Wall clock time and date at job start Mon Mar 30 2020 00:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47627 * 2 1 4 4 C 1.36930 * 120.00066 * 276.49608 * 3 2 1 5 5 H 1.08002 * 120.00006 * 141.09918 * 4 3 2 6 6 C 1.38813 * 120.00295 * 321.10443 * 4 3 2 7 7 N 1.31614 * 120.00542 * 154.17503 * 6 4 3 8 8 Si 1.86805 * 119.99693 * 334.17192 * 6 4 3 9 9 H 1.48502 * 109.47188 * 95.04371 * 8 6 4 10 10 H 1.48495 * 109.46991 * 215.04802 * 8 6 4 11 11 H 1.48504 * 109.46857 * 335.04734 * 8 6 4 12 12 C 1.46501 * 119.99909 * 96.49767 * 3 2 1 13 13 H 1.09002 * 109.47107 * 180.02562 * 12 3 2 14 14 C 1.53008 * 109.46764 * 299.99884 * 12 3 2 15 15 C 1.50694 * 109.47426 * 60.00024 * 12 3 2 16 16 O 1.21281 * 119.99937 * 359.97438 * 15 12 3 17 17 N 1.34773 * 120.00186 * 180.02562 * 15 12 3 18 18 C 1.38729 * 120.00234 * 180.27730 * 17 15 12 19 19 C 1.36528 * 126.88042 * 179.72178 * 18 17 15 20 20 C 1.40953 * 103.91619 * 179.97438 * 19 18 17 21 21 C 1.50701 * 126.73050 * 179.97438 * 20 19 18 22 22 N 1.30324 * 106.53677 * 0.02562 * 20 19 18 23 23 O 1.20916 * 111.82013 * 359.69850 * 22 20 19 24 24 H 1.09003 * 109.46673 * 300.00380 * 1 2 3 25 25 H 1.08997 * 109.46492 * 59.99774 * 1 2 3 26 26 H 1.08997 * 109.47282 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47123 * 239.99496 * 2 1 3 28 28 H 1.09008 * 109.46969 * 120.00398 * 2 1 3 29 29 H 0.96994 * 120.00442 * 179.97438 * 7 6 4 30 30 H 1.09008 * 109.46585 * 180.02562 * 14 12 3 31 31 H 1.08996 * 109.47506 * 299.99736 * 14 12 3 32 32 H 1.08999 * 109.47075 * 60.00816 * 14 12 3 33 33 H 0.97003 * 119.99939 * 359.97438 * 17 15 12 34 34 H 1.07998 * 128.04150 * 0.03817 * 19 18 17 35 35 H 1.09003 * 109.47101 * 90.00333 * 21 20 19 36 36 H 1.08993 * 109.47258 * 210.00368 * 21 20 19 37 37 H 1.09002 * 109.47243 * 330.00770 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.1203 2.0714 -1.1782 5 1 1.8592 3.1187 -1.2148 6 6 2.5589 1.4250 -2.3257 7 7 2.1991 1.8708 -3.5106 8 14 3.6599 -0.0778 -2.1881 9 1 2.8286 -1.3072 -2.2417 10 1 4.6290 -0.0861 -3.3132 11 1 4.3974 -0.0348 -0.8998 12 6 2.3981 2.0239 1.2606 13 1 2.7337 3.0419 1.0628 14 6 1.1901 2.0589 2.1991 15 6 3.5135 1.2433 1.9065 16 8 3.9484 0.2477 1.3673 17 7 4.0273 1.6508 3.0840 18 6 5.0581 0.9354 3.6758 19 6 5.6826 1.2223 4.8555 20 6 6.6387 0.1955 4.9914 21 6 7.6165 0.0188 6.1244 22 7 6.5118 -0.5704 3.9447 23 8 5.6375 -0.1807 3.2059 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 2.5059 1.4194 -4.3124 30 1 1.4724 2.5376 3.1369 31 1 0.3833 2.6236 1.7319 32 1 0.8541 1.0411 2.3970 33 1 3.6793 2.4468 3.5155 34 1 5.4885 2.0443 5.5286 35 1 7.1646 -0.5975 6.9017 36 1 8.5184 -0.4680 5.7534 37 1 7.8738 0.9940 6.5378 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299339206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:20 Heat of formation + Delta-G solvation = 56.055697 kcal Electronic energy + Delta-G solvation = -21036.882117 eV Core-core repulsion = 17819.068852 eV Total energy + Delta-G solvation = -3217.813266 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.71979 -39.79575 -36.35639 -35.13552 -34.56721 -32.32117 -31.27609 -29.89295 -28.73653 -28.69105 -24.57377 -23.50555 -23.16601 -22.16059 -20.49959 -19.37539 -18.07232 -17.54294 -16.95815 -16.43696 -15.82146 -15.49399 -14.65266 -14.33597 -13.95201 -13.61885 -13.45899 -13.08984 -13.03598 -12.78226 -12.64280 -12.33215 -12.17958 -11.89262 -11.52219 -11.47100 -11.21734 -11.09547 -10.63334 -10.44768 -10.25821 -9.97428 -9.74676 -9.71066 -9.16557 -8.47411 -8.34153 -6.94158 -6.07887 -3.51329 1.54421 2.24156 2.40036 3.11095 3.43765 3.58217 3.69884 3.88069 4.19826 4.59215 4.76929 4.80645 5.06454 5.12984 5.27201 5.33871 5.35622 5.49960 5.60251 5.65170 5.67874 5.90672 6.05235 6.07594 6.23513 6.36681 6.37128 6.43045 6.56385 6.62698 6.93936 7.18151 7.22959 7.96827 8.23060 8.35530 8.49642 8.88968 9.63410 10.00924 11.05033 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.026138 B = 0.005826 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.968739 B = 4805.122628 C = 5322.280288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.137 3.863 3 N -0.570 5.570 4 C -0.285 4.285 5 H 0.081 0.919 6 C 0.052 3.948 7 N -0.887 5.887 8 Si 0.857 3.143 9 H -0.287 1.287 10 H -0.306 1.306 11 H -0.233 1.233 12 C 0.158 3.842 13 H 0.104 0.896 14 C -0.158 4.158 15 C 0.474 3.526 16 O -0.475 6.475 17 N -0.638 5.638 18 C 0.232 3.768 19 C -0.298 4.298 20 C 0.034 3.966 21 C -0.072 4.072 22 N -0.378 5.378 23 O 0.108 5.892 24 H 0.046 0.954 25 H 0.061 0.939 26 H 0.036 0.964 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.265 0.735 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.426 0.574 34 H 0.171 0.829 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.937 1.502 18.900 19.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.012 3.988 3 N -0.289 5.289 4 C -0.413 4.413 5 H 0.098 0.902 6 C -0.151 4.151 7 N -0.526 5.526 8 Si 0.685 3.315 9 H -0.215 1.215 10 H -0.234 1.234 11 H -0.156 1.156 12 C 0.045 3.955 13 H 0.122 0.878 14 C -0.217 4.217 15 C 0.260 3.740 16 O -0.342 6.342 17 N -0.294 5.294 18 C 0.070 3.930 19 C -0.326 4.326 20 C -0.124 4.124 21 C -0.130 4.130 22 N -0.089 5.089 23 O 0.050 5.950 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.266 0.734 34 H 0.188 0.812 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.783 -0.362 17.703 18.106 hybrid contribution 0.280 0.237 0.484 0.608 sum 4.063 -0.125 18.187 18.636 Atomic orbital electron populations 1.22299 0.98717 0.99351 1.01994 1.21063 0.92189 0.85696 0.99819 1.44107 1.70998 1.11987 1.01789 1.18694 1.41788 0.96792 0.84000 0.90164 1.25489 0.96570 0.98016 0.95034 1.69901 1.42879 1.42140 0.97675 0.87276 0.82276 0.82756 0.79144 1.21480 1.23376 1.15573 1.20860 0.89531 0.97058 0.88076 0.87804 1.22313 0.99149 1.02357 0.97849 1.24020 0.84669 0.86891 0.78385 1.90809 1.58644 1.24885 1.59895 1.43962 1.32748 1.29140 1.23583 1.21214 0.91652 0.88444 0.91670 1.21729 1.04165 1.06677 0.99993 1.23151 0.99389 0.93301 0.96578 1.20125 0.96244 1.03200 0.93393 1.73938 1.07597 1.22577 1.04832 1.85145 1.36607 1.32661 1.40631 0.93501 0.91944 0.94463 0.93274 0.93563 0.92521 0.93230 0.90770 0.92383 0.73414 0.81186 0.90325 0.90707 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 10.01 37.16 0.37 -2.80 16 2 C 0.14 3.05 4.11 -4.04 -0.02 3.04 16 3 N -0.57 -12.89 1.72 -166.98 -0.29 -13.18 16 4 C -0.28 -7.61 9.73 -15.06 -0.15 -7.76 16 5 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 6 C 0.05 1.50 5.26 -17.43 -0.09 1.41 16 7 N -0.89 -26.69 13.97 55.49 0.78 -25.91 16 8 Si 0.86 23.03 25.38 -169.99 -4.31 18.71 16 9 H -0.29 -7.66 6.63 56.52 0.37 -7.28 16 10 H -0.31 -8.36 7.11 56.52 0.40 -7.96 16 11 H -0.23 -6.44 5.43 56.52 0.31 -6.14 16 12 C 0.16 2.77 3.12 -69.08 -0.22 2.55 16 13 H 0.10 1.71 7.89 -51.93 -0.41 1.30 16 14 C -0.16 -2.11 8.16 37.16 0.30 -1.81 16 15 C 0.47 8.57 6.81 -10.99 -0.07 8.50 16 16 O -0.47 -10.91 11.86 -15.84 -0.19 -11.10 16 17 N -0.64 -8.68 5.29 -11.79 -0.06 -8.74 16 18 C 0.23 3.52 7.92 -15.05 -0.12 3.40 16 19 C -0.30 -3.60 11.15 -39.17 -0.44 -4.03 16 20 C 0.03 0.46 7.31 -82.20 -0.60 -0.14 16 21 C -0.07 -0.63 10.47 36.01 0.38 -0.25 16 22 N -0.38 -6.53 12.06 33.48 0.40 -6.13 16 23 O 0.11 2.04 9.63 -4.76 -0.05 1.99 16 24 H 0.05 0.79 6.17 -51.93 -0.32 0.47 16 25 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 1.24 3.46 -51.93 -0.18 1.06 16 28 H 0.05 1.00 6.48 -51.92 -0.34 0.66 16 29 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.05 0.47 7.56 -51.92 -0.39 0.08 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.82 6.66 -51.93 -0.35 0.47 16 33 H 0.43 3.81 8.24 -40.82 -0.34 3.48 16 34 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 302.85 15.07 4.56 4.56 Total: -1.00 -34.50 302.85 -4.76 -39.26 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -4.96 Total: -1.57 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -0.65 Total: 2.10 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.83 Total: -53.96 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -0.23 Total: -9.11 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.31 Total: 18.71 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.50 -4.76 -39.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299339206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.318 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds