Wall clock time and date at job start Mon Mar 30 2020 01:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42903 * 114.00319 * 2 1 4 4 C 1.52997 * 109.47474 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47220 * 179.97438 * 4 3 2 6 6 C 1.34965 * 125.97705 * 124.98369 * 5 4 3 7 7 C 1.35238 * 107.86346 * 180.02562 * 6 5 4 8 8 C 1.40410 * 107.86643 * 359.97438 * 7 6 5 9 9 N 1.40158 * 125.97643 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99807 * 0.02562 * 9 8 7 11 11 O 1.21294 * 119.99808 * 359.97438 * 10 9 8 12 12 C 1.50696 * 120.00035 * 180.02562 * 10 9 8 13 13 C 1.52999 * 109.47203 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47508 * 179.97438 * 13 12 10 15 15 H 1.07997 * 119.99404 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00110 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99895 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99672 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46832 * 90.00458 * 18 16 14 20 20 H 1.48493 * 109.47206 * 210.00213 * 18 16 14 21 21 H 1.48497 * 109.47209 * 330.00511 * 18 16 14 22 22 N 1.31224 * 108.05286 * 359.97438 * 8 7 6 23 23 H 1.09004 * 109.47450 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46961 * 300.00376 * 1 2 3 25 25 H 1.08999 * 109.47566 * 60.00188 * 1 2 3 26 26 H 1.09001 * 109.47241 * 59.99413 * 3 2 1 27 27 H 1.09005 * 109.46883 * 300.00071 * 3 2 1 28 28 H 1.09004 * 109.47173 * 59.99870 * 4 3 2 29 29 H 1.08995 * 109.46974 * 299.99859 * 4 3 2 30 30 H 1.07999 * 126.06888 * 0.05322 * 6 5 4 31 31 H 1.07998 * 126.07029 * 179.97438 * 7 6 5 32 32 H 0.96999 * 120.00507 * 179.97438 * 9 8 7 33 33 H 1.08999 * 109.46828 * 299.99542 * 12 10 9 34 34 H 1.09000 * 109.47349 * 60.00108 * 12 10 9 35 35 H 1.09005 * 109.47003 * 300.00041 * 13 12 10 36 36 H 1.08999 * 109.47512 * 59.99276 * 13 12 10 37 37 H 0.97005 * 119.99628 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5230 -0.0013 6 6 5.0263 2.9929 0.8931 7 6 5.3283 4.2652 0.5485 8 6 4.5900 4.5868 -0.6018 9 7 4.6151 5.8130 -1.2802 10 6 5.4011 6.8133 -0.8352 11 8 6.0863 6.6525 0.1527 12 6 5.4276 8.1319 -1.5642 13 6 6.3928 9.0860 -0.8577 14 6 6.4199 10.4045 -1.5870 15 1 5.8100 10.5474 -2.4668 16 6 7.2232 11.4281 -1.1311 17 7 7.9662 11.2537 -0.0601 18 14 7.2572 13.0621 -2.0357 19 1 6.2175 13.9610 -1.4732 20 1 8.5935 13.6893 -1.8747 21 1 6.9876 12.8351 -3.4782 22 7 3.8725 3.5385 -0.9307 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6885 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.8567 0.6439 -0.8909 29 1 3.8574 0.6436 0.8891 30 1 5.4300 2.4491 1.7343 31 1 6.0153 4.9182 1.0661 32 1 4.0674 5.9414 -2.0704 33 1 5.7593 7.9731 -2.5903 34 1 4.4274 8.5650 -1.5685 35 1 6.0607 9.2447 0.1684 36 1 7.3931 8.6532 -0.8528 37 1 8.5316 11.9738 0.2604 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291812907.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:53 Heat of formation + Delta-G solvation = -3.800656 kcal Electronic energy + Delta-G solvation = -19187.453973 eV Core-core repulsion = 15967.045141 eV Total energy + Delta-G solvation = -3220.408832 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.28490 -39.20686 -38.30587 -34.93671 -33.52631 -33.03630 -31.03612 -30.05512 -28.75660 -26.59018 -25.77120 -23.51492 -22.34247 -21.32270 -20.24285 -19.50100 -17.55733 -16.96034 -16.77051 -16.33579 -15.99825 -15.64929 -15.48248 -15.12659 -14.49827 -14.40652 -13.83266 -13.48889 -13.16173 -12.88900 -12.68148 -12.24169 -12.20426 -11.94972 -11.74475 -11.21010 -10.95188 -10.65618 -10.62358 -10.61599 -10.13653 -10.00627 -9.68707 -9.24020 -9.09738 -8.78170 -8.34509 -8.11085 -5.98101 -4.02581 1.80170 2.10523 2.68439 3.16572 3.32998 3.39343 3.41863 3.46823 3.65065 4.35749 4.46211 4.55270 4.76992 4.86282 4.92393 4.92851 5.12427 5.23611 5.30871 5.33400 5.37218 5.59403 5.80559 5.90020 6.13644 6.14319 6.40595 6.60406 6.79314 6.95790 7.08517 7.34197 7.71742 7.81327 8.00352 8.03757 8.34230 8.57903 9.05258 9.61166 11.12808 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.054043 B = 0.002735 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.984830 B =10234.377569 C =10580.582883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.050 3.950 4 C 0.146 3.854 5 N -0.376 5.376 6 C 0.061 3.939 7 C -0.263 4.263 8 C 0.310 3.690 9 N -0.647 5.647 10 C 0.518 3.482 11 O -0.507 6.507 12 C -0.125 4.125 13 C 0.036 3.964 14 C -0.528 4.528 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.889 5.889 18 Si 0.894 3.106 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 N -0.334 5.334 23 H 0.089 0.911 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.176 0.824 31 H 0.175 0.825 32 H 0.413 0.587 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.461 -21.353 0.085 24.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.311 6.311 3 C -0.028 4.028 4 C 0.024 3.976 5 N -0.162 5.162 6 C -0.084 4.084 7 C -0.293 4.293 8 C 0.054 3.946 9 N -0.297 5.297 10 C 0.306 3.694 11 O -0.378 6.378 12 C -0.165 4.165 13 C -0.001 4.001 14 C -0.566 4.566 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 N -0.165 5.165 23 H 0.107 0.893 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.109 0.891 29 H 0.122 0.878 30 H 0.193 0.807 31 H 0.193 0.807 32 H 0.248 0.752 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.565 -22.076 0.124 25.402 hybrid contribution 0.061 1.448 -0.282 1.477 sum -12.504 -20.628 -0.158 24.122 Atomic orbital electron populations 1.22766 0.80128 1.02959 1.00385 1.87765 1.20453 1.27261 1.95615 1.22712 0.93004 0.85012 1.02026 1.21266 0.92195 0.79193 1.04905 1.47878 1.35389 1.11111 1.21835 1.22605 0.94221 0.95534 0.95994 1.22008 1.09530 0.96834 1.00910 1.19387 0.95165 0.86997 0.93057 1.43270 1.46266 1.09419 1.30784 1.21876 0.77269 0.85316 0.84889 1.90599 1.40285 1.81338 1.25569 1.21917 1.04006 0.90199 1.00403 1.18937 0.93665 0.91735 0.95790 1.21194 1.25595 0.97624 1.12225 0.92495 1.25022 0.95450 0.98832 0.95076 1.69994 1.26904 1.32805 1.23049 0.86575 0.77316 0.83890 0.80070 1.20668 1.21229 1.19871 1.77281 1.27090 0.96598 1.15544 0.89283 0.93865 0.93737 0.92678 0.91585 0.89145 0.87791 0.80656 0.80748 0.75189 0.89586 0.89606 0.95605 0.95587 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.47 10.70 -35.23 -0.38 -3.85 16 3 C 0.05 0.44 6.12 37.16 0.23 0.67 16 4 C 0.15 1.26 6.87 -4.04 -0.03 1.24 16 5 N -0.38 -4.58 3.68 -61.38 -0.23 -4.81 16 6 C 0.06 0.74 11.44 -17.24 -0.20 0.54 16 7 C -0.26 -4.17 9.61 -39.83 -0.38 -4.56 16 8 C 0.31 5.05 8.11 -154.38 -1.25 3.80 16 9 N -0.65 -10.14 5.45 -11.13 -0.06 -10.20 16 10 C 0.52 9.81 7.80 -10.99 -0.09 9.73 16 11 O -0.51 -11.32 13.11 5.55 0.07 -11.25 16 12 C -0.13 -2.44 5.64 -27.89 -0.16 -2.59 16 13 C 0.04 0.95 4.26 -27.88 -0.12 0.83 16 14 C -0.53 -14.68 9.11 -34.44 -0.31 -14.99 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 18 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 N -0.33 -4.99 12.43 31.44 0.39 -4.60 16 23 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.10 0.64 8.07 -51.93 -0.42 0.22 16 30 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.18 3.11 5.92 -52.49 -0.31 2.80 16 32 H 0.41 5.15 8.82 -40.82 -0.36 4.79 16 33 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 323.20 15.07 4.87 4.87 Total: -1.00 -34.59 323.20 -6.18 -40.77 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.28 Total: 1.38 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -1.29 Total: -2.45 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.84 Total: -45.90 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.30 Total: -15.09 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.59 -6.18 -40.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291812907.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.970 kcal (2) G-P(sol) polarization free energy of solvation -34.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds