Wall clock time and date at job start Mon Mar 30 2020 00:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46495 * 109.47342 * 2 1 4 4 C 1.36934 * 120.00611 * 271.00672 * 3 2 1 5 5 H 1.08002 * 120.00038 * 187.04070 * 4 3 2 6 6 C 1.38809 * 120.00026 * 7.04271 * 4 3 2 7 7 N 1.31618 * 119.99952 * 18.44814 * 6 4 3 8 8 Si 1.86803 * 120.00184 * 198.45299 * 6 4 3 9 9 H 1.48498 * 109.46944 * 59.99664 * 8 6 4 10 10 H 1.48494 * 109.46935 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46764 * 299.99576 * 8 6 4 12 12 C 1.46513 * 119.99487 * 91.00636 * 3 2 1 13 13 C 1.50701 * 109.46883 * 97.51031 * 12 3 2 14 14 C 1.35023 * 120.15265 * 91.75193 * 13 12 3 15 15 C 1.41581 * 119.10660 * 179.74667 * 14 13 12 16 16 O 1.21785 * 120.30267 * 180.31132 * 15 14 13 17 17 N 1.34834 * 119.38717 * 0.54653 * 15 14 13 18 18 C 1.46498 * 119.86683 * 179.74060 * 17 15 14 19 19 C 1.34594 * 120.26340 * 359.71474 * 17 15 14 20 20 O 1.21588 * 119.53541 * 180.02562 * 19 17 15 21 21 N 1.34540 * 120.93051 * 0.02562 * 19 17 15 22 22 C 1.46506 * 119.68662 * 180.02562 * 21 19 17 23 23 H 1.08997 * 109.46552 * 299.99686 * 1 2 3 24 24 H 1.09004 * 109.46953 * 59.99000 * 1 2 3 25 25 H 1.08992 * 109.47416 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46809 * 240.00371 * 2 1 3 27 27 H 1.08994 * 109.46855 * 120.01017 * 2 1 3 28 28 H 0.96998 * 120.00486 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.46844 * 217.50916 * 12 3 2 30 30 H 1.08998 * 109.46905 * 337.50787 * 12 3 2 31 31 H 1.07997 * 120.44779 * 359.97438 * 14 13 12 32 32 H 1.08997 * 109.47467 * 269.97598 * 18 17 15 33 33 H 1.08999 * 109.47496 * 29.98133 * 18 17 15 34 34 H 1.09003 * 109.47170 * 149.97565 * 18 17 15 35 35 H 1.09004 * 109.46876 * 275.79333 * 22 21 19 36 36 H 1.08994 * 109.47564 * 35.79515 * 22 21 19 37 37 H 1.08997 * 109.47318 * 155.80303 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2271 2.0337 -1.1856 5 1 2.6931 3.0080 -1.1911 6 6 1.8396 1.4431 -2.3805 7 7 0.9670 0.4577 -2.3749 8 14 2.5566 2.0466 -3.9965 9 1 4.0321 1.8804 -3.9760 10 1 1.9854 1.2570 -5.1169 11 1 2.2224 3.4817 -4.1808 12 6 2.2836 2.0643 1.2687 13 6 3.7545 1.9811 1.5861 14 6 4.5916 2.9610 1.1834 15 6 5.9685 2.8630 1.4983 16 8 6.7420 3.7371 1.1508 17 7 6.4162 1.7907 2.1823 18 6 7.8397 1.6759 2.5088 19 6 5.5603 0.8257 2.5668 20 8 5.9782 -0.1352 3.1834 21 7 4.2488 0.9095 2.2784 22 6 3.3414 -0.1564 2.7107 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5140 0.8899 28 1 0.6965 0.0446 -3.2098 29 1 1.9881 3.1103 1.1868 30 1 1.7125 1.5866 2.0648 31 1 4.2155 3.8098 0.6318 32 1 8.3556 1.1506 1.7051 33 1 8.2673 2.6717 2.6251 34 1 7.9554 1.1199 3.4392 35 1 3.3580 -0.9659 1.9809 36 1 3.6620 -0.5353 3.6811 37 1 2.3288 0.2390 2.7915 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330364072.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:46 Heat of formation + Delta-G solvation = 7.333872 kcal Electronic energy + Delta-G solvation = -21485.163855 eV Core-core repulsion = 18265.237853 eV Total energy + Delta-G solvation = -3219.926003 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.01282 -38.70676 -37.78715 -35.72984 -34.92344 -32.15885 -31.33644 -29.70435 -28.22461 -26.67546 -25.98056 -23.56787 -23.04244 -22.22813 -20.29195 -18.83459 -17.56299 -16.93627 -16.76290 -16.37461 -15.40188 -15.23276 -14.72490 -14.46923 -13.80087 -13.74190 -13.49386 -13.23724 -13.17878 -12.76996 -12.49208 -12.22593 -12.07915 -11.75407 -11.32147 -11.03297 -10.99775 -10.75953 -10.64716 -10.54351 -10.14977 -9.95205 -9.79535 -9.58427 -9.48894 -8.56749 -8.09270 -7.16974 -5.88696 -3.32224 1.44430 2.19835 2.27599 3.30354 3.32515 3.38670 3.42737 3.79832 4.36346 4.70143 4.90512 5.18452 5.26591 5.28375 5.35149 5.40587 5.44538 5.60200 5.67384 5.71832 5.76279 5.97774 6.17507 6.22048 6.36441 6.49521 6.76338 6.86038 6.91483 7.02268 7.50073 7.53313 7.62733 7.77620 8.08832 8.13564 8.21184 9.04870 9.60025 10.00071 11.08082 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.019810 B = 0.007303 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.102186 B = 3832.900045 C = 4713.909809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.161 3.839 3 N -0.581 5.581 4 C -0.259 4.259 5 H 0.080 0.920 6 C 0.004 3.996 7 N -0.896 5.896 8 Si 0.904 3.096 9 H -0.284 1.284 10 H -0.290 1.290 11 H -0.282 1.282 12 C 0.172 3.828 13 C 0.198 3.802 14 C -0.304 4.304 15 C 0.550 3.450 16 O -0.534 6.534 17 N -0.560 5.560 18 C 0.083 3.917 19 C 0.692 3.308 20 O -0.557 6.557 21 N -0.523 5.523 22 C 0.078 3.922 23 H 0.006 0.994 24 H 0.102 0.898 25 H 0.020 0.980 26 H 0.088 0.912 27 H 0.009 0.991 28 H 0.254 0.746 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.166 0.834 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.071 -0.207 9.857 10.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.037 3.963 3 N -0.300 5.300 4 C -0.387 4.387 5 H 0.098 0.902 6 C -0.193 4.193 7 N -0.542 5.542 8 Si 0.733 3.267 9 H -0.210 1.210 10 H -0.216 1.216 11 H -0.208 1.208 12 C 0.042 3.958 13 C 0.088 3.912 14 C -0.332 4.332 15 C 0.349 3.651 16 O -0.412 6.412 17 N -0.304 5.304 18 C -0.059 4.059 19 C 0.396 3.604 20 O -0.432 6.432 21 N -0.242 5.242 22 C -0.063 4.063 23 H 0.025 0.975 24 H 0.120 0.880 25 H 0.039 0.961 26 H 0.106 0.894 27 H 0.027 0.973 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.183 0.817 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.632 -0.488 9.863 10.521 hybrid contribution 0.435 0.195 -1.059 1.161 sum 4.067 -0.293 8.804 9.702 Atomic orbital electron populations 1.22458 0.98343 0.98465 1.01482 1.21065 0.93246 0.83584 0.98441 1.44232 1.74377 1.11605 0.99824 1.19284 1.34188 1.02001 0.83237 0.90240 1.24780 0.97924 0.98691 0.97937 1.70151 1.30894 1.27543 1.25576 0.86330 0.79235 0.78107 0.82977 1.21031 1.21591 1.20808 1.20129 0.85359 0.99831 0.90466 1.22912 1.01103 0.83207 0.83948 1.21521 0.90786 1.05440 1.15423 1.17518 0.90102 0.80392 0.77124 1.90813 1.58607 1.38922 1.52822 1.46371 1.10735 1.21123 1.52192 1.21783 0.77667 1.04023 1.02406 1.15920 0.80930 0.83156 0.80431 1.90948 1.76052 1.31771 1.44426 1.44599 1.06741 1.22066 1.50819 1.22230 0.93172 0.89266 1.01624 0.97469 0.87983 0.96091 0.89430 0.97279 0.93529 0.89904 0.91383 0.81690 0.91303 0.89236 0.89501 0.90338 0.89730 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.60 37.16 0.36 -2.68 16 2 C 0.16 3.34 5.62 -4.04 -0.02 3.32 16 3 N -0.58 -12.28 2.54 -174.60 -0.44 -12.72 16 4 C -0.26 -6.28 9.73 -15.06 -0.15 -6.42 16 5 H 0.08 1.90 7.90 -52.49 -0.41 1.48 16 6 C 0.00 0.10 5.10 -17.43 -0.09 0.01 16 7 N -0.90 -22.96 7.73 55.49 0.43 -22.53 16 8 Si 0.90 20.76 29.59 -169.99 -5.03 15.73 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.17 2.86 5.34 -5.19 -0.03 2.83 16 13 C 0.20 3.29 6.19 -81.51 -0.50 2.79 16 14 C -0.30 -5.35 9.63 -39.45 -0.38 -5.73 16 15 C 0.55 10.15 7.44 -14.96 -0.11 10.04 16 16 O -0.53 -10.97 16.70 5.11 0.09 -10.89 16 17 N -0.56 -9.44 2.96 -131.50 -0.39 -9.83 16 18 C 0.08 1.12 10.13 59.85 0.61 1.73 16 19 C 0.69 11.89 8.12 -87.29 -0.71 11.19 16 20 O -0.56 -10.16 15.45 5.29 0.08 -10.08 16 21 N -0.52 -8.34 3.01 -124.33 -0.37 -8.71 16 22 C 0.08 1.02 8.67 59.85 0.52 1.54 16 23 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 24 H 0.10 2.45 5.88 -51.93 -0.31 2.14 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.09 2.14 6.03 -51.93 -0.31 1.82 16 27 H 0.01 0.16 4.71 -51.93 -0.24 -0.08 16 28 H 0.25 6.47 8.31 -40.82 -0.34 6.13 16 29 H 0.08 1.32 8.02 -51.93 -0.42 0.90 16 30 H 0.07 0.96 5.80 -51.93 -0.30 0.66 16 31 H 0.17 2.83 8.06 -52.49 -0.42 2.41 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.14 7.42 -51.93 -0.39 0.75 16 34 H 0.09 1.07 7.39 -51.93 -0.38 0.68 16 35 H 0.08 1.08 7.00 -51.93 -0.36 0.72 16 36 H 0.08 1.00 7.56 -51.93 -0.39 0.61 16 37 H 0.10 1.10 5.19 -51.93 -0.27 0.83 16 LS Contribution 298.53 15.07 4.50 4.50 Total: -1.00 -29.15 298.53 -6.27 -35.42 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -4.62 Total: 0.51 kcal Atomic # 6 Polarization: 19.12 SS G_CDS: -0.51 Total: 18.61 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.78 Total: -53.80 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: 0.17 Total: -20.97 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.15 -6.27 -35.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330364072.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.754 kcal (2) G-P(sol) polarization free energy of solvation -29.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds