Wall clock time and date at job start Mon Mar 30 2020 00:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47371 * 2 1 4 4 C 1.37094 * 120.00072 * 96.46916 * 3 2 1 5 5 H 1.08001 * 119.99778 * 169.96698 * 4 3 2 6 6 C 1.38952 * 119.99907 * 349.96454 * 4 3 2 7 7 N 1.31409 * 119.99793 * 334.60555 * 6 4 3 8 8 Si 1.86799 * 119.99731 * 154.60803 * 6 4 3 9 9 H 1.48504 * 109.47058 * 94.99703 * 8 6 4 10 10 H 1.48500 * 109.47056 * 214.99998 * 8 6 4 11 11 H 1.48501 * 109.47299 * 334.99733 * 8 6 4 12 12 C 1.34783 * 119.99991 * 276.47248 * 3 2 1 13 13 O 1.21288 * 119.99555 * 4.90278 * 12 3 2 14 14 C 1.50697 * 120.00039 * 184.90759 * 12 3 2 15 15 H 1.08995 * 109.47069 * 49.54181 * 14 12 3 16 16 O 1.42900 * 109.46916 * 169.54600 * 14 12 3 17 17 C 1.42900 * 113.99713 * 269.99713 * 16 14 12 18 18 C 1.50705 * 109.46798 * 289.54361 * 14 12 3 19 19 C 1.39867 * 126.03883 * 281.22640 * 18 14 12 20 20 N 1.30840 * 108.20000 * 179.73938 * 19 18 14 21 21 N 1.40082 * 108.20729 * 0.02562 * 20 19 18 22 22 C 1.46497 * 126.03852 * 179.97438 * 21 20 19 23 23 C 1.34951 * 107.92519 * 359.97438 * 21 20 19 24 24 H 1.08998 * 109.47217 * 185.50482 * 1 2 3 25 25 H 1.09004 * 109.47244 * 305.50291 * 1 2 3 26 26 H 1.08997 * 109.47146 * 65.50841 * 1 2 3 27 27 H 1.09000 * 109.47132 * 239.99888 * 2 1 3 28 28 H 1.09003 * 109.47218 * 119.99887 * 2 1 3 29 29 H 0.97003 * 119.99235 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47307 * 60.00077 * 17 16 14 31 31 H 1.08999 * 109.47154 * 180.02562 * 17 16 14 32 32 H 1.09006 * 109.47385 * 300.00097 * 17 16 14 33 33 H 1.08002 * 125.89573 * 359.71950 * 19 18 14 34 34 H 1.08998 * 109.47039 * 89.97077 * 22 21 20 35 35 H 1.09002 * 109.47245 * 209.97339 * 22 21 20 36 36 H 1.09001 * 109.47147 * 329.97618 * 22 21 20 37 37 H 1.08002 * 126.12713 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3730 1.9829 1.1797 5 1 2.8823 2.9352 1.1684 6 6 2.0771 1.3675 2.3899 7 7 1.0735 0.5229 2.4694 8 14 3.1059 1.7410 3.9037 9 1 2.4513 2.8139 4.6946 10 1 3.2261 0.5163 4.7349 11 1 4.4581 2.1896 3.4848 12 6 2.1190 2.0604 -1.1598 13 8 1.7224 1.5609 -2.1914 14 6 2.7243 3.4404 -1.1748 15 1 3.6743 3.4262 -0.6407 16 8 2.9436 3.8497 -2.5263 17 6 4.2280 3.4923 -3.0406 18 6 1.7847 4.4084 -0.5029 19 6 0.6415 4.9764 -1.0744 20 7 0.0852 5.7580 -0.1847 21 7 0.8584 5.7124 0.9825 22 6 0.5891 6.4424 2.2238 23 6 1.8951 4.8772 0.7616 24 1 -0.3633 -1.0229 0.0986 25 1 -0.3634 0.5968 0.8366 26 1 -0.3633 0.4260 -0.9352 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.8673 0.0931 3.3142 30 1 4.3430 2.4088 -3.0100 31 1 4.3162 3.8384 -4.0704 32 1 5.0048 3.9574 -2.4336 33 1 0.2805 4.8005 -2.0770 34 1 -0.0409 5.8346 2.8733 35 1 1.5302 6.6590 2.7294 36 1 0.0776 7.3766 1.9923 37 1 2.6733 4.6276 1.4677 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281977980.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:38 Heat of formation + Delta-G solvation = 6.317394 kcal Electronic energy + Delta-G solvation = -21702.564269 eV Core-core repulsion = 18482.594189 eV Total energy + Delta-G solvation = -3219.970080 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.20436 -40.47644 -38.33863 -36.68794 -34.23472 -33.41378 -32.74387 -31.09892 -29.01184 -27.10735 -26.83634 -26.12907 -23.71795 -22.00583 -21.68263 -20.79052 -18.96775 -18.45719 -17.48475 -17.00385 -16.36514 -16.18898 -16.13327 -15.80587 -15.32846 -15.18351 -14.99917 -14.36058 -14.03991 -13.89384 -13.78752 -13.46792 -13.29071 -13.11249 -12.83735 -12.74126 -12.61238 -12.28647 -12.12532 -12.02236 -11.59438 -11.43345 -11.26152 -10.80176 -10.25120 -10.07245 -9.70985 -9.12158 -8.21364 -5.72202 1.00235 1.43110 1.55288 1.64460 1.72610 1.78839 2.13698 2.34086 2.73681 3.18140 3.33270 3.80628 3.98454 4.21900 4.31279 4.38959 4.44573 4.49319 4.56483 4.66418 4.68799 4.72499 4.80596 4.87522 4.92056 4.94456 5.07819 5.13239 5.41225 5.47317 5.67672 5.79509 5.89133 6.17278 6.27195 6.55603 6.77656 7.21110 7.69158 8.10637 8.79066 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.013222 B = 0.010592 C = 0.007633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.147071 B = 2642.989368 C = 3667.448959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.139 3.861 3 N -0.442 5.442 4 C -0.352 4.352 5 H 0.120 0.880 6 C -0.001 4.001 7 N -0.877 5.877 8 Si 0.970 3.030 9 H -0.269 1.269 10 H -0.290 1.290 11 H -0.253 1.253 12 C 0.423 3.577 13 O -0.635 6.635 14 C 0.182 3.818 15 H 0.092 0.908 16 O -0.382 6.382 17 C 0.029 3.971 18 C -0.241 4.241 19 C 0.060 3.940 20 N -0.329 5.329 21 N -0.376 5.376 22 C 0.094 3.906 23 C 0.097 3.903 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.009 0.991 27 H 0.027 0.973 28 H 0.086 0.914 29 H 0.268 0.732 30 H 0.025 0.975 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.174 0.826 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.794 8.596 3.385 10.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.016 3.984 3 N -0.161 5.161 4 C -0.478 4.478 5 H 0.137 0.863 6 C -0.203 4.203 7 N -0.515 5.515 8 Si 0.793 3.207 9 H -0.194 1.194 10 H -0.216 1.216 11 H -0.176 1.176 12 C 0.212 3.788 13 O -0.524 6.524 14 C 0.120 3.880 15 H 0.110 0.890 16 O -0.300 6.300 17 C -0.067 4.067 18 C -0.253 4.253 19 C -0.125 4.125 20 N -0.152 5.152 21 N -0.158 5.158 22 C -0.045 4.045 23 C -0.050 4.050 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.028 0.972 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.191 0.809 34 H 0.093 0.907 35 H 0.137 0.863 36 H 0.117 0.883 37 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 4.360 9.217 3.341 10.730 hybrid contribution 0.772 -1.220 0.508 1.531 sum 5.133 7.997 3.849 10.252 Atomic orbital electron populations 1.21749 0.96600 1.00570 0.99148 1.21082 0.94647 0.83674 0.99045 1.44082 1.54755 1.11108 1.06117 1.20173 1.37332 1.07759 0.82565 0.86304 1.25980 0.95997 0.96952 1.01408 1.70293 1.24092 1.29880 1.27262 0.85276 0.79731 0.77914 0.77743 1.19394 1.21629 1.17650 1.21239 0.85244 0.88647 0.83667 1.90480 1.56115 1.71349 1.34492 1.19592 0.96842 0.88343 0.83214 0.89031 1.87858 1.36404 1.78271 1.27437 1.22943 0.83999 0.99037 1.00694 1.19441 1.01766 1.07880 0.96228 1.23626 0.94200 0.95427 0.99282 1.77185 1.19206 1.25421 0.93367 1.48709 1.19261 1.35687 1.12119 1.22200 1.05018 0.96830 0.80501 1.22538 0.93774 0.92030 0.96696 0.92850 0.91573 0.97198 0.95465 0.89580 0.92208 0.95639 0.87727 0.91952 0.80936 0.90742 0.86327 0.88259 0.78346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.03 9.59 71.98 0.69 -5.34 16 2 C 0.14 6.96 5.20 86.38 0.45 7.41 16 3 N -0.44 -22.18 2.64 -635.54 -1.68 -23.86 16 4 C -0.35 -16.22 8.15 84.04 0.68 -15.54 16 5 H 0.12 4.87 3.44 -2.91 -0.01 4.86 16 6 C 0.00 -0.02 4.86 84.93 0.41 0.39 16 7 N -0.88 -42.75 8.71 21.66 0.19 -42.56 16 8 Si 0.97 34.60 29.62 68.60 2.03 36.63 16 9 H -0.27 -9.10 7.11 99.48 0.71 -8.40 16 10 H -0.29 -10.81 7.11 99.48 0.71 -10.11 16 11 H -0.25 -8.39 7.11 99.48 0.71 -7.68 16 12 C 0.42 21.26 6.91 87.66 0.61 21.87 16 13 O -0.64 -36.15 16.13 15.77 0.25 -35.90 16 14 C 0.18 7.56 2.18 29.10 0.06 7.62 16 15 H 0.09 3.39 7.04 -2.39 -0.02 3.37 16 16 O -0.38 -15.37 9.70 -130.15 -1.26 -16.63 16 17 C 0.03 0.91 10.81 113.37 1.23 2.13 16 18 C -0.24 -9.61 4.57 -20.14 -0.09 -9.70 16 19 C 0.06 2.45 11.73 85.24 1.00 3.45 16 20 N -0.33 -12.76 12.58 -57.02 -0.72 -13.48 16 21 N -0.38 -12.28 4.01 -369.57 -1.48 -13.76 16 22 C 0.09 1.98 11.47 127.77 1.47 3.44 16 23 C 0.10 3.32 9.61 83.54 0.80 4.12 16 24 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.07 3.51 6.43 -2.38 -0.02 3.49 16 26 H 0.01 0.47 8.00 -2.39 -0.02 0.45 16 27 H 0.03 1.37 7.70 -2.39 -0.02 1.35 16 28 H 0.09 4.34 5.96 -2.39 -0.01 4.33 16 29 H 0.27 12.43 8.31 -92.71 -0.77 11.66 16 30 H 0.02 0.85 8.14 -2.39 -0.02 0.84 16 31 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.06 1.56 8.09 -2.38 -0.02 1.54 16 33 H 0.17 7.00 8.06 -2.91 -0.02 6.97 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.20 5.59 6.64 -2.91 -0.02 5.57 16 Total: -1.00 -67.26 308.29 5.72 -61.54 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 1.08 Total: 28.15 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 7.31 Total: 19.86 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -3.69 Total: -93.65 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -1.01 Total: -52.53 kcal Atomic # 14 Polarization: 34.60 SS G_CDS: 2.03 Total: 36.63 kcal Total: -67.26 5.72 -61.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281977980.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.859 kcal (2) G-P(sol) polarization free energy of solvation -67.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds