0.381 5.381 22 C 0.107 3.893 23 C 0.090 3.910 24 H 0.031 0.969 25 H 0.084 0.916 26 H 0.027 0.973 27 H 0.034 0.966 28 H 0.089 0.911 29 H 0.267 0.733 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.179 0.821 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.304 7.139 1.367 8.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.015 3.985 3 N -0.155 5.155 4 C -0.462 4.462 5 H 0.117 0.883 6 C -0.167 4.167 7 N -0.486 5.486 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.205 1.205 11 H -0.193 1.193 12 C 0.227 3.773 13 O -0.480 6.480 14 C 0.108 3.892 15 H 0.092 0.908 16 O -0.280 6.280 17 C -0.060 4.060 18 C -0.228 4.228 19 C -0.107 4.107 20 N -0.134 5.134 21 N -0.163 5.163 22 C -0.035 4.035 23 C -0.056 4.056 24 H 0.050 0.950 25 H 0.103 0.897 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.196 0.804 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.871 7.728 1.312 8.348 hybrid contribution 1.282 -0.748 1.100 1.848 sum 4.154 6.980 2.412 8.473 Atomic orbital electron populations 1.21932 0.96807 0.99823 1.01178 1.21127 0.94543 0.83071 0.99711 1.43819 1.55205 1.11178 1.05289 1.19707 1.36877 1.06689 0.82913 0.88269 1.25117 0.95614 0.97269 0.98701 1.70190 1.23013 1.28963 1.26427 0.86356 0.80835 0.78373 0.81813 1.20566 1.20537 1.19265 1.20430 0.85318 0.87272 0.84315 1.90527 1.54240 1.70071 1.33196 1.19763 0.96401 0.90609 0.82414 0.90759 1.87876 1.34106 1.78460 1.27575 1.22693 0.84844 0.99715 0.98797 1.19330 1.01383 1.06954 0.95094 1.23589 0.93551 0.94562 0.98961 1.77255 1.18508 1.25239 0.92446 1.48274 1.20249 1.36218 1.11600 1.21731 1.02654 0.96674 0.82399 1.22206 0.93378 0.92816 0.97216 0.94950 0.89725 0.95350 0.94760 0.89272 0.92230 0.93964 0.90155 0.94745 0.80357 0.91016 0.89914 0.89828 0.80890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.59 37.16 0.36 -3.01 16 2 C 0.14 3.42 5.20 -4.04 -0.02 3.40 16 3 N -0.44 -10.89 2.64 -114.81 -0.30 -11.19 16 4 C -0.33 -7.95 8.15 -14.93 -0.12 -8.07 16 5 H 0.10 2.16 3.44 -52.49 -0.18 1.98 16 6 C 0.04 0.90 4.86 -17.47 -0.08 0.81 16 7 N -0.85 -20.93 8.71 55.50 0.48 -20.44 16 8 Si 0.90 17.86 29.62 -169.99 -5.04 12.83 16 9 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 10 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 11 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 12 C 0.44 10.90 6.91 -10.98 -0.08 10.83 16 13 O -0.59 -16.40 16.13 -14.14 -0.23 -16.62 16 14 C 0.17 3.58 2.18 -29.03 -0.06 3.52 16 15 H 0.07 1.44 7.04 -51.93 -0.37 1.07 16 16 O -0.36 -7.35 9.70 -54.92 -0.53 -7.88 16 17 C 0.04 0.58 10.81 101.05 1.09 1.68 16 18 C -0.22 -4.39 4.57 -105.05 -0.48 -4.87 16 19 C 0.08 1.62 11.73 -17.36 -0.20 1.42 16 20 N -0.31 -6.18 12.58 30.62 0.39 -5.79 16 21 N -0.38 -6.67 4.01 -68.16 -0.27 -6.95 16 22 C 0.11 1.31 11.47 59.85 0.69 2.00 16 23 C 0.09 1.65 9.61 -17.22 -0.17 1.48 16 24 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.08 2.21 6.43 -51.93 -0.33 1.88 16 26 H 0.03 0.70 8.00 -51.93 -0.42 0.28 16 27 H 0.03 0.84 7.70 -51.93 -0.40 0.44 16 28 H 0.09 2.23 5.96 -51.93 -0.31 1.92 16 29 H 0.27 6.28 8.31 -40.82 -0.34 5.94 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.03 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.18 3.46 8.06 -52.49 -0.42 3.04 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.17 2.78 6.64 -52.49 -0.35 2.44 16 LS Contribution 308.29 15.07 4.65 4.65 Total: -1.00 -31.01 308.29 -4.81 -35.82 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -4.87 Total: 6.41 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 0.92 Total: 9.18 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.29 Total: -44.37 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.76 Total: -24.51 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.04 Total: 12.83 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.01 -4.81 -35.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281977980.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.709 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds